==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION, SIGNALING PROTEIN 30-MAR-04 1SXD . COMPND 2 MOLECULE: GA REPEAT BINDING PROTEIN, ALPHA; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR C.D.MACKERETH,M.SCHAERPF,L.N.GENTILE,S.E.MACINTOSH, . 91 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5386.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 68.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 15.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 44.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 164 A G 0 0 69 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 166.4 -5.7 -4.5 -12.3 2 165 A S + 0 0 93 5,-0.0 2,-0.8 0, 0.0 0, 0.0 -0.113 360.0 133.5-121.9 33.5 -9.5 -4.9 -11.9 3 166 A H > - 0 0 147 1,-0.2 4,-1.0 2,-0.0 3,-0.3 -0.767 32.1-175.9 -95.0 109.0 -9.4 -7.1 -8.8 4 167 A M H >>S+ 0 0 80 -2,-0.8 4,-3.1 1,-0.2 5,-0.5 0.683 71.1 81.6 -76.2 -17.7 -11.9 -5.9 -6.2 5 168 A A H >5S+ 0 0 79 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.946 102.0 31.5 -52.2 -57.2 -10.8 -8.6 -3.7 6 169 A A H >5S+ 0 0 14 -3,-0.3 4,-2.2 2,-0.2 5,-0.3 0.878 121.5 53.0 -70.4 -36.8 -7.7 -6.7 -2.6 7 170 A L H X5S+ 0 0 3 -4,-1.0 4,-3.5 2,-0.2 5,-0.4 0.978 110.6 42.5 -65.9 -58.7 -9.4 -3.3 -3.1 8 171 A E H X5S+ 0 0 110 -4,-3.1 4,-1.8 1,-0.2 -1,-0.2 0.820 112.4 60.3 -57.5 -31.0 -12.6 -3.9 -1.1 9 172 A G H <X S+ 0 0 0 -4,-2.2 3,-0.9 2,-0.2 4,-0.8 0.885 120.2 56.2 -78.4 -39.8 -8.2 -2.5 2.2 11 174 A R H >X S+ 0 0 80 -4,-3.5 4,-2.1 -5,-0.3 3,-0.6 0.867 104.1 54.2 -61.0 -35.1 -10.8 0.2 1.2 12 175 A K H 3< S+ 0 0 113 -4,-1.8 4,-0.3 -5,-0.4 -1,-0.3 0.755 112.2 46.8 -67.0 -20.0 -13.2 -1.3 3.7 13 176 A E H <4 S+ 0 0 62 -3,-0.9 6,-0.3 -4,-0.4 -2,-0.3 0.588 112.5 51.2 -91.0 -13.4 -10.3 -0.8 6.2 14 177 A Q H XX>S+ 0 0 2 -4,-0.8 4,-2.0 -3,-0.6 3,-1.6 0.929 105.0 47.4 -94.3 -51.5 -9.6 2.8 5.0 15 178 A E T 3<5S+ 0 0 127 -4,-2.1 -3,-0.1 1,-0.3 -1,-0.1 0.765 109.6 57.8 -65.6 -23.3 -12.9 4.6 5.1 16 179 A R T 345S+ 0 0 209 -5,-0.3 -1,-0.3 -4,-0.3 -2,-0.2 0.666 119.5 29.0 -77.7 -17.3 -13.5 3.2 8.6 17 180 A L T <45S- 0 0 95 -3,-1.6 -2,-0.2 -4,-0.1 -1,-0.2 0.447 110.5-109.7-124.0 -9.3 -10.2 4.8 9.7 18 181 A G T <5 + 0 0 57 -4,-2.0 -3,-0.2 1,-0.3 -4,-0.1 0.445 60.2 160.8 91.4 0.1 -9.9 7.8 7.5 19 182 A I < - 0 0 9 -5,-1.4 -1,-0.3 -6,-0.3 -2,-0.1 -0.355 41.1-118.0 -60.4 125.4 -7.0 6.3 5.6 20 183 A P - 0 