==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOME BINDING FACTOR 16-AUG-95 1TIG . COMPND 2 MOLECULE: TRANSLATION INITIATION FACTOR 3; . SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; . AUTHOR V.BIOU,F.SHU,V.RAMAKRISHNAN . 88 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5525.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 75.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 7 8.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 19.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 31.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 83 A I 0 0 177 0, 0.0 31,-0.1 0, 0.0 30,-0.1 0.000 360.0 360.0 360.0 -21.2 21.3 1.7 25.3 2 84 A N - 0 0 76 1,-0.0 31,-2.7 31,-0.0 2,-0.6 -0.272 360.0-129.3 -79.9 167.2 19.3 4.5 23.7 3 85 A V E -a 33 0A 94 29,-0.2 2,-0.3 31,-0.1 31,-0.2 -0.955 29.1-161.8-118.0 102.6 16.2 4.2 21.6 4 86 A K E -a 34 0A 75 29,-3.0 31,-3.2 -2,-0.6 2,-0.5 -0.648 10.5-132.2 -89.2 142.5 16.8 6.2 18.4 5 87 A E E -a 35 0A 95 -2,-0.3 2,-0.5 29,-0.2 31,-0.2 -0.879 18.1-173.8-100.8 130.6 14.0 7.3 16.2 6 88 A V E -a 36 0A 6 29,-2.5 31,-2.7 -2,-0.5 2,-0.5 -0.976 16.8-153.3-118.4 111.7 13.8 6.8 12.4 7 89 A R E -a 37 0A 155 -2,-0.5 2,-0.4 29,-0.2 31,-0.2 -0.845 10.7-168.7 -95.5 130.1 10.8 8.5 10.9 8 90 A L E -a 38 0A 8 29,-3.3 31,-0.6 -2,-0.5 47,-0.0 -0.918 14.5-135.7-117.5 145.0 9.3 7.3 7.7 9 91 A S > - 0 0 44 -2,-0.4 3,-1.2 29,-0.1 31,-0.1 -0.696 16.0-133.0 -91.5 149.7 6.7 8.8 5.4 10 92 A P T 3 S+ 0 0 33 0, 0.0 -1,-0.1 0, 0.0 30,-0.1 0.856 113.6 49.5 -72.7 -21.5 3.8 6.8 4.0 11 93 A T T 3 S+ 0 0 111 -3,-0.0 2,-0.1 2,-0.0 -2,-0.0 -0.069 86.2 159.5 -98.6 29.6 4.7 8.4 0.6 12 94 A I < - 0 0 31 -3,-1.2 2,-0.2 1,-0.1 -4,-0.0 -0.325 28.4-146.6 -73.7 130.1 8.4 7.5 1.0 13 95 A E > - 0 0 153 -2,-0.1 4,-2.3 1,-0.1 5,-0.2 -0.502 29.4 -96.4 -92.8 169.2 10.5 7.5 -2.2 14 96 A E H > S+ 0 0 103 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.849 117.1 45.6 -59.5 -43.7 13.5 5.2 -2.8 15 97 A H H > S+ 0 0 137 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.887 112.8 49.6 -71.1 -43.0 16.4 7.5 -1.9 16 98 A D H > S+ 0 0 60 2,-0.2 4,-2.9 1,-0.2 5,-0.2 0.918 110.3 52.8 -58.3 -41.2 14.8 8.7 1.4 17 99 A F H X S+ 0 0 5 -4,-2.3 4,-2.7 2,-0.2 -2,-0.2 0.946 110.9 45.7 -56.9 -47.9 14.1 5.1 2.3 18 100 A N H X S+ 0 0 60 -4,-2.3 4,-2.8 2,-0.2 -2,-0.2 0.911 