==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIMICROBIAL PROTEIN 23-MAY-04 1TDP . COMPND 2 MOLECULE: CARNOBACTERIOCIN B2 IMMUNITY PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: CARNOBACTERIUM MALTAROMATICUM; . AUTHOR T.SPRULES,K.E.KAWULKA,J.C.VEDERAS . 111 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6529.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 86 77.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 21 18.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 57 51.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 66 0, 0.0 38,-0.1 0, 0.0 39,-0.1 0.000 360.0 360.0 360.0 162.3 5.5 5.2 12.2 2 2 A D - 0 0 99 36,-0.2 4,-0.2 1,-0.0 39,-0.1 0.134 360.0 -82.4 -79.5-158.6 5.1 8.9 11.7 3 3 A I S > S+ 0 0 100 2,-0.2 4,-1.7 3,-0.1 5,-0.3 0.919 124.0 56.6 -76.6 -46.5 1.8 10.6 10.6 4 4 A K H >> S+ 0 0 41 1,-0.3 4,-1.2 2,-0.2 3,-0.7 0.962 118.6 31.6 -46.6 -69.0 2.2 10.0 6.9 5 5 A S H 3> S+ 0 0 0 1,-0.2 4,-2.3 2,-0.2 -1,-0.3 0.592 109.4 77.9 -66.2 -12.8 2.5 6.2 7.3 6 6 A Q H 3> S+ 0 0 70 -4,-0.2 4,-3.8 2,-0.2 -1,-0.2 0.925 100.1 33.4 -65.6 -48.9 0.3 6.4 10.3 7 7 A T H X S+ 0 0 45 -4,-2.3 4,-2.4 2,-0.2 3,-0.6 0.976 117.5 47.6 -71.4 -57.4 -0.9 2.1 8.3 10 10 A L H 3X S+ 0 0 68 -4,-3.8 4,-3.2 1,-0.3 5,-0.2 0.885 111.6 52.9 -50.5 -38.7 -3.8 2.7 10.6 11 11 A N H 3X S+ 0 0 38 -4,-2.8 4,-2.3 2,-0.2 -1,-0.3 0.878 105.6 55.3 -64.6 -35.5 -5.9 2.4 7.4 12 12 A L H < S+ 0 0 0 -4,-2.3 3,-5.4 -5,-0.2 -2,-0.2 0.924 102.0 63.3 -78.2 -51.0 -8.8 -2.4 6.5 16 16 A Y H 3< S+ 0 0 82 -4,-4.0 -2,-0.2 1,-0.3 -1,-0.2 0.802 99.7 58.9 -45.8 -29.4 -7.3 -5.7 7.5 17 17 A K T 3< S+ 0 0 128 -4,-1.4 -1,-0.3 -5,-0.2 -2,-0.2 0.389 77.4 131.7 -81.5 4.7 -10.4 -6.0 9.7 18 18 A D X> - 0 0 16 -3,-5.4 3,-4.2 1,-0.2 4,-2.9 -0.429 65.1-132.6 -60.4 117.1 -12.4 -5.6 6.5 19 19 A P H 3> S+ 0 0 110 0, 0.0 4,-0.8 0, 0.0 -1,-0.2 0.735 110.6 49.0 -45.3 -25.0 -15.1 -8.4 6.7 20 20 A E H 34 S+ 0 0 103 2,-0.2 49,-0.2 1,-0.1 48,-0.1 0.231 113.6 46.3-102.3 16.5 -14.2 -9.3 3.1 21 21 A V H <4 S+ 0 0 0 -3,-4.2 7,-0.8 -6,-0.1 6,-0.3 0.579 102.4 62.0-119.2 -35.4 -10.5 -9.2 4.0 22 22 A K H < S+ 0 0 76 -4,-2.9 3,-0.2 1,-0.3 -2,-0.2 0.898 107.0 47.4 -56.7 -40.9 -11.0 -11.3 7.2 23 23 A A S < S+ 0 0 86 -4,-0.8 2,-1.1 -5,-0.3 -1,-0.3 0.812 106.7 62.0 -69.8 -30.5 -12.2 -13.9 4.8 24 24 A N >> + 0 0 29 1,-0.2 4,-2.6 2,-0.1 3,-1.7 -0.643 64.6 175.3 -98.3 75.0 -9.2 -13.2 2.7 25 25 A E H 3> S+ 0 0 107 -2,-1.1 4,-3.4 1,-0.3 5,-0.3 0.827 82.1 57.5 -48.2 -34.6 -6.4 -14.2 5.1 26 26 A F H 3> S+ 0 0 108 1,-0.2 4,-1.1 2,-0.2 -1,-0.3 0.847 110.4 43.1 -66.3 -33.6 -4.0 -13.5 2.3 27 27 A L H <> S+ 0 0 10 -3,-1.7 4,-1.6 -6,-0.3 -2,-0.2 0.885 121.3 38.6 -79.1 -41.7 -5.4 -10.0 2.0 28 28 A S H X S+ 0 0 0 -4,-2.6 4,-3.3 -7,-0.8 -2,-0.2 0.942 114.4 53.7 -74.3 -47.5 -5.5 -9.3 5.7 29 29 A K H X S+ 0 0 99 -4,-3.4 4,-3.6 -5,-0.3 5,-0.3 0.880 110.7 48.0 -53.4 -41.1 -2.3 -11.1 6.5 30 30 A L H X S+ 0 0 80 -4,-1.1 4,-2.8 -5,-0.3 -1,-0.2 0.913 112.9 47.2 -67.9 -40.0 -0.5 -9.0 3.9 31 31 A V H X S+ 0 0 6 -4,-1.6 4,-2.1 3,-0.2 -2,-0.2 0.861 116.1 48.1 -66.4 -34.0 -2.1 -5.9 5.4 32 32 A V H X S+ 0 0 63 -4,-3.3 4,-2.2 2,-0.2 5,-0.3 0.993 115.3 39.7 -67.8 -65.4 -1.0 -7.2 8.8 33 33 A Q H X S+ 0 0 91 -4,-3.6 4,-1.0 1,-0.3 -2,-0.2 0.923 120.9 47.1 -50.2 -47.0 2.6 -8.1 7.9 34 34 A C H >X S+ 0 0 6 -4,-2.8 4,-1.0 -5,-0.3 3,-0.6 0.892 105.2 61.0 -61.6 -40.6 2.7 -4.9 5.9 35 35 A A H >X S+ 0 0 5 -4,-2.1 4,-1.2 1,-0.3 3,-0.8 0.899 104.1 48.7 -54.0 -42.4 1.1 -3.1 8.8 36 36 A G H 3X S+ 0 0 31 -4,-2.2 4,-0.9 1,-0.2 -1,-0.3 0.772 103.2 62.1 -68.9 -25.5 4.1 -4.0 10.9 37 37 A K H << S+ 0 0 91 -4,-1.0 -1,-0.2 -3,-0.6 -2,-0.2 0.728 101.0 54.1 -71.4 -22.3 6.3 -2.7 8.1 38 38 A L H X< S+ 0 0 2 -4,-1.0 3,-2.0 -3,-0.8 -2,-0.2 0.867 93.3 68.7 -79.0 -39.3 4.7 0.7 8.6 39 39 A T H 3< S+ 0 0 64 -4,-1.2 3,-0.5 1,-0.3 2,-0.5 0.896 98.1 52.9 -45.0 -48.4 5.5 0.9 12.4 40 40 A A T >< + 0 0 47 -4,-0.9 3,-3.6 1,-0.2 -1,-0.3 -0.051 68.0 139.4 -80.8 34.8 9.2 1.1 11.5 41 41 A S T < + 0 0 0 -3,-2.0 3,-0.3 -2,-0.5 -1,-0.2 0.773 55.0 83.9 -52.1 -21.8 8.4 4.0 9.2 42 42 A N T 3 S+ 0 0 162 -3,-0.5 2,-1.2 1,-0.3 -1,-0.3 0.851 85.2 59.8 -48.6 -30.1 11.6 5.5 10.6 