==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 07-JUL-97 1TC3 . COMPND 2 MOLECULE: DNA (5'- . SOURCE 2 SYNTHETIC: YES; . AUTHOR G.VAN POUDEROYEN,R.F.KETTING,A.PERRAKIS,R.H.A.PLASTERK, . 51 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4023.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 64.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 13.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 45.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 202 C P 0 0 170 0, 0.0 4,-0.1 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0-159.3 9.8 123.2 34.7 2 203 C R + 0 0 260 2,-0.1 2,-0.3 1,-0.0 0, 0.0 0.750 360.0 11.0 -71.8 -17.7 6.8 125.3 33.9 3 204 C G S S- 0 0 47 1,-0.0 -1,-0.0 0, 0.0 0, 0.0 -0.909 96.9 -68.5-146.9 174.7 7.8 125.1 30.3 4 205 C S - 0 0 83 -2,-0.3 3,-0.1 1,-0.1 -2,-0.1 -0.248 51.7-103.5 -68.8 153.6 10.0 123.2 27.9 5 206 C A - 0 0 74 1,-0.1 2,-0.4 -4,-0.1 -1,-0.1 -0.303 51.3 -81.6 -71.9 158.8 13.7 123.5 27.8 6 207 C L - 0 0 9 1,-0.1 -1,-0.1 4,-0.1 2,-0.0 -0.510 42.5-132.1 -72.8 127.4 15.3 125.6 25.1 7 208 C S > - 0 0 45 -2,-0.4 4,-3.4 1,-0.1 5,-0.4 -0.240 25.3-108.5 -71.4 154.2 15.8 124.0 21.8 8 209 C D H > S+ 0 0 113 1,-0.2 4,-0.8 2,-0.2 -1,-0.1 0.852 121.8 50.9 -53.2 -34.8 19.1 124.2 20.0 9 210 C T H > S+ 0 0 84 2,-0.2 4,-2.7 3,-0.2 -1,-0.2 0.947 110.3 47.1 -66.4 -52.7 17.4 126.5 17.5 10 211 C E H > S+ 0 0 29 1,-0.3 4,-2.7 2,-0.2 3,-0.4 0.985 114.7 46.9 -54.2 -55.6 15.9 128.8 20.1 11 212 C R H X S+ 0 0 72 -4,-3.4 4,-1.0 1,-0.2 -1,-0.3 0.832 110.1 55.5 -60.1 -21.3 19.2 129.0 21.9 12 213 C A H X S+ 0 0 51 -4,-0.8 4,-1.4 -5,-0.4 -1,-0.2 0.862 107.8 47.1 -76.3 -37.2 20.7 129.6 18.5 13 214 C Q H >X S+ 0 0 89 -4,-2.7 4,-3.0 -3,-0.4 3,-0.9 0.976 109.0 55.3 -64.5 -54.6 18.5 132.5 17.9 14 215 C L H 3X S+ 0 0 0 -4,-2.7 4,-1.6 1,-0.3 -1,-0.2 0.815 104.7 54.3 -47.0 -34.9 19.3 133.9 21.3 15 216 C D H 3X S+ 0 0 61 -4,-1.0 4,-1.2 -5,-0.3 -1,-0.3 0.900 111.8 42.3 -73.6 -34.4 22.9 133.7 20.6 16 217 C V H S+ 0 0 28 -4,-3.0 5,-2.6 1,-0.3 4,-0.4 0.848 107.7 51.1 -54.1 -40.5 20.2 138.2 19.0 18 219 C K H ><5S+ 0 0 114 -4,-1.6 3,-1.4 -5,-0.4 -1,-0.3 0.925 107.0 53.9 -65.1 -39.7 22.5 138.9 21.8 19 220 C L H 3<5S+ 0 0 133 -4,-1.2 -2,-0.3 1,-0.3 -1,-0.2 0.885 108.6 49.8 -58.8 -37.6 25.2 139.4 19.3 20 221 C L T 3<5S- 0 0 121 -4,-1.9 -1,-0.3 -5,-0.0 -2,-0.2 0.490 115.3-120.7 -82.6 0.0 22.8 142.0 17.8 21 222 C N T < 5 + 0 0 148 -3,-1.4 -3,-0.2 -4,-0.4 -2,-0.1 0.845 49.1 172.0 67.5 31.8 22.3 143.5 21.1 22 223 C V < - 0 0 37 -5,-2.6 -1,-0.2 1,-0.1 2,-0.2 -0.394 35.8-103.2 -72.7 153.9 18.6 142.9 21.2 23 224 C S > - 0 0 59 1,-0.1 4,-3.0 -2,-0.1 5,-0.2 -0.507 20.9-118.4 -80.5 151.1 16.8 143.6 24.3 24 225 C L H > S+ 0 0 49 1,-0.3 4,-2.7 2,-0.2 5,-0.2 0.923 115.4 50.1 -47.0 -54.3 15.7 141.0 26.7 25 226 C H H > S+ 0 0 108 1,-0.2 4,-1.8 2,-0.2 -1,-0.3 0.872 110.5 46.9 -59.4 -40.8 12.1 142.0 26.2 26 227 C E H > S+ 0 0 72 2,-0.2 4,-3.5 1,-0.2 -1,-0.2 0.935 108.4 57.9 -68.8 -37.9 12.3 142.0 22.4 27 228 C M H X S+ 0 0 2 -4,-3.0 4,-2.3 1,-0.2 6,-0.3 0.952 105.5 49.7 -54.1 -50.8 14.0 138.7 22.5 28 229 C S H X>S+ 0 0 17 -4,-2.7 4,-1.2 1,-0.2 5,-0.9 0.955 111.7 47.7 -57.9 -45.7 11.1 137.2 24.4 29 230 C R H ><5S+ 0 0 149 -4,-1.8 3,-0.5 -5,-0.2 -1,-0.2 0.943 107.9 57.1 -61.6 -40.6 8.6 138.5 22.0 30 231 C K H 3<5S+ 0 0 115 -4,-3.5 -1,-0.2 1,-0.2 -2,-0.2 0.909 124.2 18.5 -57.8 -46.1 10.6 137.3 19.2 31 232 C I H 3<5S- 0 0 22 -4,-2.3 -1,-0.2 2,-0.2 -2,-0.2 0.197 102.8-116.2-114.1 20.6 10.7 133.6 20.2 32 233 C S T <<5 + 0 0 104 -4,-1.2 2,-0.3 -3,-0.5 -3,-0.2 0.889 69.0 131.9 50.0 48.4 7.8 133.6 22.6 33 234 C R < - 0 0 46 -5,-0.9 -1,-0.2 -6,-0.3 -2,-0.2 -0.944 61.3 -96.9-128.8 149.3 9.9 132.6 25.6 34 235 C S > - 0 0 67 -2,-0.3 4,-1.8 1,-0.1 5,-0.1 -0.167 26.4-125.1 -59.6 153.5 10.0 134.1 29.1 35 236 C R H > S+ 0 0 101 1,-0.2 4,-4.2 2,-0.2 -1,-0.1 0.883 107.4 67.4 -66.4 -37.4 12.7 136.6 29.9 36 237 C H H > S+ 0 0 130 2,-0.2 4,-1.8 1,-0.2 5,-0.3 0.912 104.3 37.5 -50.9 -58.4 13.6 134.4 32.7 37 238 C C H > S+ 0 0 29 1,-0.2 4,-2.8 2,-0.2 5,-0.3 0.996 117.0 52.2 -62.6 -52.3 14.9 131.5 30.7 38 239 C I H X S+ 0 0 0 -4,-1.8 4,-2.3 2,-0.2 -2,-0.2 0.893 111.9 47.7 -43.8 -49.3 16.4 133.8 28.2 39 240 C R H >X S+ 0 0 101 -4,-4.2 4,-2.0 2,-0.2 3,-0.7 0.987 111.8 45.7 -55.4 -71.6 18.2 135.7 30.9 40 241 C V H 3X S+ 0 0 72 -4,-1.8 4,-0.8 1,-0.3 3,-0.2 0.831 114.1 50.7 -38.7 -52.0 19.6 132.8 32.8 41 242 C Y H >< S+ 0 0 7 -4,-2.8 3,-0.9 -5,-0.3 -1,-0.3 0.890 110.0 47.2 -58.2 -48.2 20.8 131.1 29.5 42 243 C L H << S+ 0 0 33 -4,-2.3 -1,-0.2 -3,-0.7 -2,-0.2 0.762 101.6 65.6 -68.7 -22.6 22.6 134.1 28.1 43 244 C K H 3< S- 0 0 179 -4,-2.0 -1,-0.2 1,-0.3 -2,-0.2 0.822 133.3 -6.1 -68.0 -23.5 24.3 134.6 31.4 44 245 C D << + 0 0 69 -3,-0.9 4,-0.5 -4,-0.8 -1,-0.3 -0.511 65.5 176.5-172.1 89.5 26.0 131.3 30.7 45 246 C P S > S+ 0 0 51 0, 0.0 3,-0.6 0, 0.0 -3,-0.1 0.827 81.8 60.2 -68.7 -35.2 24.9 129.4 27.7 46 247 C V T 3 S+ 0 0 116 1,-0.2 4,-0.1 -4,-0.1 -2,-0.0 0.985 100.5 52.1 -52.9 -66.5 27.5 126.8 28.3 47 248 C S T > S+ 0 0 63 2,-0.1 3,-2.5 -6,-0.1 -1,-0.2 0.618 83.6 114.6 -48.2 -18.2 26.2 125.7 31.7 48 249 C Y T < S+ 0 0 77 -3,-0.6 3,-0.1 -4,-0.5 -7,-0.0 -0.384 81.2 20.6 -60.4 131.9 22.8 125.3 30.2 49 250 C G T 3 S+ 0 0 75 1,-0.2 2,-1.0 -2,-0.1 -1,-0.3 0.372 91.8 121.4 88.3 -2.8 21.8 121.7 30.4 50 251 C T < 0 0 98 -3,-2.5 -1,-0.2 1,-0.1 -3,-0.0 -0.783 360.0 360.0 -95.0 94.1 24.4 121.0 33.2 51 252 C S 0 0 172 -2,-1.0 -1,-0.1 -3,-0.1 -3,-0.0 -0.497 360.0 360.0-154.9 360.0 22.3 119.7 36.1