112.0 52.4 -66.3 -36.2 17.8 4.1 1.7 19 101 A T H X S+ 0 0 30 -4,-2.5 4,-2.3 1,-0.2 -2,-0.2 0.940 113.0 43.8 -63.1 -43.8 18.9 7.2 3.7 20 102 A K H X S+ 0 0 43 -4,-2.9 4,-2.3 2,-0.2 -1,-0.2 0.856 112.6 52.8 -68.4 -37.1 16.7 6.1 6.6 21 103 A L H X S+ 0 0 29 -4,-2.7 4,-2.5 -5,-0.2 -2,-0.2 0.921 108.4 50.6 -64.3 -41.5 17.8 2.5 6.2 22 104 A R H X S+ 0 0 147 -4,-2.8 4,-2.5 1,-0.2 -2,-0.2 0.955 111.6 48.4 -58.9 -51.0 21.5 3.7 6.3 23 105 A N H X S+ 0 0 57 -4,-2.3 4,-2.3 1,-0.2 -1,-0.2 0.880 110.5 50.5 -58.4 -47.4 20.7 5.7 9.5 24 106 A A H X S+ 0 0 0 -4,-2.3 4,-2.4 2,-0.2 -1,-0.2 0.919 111.2 47.9 -54.4 -50.4 18.9 2.7 11.2 25 107 A R H X S+ 0 0 65 -4,-2.5 4,-2.6 2,-0.2 -2,-0.2 0.922 110.2 54.0 -61.5 -36.6 21.8 0.4 10.4 26 108 A K H X S+ 0 0 102 -4,-2.5 4,-1.3 2,-0.2 -2,-0.2 0.921 110.3 45.7 -64.6 -41.2 24.2 3.0 11.8 27 109 A F H <>S+ 0 0 43 -4,-2.3 5,-2.3 1,-0.2 3,-0.2 0.938 114.2 48.4 -65.8 -41.7 22.3 3.2 15.1 28 110 A L H ><5S+ 0 0 5 -4,-2.4 3,-1.4 1,-0.2 -2,-0.2 0.869 108.3 53.0 -68.5 -41.2 22.0 -0.6 15.4 29 111 A E H 3<5S+ 0 0 117 -4,-2.6 -1,-0.2 1,-0.3 -2,-0.2 0.784 105.8 56.1 -62.2 -31.0 25.8 -1.0 14.7 30 112 A K T 3<5S- 0 0 130 -4,-1.3 -1,-0.3 -5,-0.2 -2,-0.2 0.423 124.9-105.9 -78.5 -5.0 26.4 1.5 17.5 31 113 A G T < 5S+ 0 0 20 -3,-1.4 2,-0.2 1,-0.3 -3,-0.2 0.531 77.7 130.1 96.9 4.6 24.4 -0.8 19.9 32 114 A D < - 0 0 18 -5,-2.3 -1,-0.3 -6,-0.2 -29,-0.2 -0.606 57.2-118.4 -95.5 149.7 21.3 1.4 20.1 33 115 A K E -a 3 0A 74 -31,-2.7 -29,-3.0 -2,-0.2 2,-0.5 -0.496 25.3-139.3 -80.6 158.4 17.7 0.3 19.6 34 116 A V E -aB 4 83A 0 49,-3.0 49,-2.9 -31,-0.2 2,-0.6 -0.979 12.1-165.3-126.5 124.2 15.7 1.7 16.7 35 117 A K E -aB 5 82A 60 -31,-3.2 -29,-2.5 -2,-0.5 2,-0.6 -0.948 14.3-160.9-105.6 110.2 12.0 2.8 16.8 36 118 A A E -aB 6 81A 0 45,-2.8 45,-1.7 -2,-0.6 2,-0.4 -0.907 15.5-171.0 -94.6 119.1 10.9 3.2 13.2 37 119 A T E -aB 7 80A 13 -31,-2.7 -29,-3.3 -2,-0.6 2,-0.5 -0.918 22.4-167.9-122.7 140.8 7.7 5.3 13.1 38 120 A I E -aB 8 79A 0 41,-2.5 41,-2.2 -2,-0.4 2,-0.7 -0.990 11.7-158.1-119.7 117.6 5.2 6.3 10.4 39 121 A R E - B 0 78A 147 -31,-0.6 2,-0.3 -2,-0.5 39,-0.2 -0.896 19.0-141.6 -99.3 112.1 2.8 9.1 11.3 40 122 A F - 0 0 5 37,-2.5 2,-0.4 -2,-0.7 -31,-0.0 -0.591 8.4-154.6 -79.1 132.8 -0.3 8.8 9.1 41 123 A K - 0 0 140 -2,-0.3 3,-0.5 0, 0.0 -2,-0.0 -0.900 62.8 -11.4-102.7 131.4 -2.0 11.9 7.7 42 124 A G