43 43 A S S X> S+ 0 0 60 -3,-3.6 4,-2.8 1,-0.2 3,-1.0 -0.507 70.5 159.4 -94.7 59.4 12.9 3.3 7.8 44 44 A E H 3> S+ 0 0 79 -2,-1.2 4,-1.8 -3,-0.3 -1,-0.2 0.795 74.5 56.1 -56.2 -27.1 11.0 5.3 5.3 45 45 A N H 3> S+ 0 0 88 -3,-0.3 4,-0.9 2,-0.2 -1,-0.3 0.853 111.5 42.5 -71.7 -32.9 13.4 3.9 2.8 46 46 A S H <> S+ 0 0 73 -3,-1.0 4,-1.8 2,-0.2 -2,-0.3 0.797 117.5 45.1 -80.4 -30.9 12.4 0.5 3.9 47 47 A Y H X S+ 0 0 2 -4,-2.8 4,-1.2 -6,-0.2 -2,-0.2 0.725 106.5 62.9 -81.9 -23.3 8.8 1.5 4.0 48 48 A I H X S+ 0 0 0 -4,-1.8 4,-1.9 -5,-0.3 -2,-0.2 0.834 104.0 47.8 -67.6 -35.1 9.4 3.1 0.7 49 49 A E H >X S+ 0 0 79 -4,-0.9 4,-2.0 2,-0.3 3,-0.7 0.989 116.5 39.1 -70.3 -59.1 10.1 -0.3 -0.7 50 50 A V H 3X S+ 0 0 19 -4,-1.8 4,-1.0 1,-0.3 -2,-0.2 0.782 115.5 58.4 -60.0 -21.1 7.1 -1.9 0.8 51 51 A I H 3X S+ 0 0 3 -4,-1.2 4,-1.7 2,-0.2 -1,-0.3 0.861 104.2 48.1 -74.0 -35.8 5.6 1.5 -0.3 52 52 A S H << S+ 0 0 6 -4,-1.9 4,-0.3 -3,-0.7 52,-0.3 0.797 116.3 44.4 -71.9 -29.1 6.6 0.7 -3.8 53 53 A L H X S+ 0 0 75 -4,-2.0 4,-1.5 2,-0.1 -2,-0.2 0.620 109.1 59.1 -88.2 -17.4 5.1 -2.7 -3.4 54 54 A L H X S+ 0 0 17 -4,-1.0 4,-1.5 -5,-0.3 5,-0.4 0.957 95.8 55.9 -77.1 -55.4 2.0 -1.4 -1.7 55 55 A S H < S+ 0 0 6 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.1 0.754 130.0 20.7 -49.8 -25.2 0.6 1.0 -4.4 56 56 A R H > S+ 0 0 92 -4,-0.3 4,-1.4 -5,-0.2 -1,-0.2 0.590 115.1 70.7-116.5 -22.7 0.7 -2.0 -6.7 57 57 A G H >X S+ 0 0 18 -4,-1.5 4,-1.2 2,-0.2 3,-0.6 0.968 95.5 49.6 -60.9 -58.9 0.7 -4.9 -4.2 58 58 A I H 3< S+ 0 0 14 -4,-1.5 -1,-0.2 1,-0.3 -3,-0.1 0.709 124.4 35.1 -56.6 -18.0 -2.9 -4.6 -2.9 59 59 A S H >4 S+ 0 0 10 -5,-0.4 3,-1.0 -3,-0.2 -1,-0.3 0.534 104.8 71.2-109.5 -13.6 -3.9 -4.5 -6.5 60 60 A S H << S+ 0 0 35 -4,-1.4 -2,-0.2 -3,-0.6 -3,-0.2 0.654 78.0 80.9 -75.6 -17.9 -1.2 -6.9 -7.7 61 61 A Y T 3< S+ 0 0 25 -4,-1.2 4,-0.3 -5,-0.1 -1,-0.2 0.668 78.6 76.6 -63.0 -17.8 -3.1 -9.8 -6.0 62 62 A Y X + 0 0 110 -3,-1.0 3,-3.4 2,-0.1 -2,-0.1 0.906 58.8 96.5 -58.4-100.2 -5.4 -10.0 -9.0 63 63 A L T 3 S- 0 0 114 1,-0.3 3,-0.2 2,-0.1 -2,-0.1 -0.197 111.7 -6.8 47.5-125.0 -3.7 -11.7 -11.9 64 64 A S T 3 S+ 0 0 125 1,-0.2 2,-0.4 2,-0.0 -1,-0.3 0.464 134.1 68.8 -78.5 0.8 -4.7 -15.4 -11.8 65 65 A H S < S- 0 0 98 -3,-3.4 -1,-0.2 -4,-0.3 -2,-0.1 -0.615 74.0-173.8-119.8 70.9 -6.5 -14.8 -8.5 66 66 A K + 0 0 171 -2,-0.4 2,-0.2 -3,-0.2 -4,-0.0 -0.284 15.9 147.9 -64.0 148.5 -9.5 -12.5 -9.4 67 67 A R - 0 0 150 1,-0.2 -1,-0.1 2,-0.0 -5,-0.0 -0.737 48.4-100.0-155.6-157.5 -11.5 -11.1 -6.6 68 68 A I - 0 0 106 -2,-0.2 -1,-0.2 -48,-0.1 -48,-0.0 0.810 38.4-131.7-104.0 -77.0 -13.6 -8.1 -5.6 69 69 A I - 0 0 44 -49,-0.2 2,-0.6 3,-0.0 4,-0.1 0.614 11.9-131.7 114.8 88.7 -11.8 -5.6 -3.3 70 70 A P > - 0 0 15 0, 0.0 3,-0.6 0, 0.0 4,-0.2 -0.566 39.5 -99.8 -71.7 110.8 -13.6 -4.3 -0.1 71 71 A S G >> S+ 0 0 96 -2,-0.6 4,-1.6 1,-0.3 3,-1.0 0.355 126.2 57.1 11.1 -71.3 -13.3 -0.5 -0.0 72 72 A S G 34 S+ 0 0 34 1,-0.3 -1,-0.3 2,-0.2 -54,-0.1 0.264 97.7 68.4 -63.4 19.2 -10.4 -0.7 2.5 73 73 A M G <4 S+ 0 0 3 -3,-0.6 -1,-0.3 -4,-0.1 -2,-0.2 -0.158 110.1 27.2-128.8 35.4 -8.6 -2.8 -0.1 74 74 A L T <> S+ 0 0 42 -3,-1.0 4,-1.8 -4,-0.2 -2,-0.2 0.264 108.9 65.3-161.9 -33.3 -8.2 -0.1 -2.7 75 75 A T H X S+ 0 0 53 -4,-1.6 4,-3.2 2,-0.2 5,-0.1 0.784 100.9 55.1 -73.1 -28.6 -8.0 3.2 -0.7 76 76 A I H > S+ 0 0 0 -5,-0.3 4,-3.2 2,-0.2 5,-0.2 0.989 111.6 39.5 -68.8 -59.4 -4.8 2.1 0.9 77 77 A Y H > S+ 0 0 6 1,-0.2 4,-1.4 2,-0.2 -2,-0.2 0.908 121.3 46.9 -55.5 -41.9 -2.8 1.4 -2.2 78 78 A T H >X S+ 0 0 3 -4,-1.8 4,-2.4 2,-0.2 3,-0.7 0.947 111.1 50.2 -63.6 -47.8 -4.4 4.5 -3.7 79 79 A Q H 3X S+ 0 0 62 -4,-3.2 4,-3.3 1,-0.3 5,-0.2 0.872 106.3 57.5 -56.1 -38.5 -3.6 6.4 -0.5 80 80 A I H 3X S+ 0 0 1 -4,-3.2 4,-1.2 1,-0.2 -1,-0.3 0.855 110.2 42.5 -60.3 -37.1 -0.2 5.1 -0.9 81 81 A Q H S+ 0 0 6 -4,-3.3 5,-4.2 -5,-0.2 6,-1.5 0.905 112.6 47.0 -66.1 -39.5 0.7 10.1 -0.3 84 84 A I H ><5S+ 0 0 30 -4,-1.2 3,-1.0 -5,-0.2 7,-0.3 0.984 119.7 36.0 -62.2 -63.6 3.3 9.9 -3.0 85 85 A K H 3<5S+ 0 0 138 -4,-2.8 -2,-0.2 1,-0.3 -1,-0.2 0.797 116.2 56.2 -62.3 -32.7 1.8 12.5 -5.2 86 86 A N H 3<5S- 0 0 113 -4,-3.0 -1,-0.3 -5,-0.2 -2,-0.2 0.651 116.3-112.6 -76.5 -15.6 0.6 14.6 -2.3 