0 27 0, 0.0 -1,-0.1 0, 0.0 6,-0.1 -0.359 7.0-141.0 -68.4 144.4 -6.5 8.0 2.2 21 184 A Y S S+ 0 0 15 63,-0.1 64,-0.1 -2,-0.1 65,-0.1 0.860 85.7 72.6 -70.6 -40.0 -6.9 6.0 -1.0 22 185 A D S > S- 0 0 14 62,-0.1 3,-1.4 1,-0.1 4,-0.2 -0.677 81.8-135.8 -86.1 132.1 -4.0 7.8 -2.7 23 186 A P G > S+ 0 0 0 0, 0.0 3,-1.3 0, 0.0 37,-0.2 0.750 95.5 65.8 -59.4 -31.2 -0.6 6.8 -1.4 24 187 A I G 3 S+ 0 0 68 1,-0.3 33,-0.4 35,-0.1 34,-0.1 0.779 98.7 51.8 -68.9 -26.2 0.9 10.3 -1.2 25 188 A H G < S+ 0 0 107 -3,-1.4 -1,-0.3 31,-0.2 6,-0.0 0.446 84.2 118.7 -90.9 1.8 -1.5 11.5 1.5 26 189 A W < - 0 0 6 -3,-1.3 30,-3.2 -4,-0.2 31,-0.4 -0.308 57.9-137.5 -67.0 148.0 -0.7 8.6 3.8 27 190 A S > - 0 0 53 28,-0.2 4,-3.1 29,-0.1 5,-0.3 -0.718 36.8 -94.9 -96.7 161.1 0.8 9.2 7.2 28 191 A T H > S+ 0 0 39 -2,-0.3 4,-1.4 1,-0.2 26,-0.2 0.813 127.0 47.6 -47.2 -39.9 3.5 6.9 8.5 29 192 A D H > S+ 0 0 117 2,-0.2 4,-1.4 1,-0.2 3,-0.4 0.962 114.6 44.4 -65.2 -52.1 1.0 4.8 10.4 30 193 A Q H > S+ 0 0 33 2,-0.3 4,-2.4 1,-0.2 -2,-0.2 0.828 105.5 63.0 -64.1 -34.2 -1.4 4.5 7.4 31 194 A V H X S+ 0 0 0 -4,-3.1 4,-1.7 1,-0.2 -1,-0.2 0.928 115.0 33.2 -52.5 -44.3 1.6 3.8 5.1 32 195 A L H X S+ 0 0 25 -4,-1.4 4,-2.3 -3,-0.4 5,-0.3 0.540 106.5 67.6 -96.4 -8.0 2.2 0.7 7.1 33 196 A H H X S+ 0 0 85 -4,-1.4 4,-2.8 2,-0.2 5,-0.3 0.925 109.4 43.0 -63.3 -44.4 -1.5 0.0 7.9 34 197 A W H X S+ 0 0 0 -4,-2.4 4,-3.3 2,-0.2 5,-0.5 0.968 114.9 46.9 -58.7 -57.7 -1.5 -0.6 4.1 35 198 A V H X S+ 0 0 0 -4,-1.7 4,-1.5 1,-0.2 -2,-0.2 0.886 118.6 42.0 -59.1 -38.7 1.8 -2.6 4.2 36 199 A V H X S+ 0 0 73 -4,-2.3 4,-1.3 2,-0.2 -2,-0.2 0.964 120.5 40.5 -71.8 -52.4 0.6 -4.7 7.2 37 200 A W H X S+ 0 0 22 -4,-2.8 4,-1.4 -5,-0.3 3,-0.3 0.938 120.3 43.9 -61.1 -48.2 -2.9 -5.3 6.0 38 201 A V H X S+ 0 0 0 -4,-3.3 4,-0.7 -5,-0.3 -1,-0.2 0.796 108.4 56.5 -76.7 -24.5 -2.0 -5.8 2.4 39 202 A M H <>S+ 0 0 12 -4,-1.5 5,-3.4 -5,-0.5 6,-0.3 0.819 106.1 57.5 -68.6 -25.7 0.9 -8.0 3.2 40 203 A K H ><5S+ 0 0 105 -4,-1.3 3,-2.2 -3,-0.3 -2,-0.2 0.941 95.6 58.6 -64.5 -51.0 -1.8 -10.1 5.0 41 204 A E H 3<5S+ 0 0 89 -4,-1.4 -1,-0.2 1,-0.3 -2,-0.1 0.722 117.9 32.1 -63.1 -22.5 -4.1 -10.7 2.1 42 205 A F T 3<5S- 0 0 72 -4,-0.7 -1,-0.3 -3,-0.2 -2,-0.2 0.152 112.3-115.4-118.5 16.0 -1.4 -12.5 0.1 43 206 A S T < 5 + 0 0 98 -3,-2.2 -3,-0.2 1,-0.1 3,-0.1 0.878 69.4 139.0 54.1 46.5 0.4 -13.9 3.1 44 207 A M < + 0 0 16 -5,-3.4 