S S- 0 0 47 -2,-0.4 -2,-0.0 1,-0.2 5,-0.0 0.068 90.6 -74.3 71.0-174.3 -5.7 11.4 6.9 43 125 A R + 0 0 197 4,-0.0 -1,-0.2 -3,-0.0 -3,-0.0 -0.263 53.5 172.0-122.1 47.6 -7.7 8.2 6.7 44 126 A A > - 0 0 49 -3,-0.5 3,-1.3 1,-0.2 4,-0.3 -0.291 37.2-131.0 -56.0 142.3 -6.7 6.4 3.5 45 127 A I T 3 S+ 0 0 161 1,-0.3 -1,-0.2 2,-0.1 4,-0.1 0.620 106.2 50.6 -69.5 -12.3 -8.1 2.9 3.4 46 128 A T T 3> S+ 0 0 65 1,-0.1 4,-2.3 2,-0.1 3,-0.4 0.450 77.9 102.5-111.0 1.6 -4.7 1.6 2.5 47 129 A H H <> S+ 0 0 31 -3,-1.3 4,-2.7 1,-0.2 5,-0.3 0.845 80.5 48.0 -56.6 -49.9 -2.6 3.2 5.3 48 130 A K H > S+ 0 0 89 -4,-0.3 4,-1.9 1,-0.2 -1,-0.2 0.841 112.9 51.7 -62.2 -35.6 -2.2 0.1 7.5 49 131 A E H > S+ 0 0 98 -3,-0.4 4,-2.0 2,-0.2 -2,-0.2 0.926 114.9 39.0 -68.2 -43.0 -1.2 -1.9 4.5 50 132 A I H X S+ 0 0 41 -4,-2.3 4,-2.5 2,-0.2 -2,-0.2 0.847 114.0 53.6 -82.2 -29.6 1.5 0.4 3.2 51 133 A G H X S+ 0 0 0 -4,-2.7 4,-2.4 -5,-0.3 5,-0.3 0.959 111.3 48.4 -64.5 -38.4 2.8 1.3 6.7 52 134 A Q H X S+ 0 0 55 -4,-1.9 4,-2.8 -5,-0.3 -2,-0.2 0.927 112.3 48.3 -63.4 -46.7 3.1 -2.4 7.3 53 135 A R H X S+ 0 0 183 -4,-2.0 4,-1.5 2,-0.2 -1,-0.2 0.851 111.1 48.9 -67.1 -39.5 4.9 -2.8 4.0 54 136 A V H X S+ 0 0 22 -4,-2.5 4,-1.7 2,-0.2 -1,-0.2 0.938 115.6 43.8 -65.3 -44.3 7.3 0.0 4.5 55 137 A L H X S+ 0 0 0 -4,-2.4 4,-2.9 2,-0.2 -2,-0.2 0.893 110.8 54.2 -71.3 -35.6 8.3 -1.2 8.0 56 138 A D H X S+ 0 0 63 -4,-2.8 4,-2.4 -5,-0.3 5,-0.2 0.878 107.4 52.0 -63.9 -37.2 8.6 -4.9 6.9 57 139 A R H X S+ 0 0 105 -4,-1.5 4,-1.8 -5,-0.2 -1,-0.2 0.895 112.0 45.8 -63.1 -43.4 11.0 -3.7 4.3 58 140 A L H X S+ 0 0 0 -4,-1.7 4,-0.8 2,-0.2 -2,-0.2 0.911 113.2 50.0 -63.4 -45.4 13.1 -1.9 6.9 59 141 A S H < S+ 0 0 23 -4,-2.9 3,-0.5 1,-0.2 4,-0.2 0.904 113.4 44.0 -60.2 -48.7 12.9 -4.9 9.3 60 142 A E H >< S+ 0 0 160 -4,-2.4 3,-0.8 1,-0.2 4,-0.2 0.833 109.3 57.4 -65.9 -35.7 14.0 -7.4 6.6 61 143 A A H 3< S+ 0 0 37 -4,-1.8 -1,-0.2 -5,-0.2 -2,-0.2 0.708 113.6 40.4 -69.7 -15.9 16.8 -5.1 5.4 62 144 A C T >X S+ 0 0 0 -4,-0.8 4,-1.8 -3,-0.5 3,-1.3 0.295 81.7 106.9-110.5 4.9 18.2 -5.0 9.0 63 145 A A T <4 S+ 0 0 49 -3,-0.8 -1,-0.1 1,-0.3 -2,-0.1 0.741 71.2 63.8 -57.8 -28.2 17.7 -8.7 9.7 64 146 A D T 34 S+ 0 0 100 -4,-0.2 -1,-0.3 1,-0.2 -2,-0.1 0.856 121.9 17.6 -66.9 -27.2 21.5 -9.4 9.5 65 147 A I T <4 S+ 0 0 27 -3,-1.3 21,-2.2 21,-0.1 22,-0.4 0.403 120.8 54.3-124.1 -4.5 22.2 -7.1 