87 87 A G T <<5S+ 0 0 57 -3,-1.0 -3,-0.2 -4,-0.8 -2,-0.1 0.838 83.1 121.8 85.8 36.5 4.1 14.8 -0.9 88 88 A N S > + 0 0 67 -2,-0.3 3,-3.3 1,-0.2 4,-1.3 -0.486 42.2 172.9 -91.2 66.5 9.8 11.2 0.2 91 91 A T H 3> + 0 0 43 -2,-1.8 4,-2.1 1,-0.3 -1,-0.2 0.625 69.2 76.2 -51.2 -11.2 9.1 10.1 -3.3 92 92 A E H 3> S+ 0 0 136 2,-0.2 4,-1.1 3,-0.2 -1,-0.3 0.897 102.5 37.7 -66.4 -38.1 12.5 11.6 -4.0 93 93 A K H X> S+ 0 0 32 -3,-3.3 4,-3.2 2,-0.2 3,-1.0 0.957 116.2 50.2 -75.9 -51.5 13.9 8.5 -2.3 94 94 A L H 3X S+ 0 0 8 -4,-1.3 4,-3.1 1,-0.3 -2,-0.2 0.822 107.2 59.4 -52.4 -31.7 11.3 6.2 -3.8 95 95 A R H 3X S+ 0 0 139 -4,-2.1 4,-1.1 -5,-0.3 -1,-0.3 0.880 109.6 39.9 -66.4 -39.1 12.3 7.9 -7.0 96 96 A K H X>S+ 0 0 72 -4,-3.1 4,-3.4 -5,-0.4 5,-0.8 0.845 103.7 56.2 -70.4 -30.8 12.1 3.0 -8.0 99 99 A I H 3<5S+ 0 0 99 -4,-1.1 -2,-0.2 1,-0.3 -1,-0.2 0.957 107.4 47.2 -62.0 -50.0 14.7 3.6 -10.7 100 100 A A T 3<5S+ 0 0 85 -4,-1.5 -1,-0.3 1,-0.2 -2,-0.2 0.540 120.3 42.1 -67.5 -8.1 16.7 0.7 -9.5 101 101 A K T <45S- 0 0 110 -3,-0.6 -2,-0.2 -4,-0.3 -1,-0.2 0.707 89.4-145.5-108.7 -33.6 13.5 -1.2 -9.4 102 102 A G T <5 + 0 0 64 -4,-3.4 -3,-0.2 -5,-0.1 -4,-0.1 0.967 41.4 166.4 62.2 51.0 11.8 -0.2 -12.6 103 103 A L < - 0 0 60 -5,-0.8 2,-0.1 1,-0.2 -50,-0.1 0.140 32.0 -89.9 -82.6-161.3 8.4 -0.5 -11.0 104 104 A M - 0 0 61 -52,-0.3 -1,-0.2 2,-0.0 -48,-0.1 -0.171 11.7-154.0 -99.4-166.3 4.9 0.7 -12.0 105 105 A S - 0 0 75 -2,-0.1 -1,-0.0 -50,-0.1 -49,-0.0 0.142 26.6-140.0-163.1 22.4 2.9 3.9 -11.4 106 106 A V > - 0 0 5 1,-0.2 3,-0.6 2,-0.1 -2,-0.0 0.616 22.8-178.6 8.6 86.9 -0.7 2.7 -11.6 107 107 A P T 3 + 0 0 123 0, 0.0 -1,-0.2 0, 0.0 -3,-0.0 0.208 69.8 77.2 -91.6 18.2 -2.3 5.6 -13.6 108 108 A Y T 3 + 0 0 93 3,-0.0 -2,-0.1 2,-0.0 0, 0.0 0.062 65.5 168.2-109.8 19.5 -5.7 3.9 -13.3 109 109 A I < - 0 0 44 -3,-0.6 -35,-0.0 1,-0.2 -3,-0.0 -0.073 24.7-160.3 -40.3 122.0 -6.3 4.9 -9.7 110 110 A Y 0 0 179 1,-0.3 -1,-0.2 -36,-0.1 -35,-0.0 -0.044 360.0 360.0 -98.4 30.6 -9.9 4.2 -8.9 111 111 A F 0 0 162 -37,-0.1 -1,-0.3 -33,-0.1 -33,-0.2 0.010 360.0 360.0 30.1 360.0 -9.8 6.6 -5.9