2,-2.9 -6,-0.2 -4,-0.2 0.958 13.2 156.2 -78.6 -62.5 3.6 -11.9 2.6 45 208 A T + 0 0 87 -6,-0.3 2,-0.6 -9,-0.2 -1,-0.1 -0.147 57.7 71.1 72.1 -47.0 4.2 -11.1 6.2 46 209 A D + 0 0 130 -2,-2.9 2,-0.4 -3,-0.1 -1,-0.2 -0.386 63.1 127.1-103.9 54.4 7.9 -10.6 5.8 47 210 A I S S- 0 0 5 -2,-0.6 2,-0.3 -12,-0.1 24,-0.1 -0.937 74.1 -92.2-108.4 138.0 8.1 -7.3 3.9 48 211 A D + 0 0 65 -2,-0.4 4,-0.1 1,-0.2 -2,-0.1 -0.254 50.2 165.3 -56.9 106.9 10.2 -4.6 5.3 49 212 A L S > S+ 0 0 62 -2,-0.3 3,-1.3 2,-0.2 -1,-0.2 0.895 76.6 51.3 -84.1 -47.5 8.0 -2.4 7.6 50 213 A T G > S+ 0 0 120 1,-0.3 3,-0.6 2,-0.2 -1,-0.1 0.706 107.9 54.7 -66.9 -19.2 10.8 -0.5 9.3 51 214 A T G 3 S+ 0 0 44 1,-0.2 -1,-0.3 19,-0.1 -2,-0.2 0.619 110.0 46.4 -88.6 -13.6 12.4 0.3 6.0 52 215 A L G < S+ 0 0 0 -3,-1.3 2,-2.4 -4,-0.1 -1,-0.2 0.044 74.1 129.5-111.7 22.1 9.1 1.9 4.8 53 216 A N < + 0 0 101 -3,-0.6 2,-0.3 -22,-0.1 -25,-0.1 -0.477 47.6 102.2 -78.4 70.8 8.6 3.8 8.1 54 217 A I S S- 0 0 34 -2,-2.4 -23,-0.2 -26,-0.2 -22,-0.1 -0.832 74.7 -89.0-140.6 177.4 8.0 7.0 6.2 55 218 A S >> - 0 0 44 -2,-0.3 4,-2.5 -28,-0.1 3,-0.6 -0.404 44.4 -97.7 -91.0 172.4 5.0 9.2 5.2 56 219 A G H 3> S+ 0 0 0 -30,-3.2 4,-3.5 1,-0.3 5,-0.3 0.877 121.8 56.7 -58.8 -42.3 3.0 9.0 2.1 57 220 A R H 3> S+ 0 0 151 -33,-0.4 4,-0.9 -31,-0.4 -1,-0.3 0.851 111.5 45.3 -59.7 -33.7 4.8 11.7 0.2 58 221 A E H <> S+ 0 0 70 -3,-0.6 4,-0.7 2,-0.2 3,-0.3 0.951 114.9 46.9 -69.9 -50.9 8.0 9.7 0.8 59 222 A L H >< S+ 0 0 0 -4,-2.5 3,-1.0 1,-0.2 -2,-0.2 0.936 116.5 42.8 -56.1 -52.5 6.4 6.4 -0.2 60 223 A C H 3< S+ 0 0 32 -4,-3.5 -1,-0.2 -37,-0.2 -2,-0.2 0.710 109.8 58.3 -71.9 -20.8 4.8 7.8 -3.3 61 224 A S H 3< S+ 0 0 76 -4,-0.9 2,-0.4 -5,-0.3 -1,-0.2 0.555 89.2 86.6 -89.0 -6.9 7.9 9.8 -4.3 62 225 A L S << S- 0 0 19 -3,-1.0 2,-0.0 -4,-0.7 -4,-0.0 -0.766 78.4-123.6 -97.5 138.8 10.2 6.7 -4.5 63 226 A N >> - 0 0 108 -2,-0.4 4,-1.6 1,-0.1 3,-0.5 -0.319 33.7 -98.5 -73.2 160.5 10.5 4.6 -7.7 64 227 A Q H 3> S+ 0 0 77 1,-0.2 4,-3.4 2,-0.2 5,-0.2 0.819 124.8 58.7 -45.9 -33.8 9.9 0.9 -7.6 65 228 A E H 3> S+ 0 0 132 2,-0.2 4,-1.3 1,-0.2 5,-0.2 0.936 100.2 51.7 -65.9 -50.9 13.6 0.5 -7.4 66 229 A D H <> S+ 0 0 69 -3,-0.5 4,-1.4 1,-0.2 -1,-0.2 0.842 117.0 42.5 -58.3 -31.5 14.1 2.4 -4.2 67 230 A F H X S+ 0 0 0 -4,-1.6 4,-3.1 2,-0.2 -2,-0.2 0.938 109.9 55.7 -74.5 -46.7 11.4 0.2 -2.8 68 231 A F H < S+ 0 0 56 -4,-3.4 -2,-0.2 1,-0.2 -1,-0.2 0.570 109.5 47.9 -69.8 -9.3 12.8 -3.0 -4.3 69 232 A Q H < S+ 0 0 157 -4,-1.3 -1,-0.2 2,-0.2 -2,-0.2 0.840 115.4 42.5 -90.4 -45.4 16.1 -2.3 -2.7 70 233 A R H < S- 0 0 85 -4,-1.4 -2,-0.2 1,-0.3 -3,-0.1 0.831 148.2 -8.9 -59.5 -33.0 14.5 -1.6 0.7 71 234 A V >< - 0 0 0 -4,-3.1 3,-0.6 -5,-0.1 -1,-0.3 -0.703 64.3-174.3-174.4 99.9 12.3 -4.6 0.1 72 235 A P T 3 S+ 0 0 75 0, 0.0 3,-0.4 0, 0.0 -4,-0.1 0.725 76.6 69.5 -81.9 -21.2 12.2 -6.3 -3.4 73 236 A R T 3 S+ 0 0 103 1,-0.2 3,-0.3 -27,-0.1 4,-0.1 0.070 73.3 90.9 -90.2 28.4 9.4 -8.8 -2.7 74 237 A G X> + 0 0 0 -3,-0.6 4,-1.4 1,-0.2 3,-0.7 0.101 40.5 118.5-112.7 25.8 6.6 -6.1 -2.6 75 238 A E H 3> S+ 0 0 135 -3,-0.4 4,-1.5 1,-0.2 -1,-0.2 0.865 76.2 55.6 -53.6 -39.3 5.5 -6.1 -6.2 76 239 A I H 3> S+ 0 0 55 -3,-0.3 4,-1.7 1,-0.2 -1,-0.2 0.827 101.6 58.9 -69.0 -29.7 2.0 -7.2 -5.2 77 240 A L H <> S+ 0 0 0 -3,-0.7 4,-1.8 1,-0.2 3,-0.4 0.980 106.5 45.4 -58.7 -58.0 1.7 -4.2 -2.8 78 241 A W H X S+ 0 0 31 -4,-1.4 4,-2.7 1,-0.2 -1,-0.2 0.794 106.2 61.8 -57.7 -33.3 2.3 -1.6 -5.6 79 242 A S H X S+ 0 0 53 -4,-1.5 4,-1.6 2,-0.2 -1,-0.2 0.937 109.1 39.6 -61.9 -49.6 -0.2 -3.4 -7.8 80 243 A H H X S+ 0 0 7 -4,-1.7 4,-2.3 -3,-0.4 -1,-0.2 0.809 112.2 60.6 -68.0 -28.0 -3.0 -2.9 -5.4 81 244 A L H X S+ 0 0 6 -4,-1.8 4,-2.3 2,-0.2 5,-0.3 0.896 101.3 50.4 -70.1 -41.3 -1.6 0.5 -4.8 82 245 A E H X S+ 0 0 113 -4,-2.7 4,-1.8 1,-0.2 -1,-0.2 0.950 112.3 49.4 -54.3 -46.9 -2.1 1.5 -8.4 83 246 A L H X S+ 0 0 7 -4,-1.6 4,-2.4 2,-0.2 -2,-0.2 0.838 107.6 55.9 -65.2 -35.2 -5.6 0.2 -8.1 84 247 A L H < S+ 0 0 0 -4,-2.3 6,-0.3 2,-0.2 -2,-0.2 0.991 112.7 37.7 -56.6 -62.2 -6.1 2.3 -4.9 85 248 A R H <>S+ 0 0 89 -4,-2.3 5,-0.6 1,-0.2 3,-0.4 0.720 120.5 49.4 -72.9 -17.0 -5.2 5.6 -6.4 86 249 A K H ><5S+ 0 0 130 -4,-1.8 3,-1.1 -5,-0.3 2,-0.5 0.879 106.1 54.8 -80.2 -39.9 -7.0 4.7 -9.6 87 250 A Y T 3<5S+ 0 0 89 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.1 -0.195 107.3 46.0-101.9 42.8 -10.3 3.5 -8.1 88 251 A V T 3 5S- 0 0 47 -2,-0.5 -1,-0.3 -3,-0.4 -2,-0.1 0.171 112.2-108.6-147.8 3.1 -11.2 6.5 -6.1 89 252 A L T < 5S- 0 0 161 -3,-1.1 -3,-0.1 -4,-0.1 -2,-0.1 0.746 80.2 -60.0 63.1 27.9 -10.5 9.1 -8.8 90 253 A A < 0 0 51 -5,-0.6 -5,-0.1 -6,-0.3 -4,-0.1 0.780 360.0 360.0 62.7 120.1 -7.5 9.9 -6.5 91 254 A S 0 0 80 0, 0.0 -6,-0.0 0, 0.0 0, 0.0 0.999 360.0 360.0 -70.3 360.0 -8.5 11.0 -3.0