12.5 66 148 A A E < -C 85 0A 6 -4,-1.8 2,-0.3 19,-0.3 -33,-0.0 -0.950 55.7-145.6-134.8 156.8 18.9 -6.7 14.3 67 149 A V E -C 84 0A 66 17,-3.2 17,-2.8 -2,-0.3 2,-0.7 -0.871 32.7-111.9-111.4 152.3 16.0 -8.5 16.0 68 150 A V E +C 83 0A 66 -2,-0.3 15,-0.2 15,-0.2 3,-0.2 -0.756 35.2 172.8 -82.7 115.8 12.4 -7.3 16.0 69 151 A E E S+ 0 0 98 13,-2.3 2,-0.4 -2,-0.7 -1,-0.2 0.818 79.3 19.5 -89.8 -39.0 11.6 -6.4 19.6 70 152 A T E S-C 82 0A 44 12,-1.7 12,-2.2 -3,-0.2 -1,-0.3 -0.957 82.4-142.8-135.8 109.2 8.2 -5.0 18.7 71 153 A A E - 0 0 62 -2,-0.4 9,-0.2 -3,-0.2 12,-0.0 -0.258 51.9 -59.9 -66.9 155.3 6.6 -6.0 15.3 72 154 A P E S+ 0 0 24 0, 0.0 2,-0.3 0, 0.0 9,-0.2 -0.102 73.5 158.6 -45.8 130.4 4.7 -3.3 13.4 73 155 A K E -C 80 0A 97 7,-1.6 7,-2.8 -3,-0.1 2,-0.2 -0.993 39.1-104.8-154.6 155.0 1.8 -1.9 15.4 74 156 A M E +C 79 0A 77 -2,-0.3 5,-0.3 5,-0.2 2,-0.2 -0.564 22.3 179.8 -85.3 145.4 -0.6 1.0 15.7 75 157 A D E > S-C 78 0A 82 3,-2.8 2,-0.6 -2,-0.2 3,-0.5 -0.745 70.2 -64.2-141.4 73.7 -0.3 3.7 18.4 76 158 A G T 3 S- 0 0 66 1,-0.2 -1,-0.0 -2,-0.2 -2,-0.0 -0.587 121.5 -8.9 81.3-114.5 -3.1 6.0 17.6 77 159 A R T 3 S+ 0 0 65 -2,-0.6 -37,-2.5 -3,-0.1 2,-0.3 -0.036 126.5 80.6-106.4 25.0 -2.4 7.6 14.3 78 160 A N E < -BC 39 75A 16 -3,-0.5 -3,-2.8 -39,-0.2 2,-0.4 -0.952 60.6-155.2-127.9 153.5 1.1 6.1 14.2 79 161 A M E -BC 38 74A 3 -41,-2.2 -41,-2.5 -2,-0.3 2,-0.3 -0.980 23.8-178.8-123.8 136.0 2.5 2.8 13.3 80 162 A F E -BC 37 73A 27 -7,-2.8 -7,-1.6 -2,-0.4 2,-0.3 -0.959 21.1-166.6-139.6 162.2 5.9 1.7 14.8 81 163 A L E -B 36 0A 0 -45,-1.7 -45,-2.8 -2,-0.3 2,-0.5 -0.968 13.6-149.7-138.5 142.0 8.4 -1.0 14.9 82 164 A V E -BC 35 70A 16 -12,-2.2 -13,-2.3 -2,-0.3 -12,-1.7 -0.995 11.0-168.8-118.2 126.6 11.3 -1.5 17.3 83 165 A L E -BC 34 68A 1 -49,-2.9 -49,-3.0 -2,-0.5 -15,-0.2 -0.934 2.9-163.6-109.3 139.4 14.5 -3.1 16.2 84 166 A A E - C 0 67A 8 -17,-2.8 -17,-3.2 -2,-0.4 -51,-0.1 -0.923 30.8 -99.2-117.8 147.1 17.2 -4.2 18.8 85 167 A P E - C 0 66A 15 0, 0.0 -19,-0.3 0, 0.0 3,-0.1 -0.327 21.7-136.0 -62.7 140.2 20.8 -5.1 17.9 86 168 A K S S+ 0 0 96 -21,-2.2 2,-0.3 1,-0.1 -20,-0.1 0.857 88.9 14.7 -59.3 -42.9 21.5 -8.8 17.7 87 169 A N 0 0 142 -22,-0.4 -1,-0.1 -3,-0.0 -56,-0.1 -0.922 360.0 360.0-132.6 160.5 24.8 -8.3 19.7 88 170 A D 0 0 178 -2,-0.3 -57,-0.1 -3,-0.1 -56,-0.0 -0.716 360.0 360.0-158.1 360.0 26.2 -5.5 21.8