==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION ACTIVATION 14-FEB-95 1TIV . COMPND 2 MOLECULE: HIV-1 TRANSACTIVATOR PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR P.BAYER,M.KRAFT,R.FRANK,P.ROESCH . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6464.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 20 23.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 15.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 40 0, 0.0 3,-0.1 0, 0.0 71,-0.1 0.000 360.0 360.0 360.0 -64.2 -10.3 2.3 1.5 2 2 A D + 0 0 34 65,-0.5 69,-0.5 1,-0.4 3,-0.2 -0.491 360.0 78.8 111.7 -58.2 -9.5 5.2 4.1 3 3 A P + 0 0 31 0, 0.0 -1,-0.4 0, 0.0 66,-0.1 0.069 67.6 58.8 -73.3-173.0 -8.7 3.4 7.4 4 4 A V + 0 0 37 -3,-0.1 4,-0.3 1,-0.1 3,-0.1 0.701 65.8 137.4 63.5 19.0 -5.4 1.6 8.4 5 5 A D + 0 0 53 1,-0.2 2,-2.1 -3,-0.2 3,-0.4 0.776 51.5 73.4 -73.3 -19.0 -3.7 5.0 7.9 6 6 A P S S+ 0 0 127 0, 0.0 -1,-0.2 0, 0.0 63,-0.1 -0.369 91.1 75.2 -84.1 56.7 -1.5 4.7 11.1 7 7 A N + 0 0 30 -2,-2.1 -2,-0.1 61,-0.5 4,-0.1 0.629 44.4 121.3-125.1 -68.4 0.4 2.2 8.9 8 8 A I + 0 0 24 -3,-0.4 -3,-0.0 60,-0.4 58,-0.0 0.172 58.7 80.5 -24.6 85.8 2.6 3.6 6.2 9 9 A E S S+ 0 0 116 4,-0.1 -1,-0.2 3,-0.1 27,-0.1 0.145 96.8 35.2-154.7 -63.2 6.0 2.2 7.2 10 10 A P S S+ 0 0 36 0, 0.0 26,-0.1 0, 0.0 28,-0.1 0.785 130.6 37.9 -72.2 -25.3 5.9 -1.4 5.9 11 11 A W S S- 0 0 28 25,-0.2 25,-0.1 -4,-0.1 -3,-0.1 0.822 140.7 -43.0 -94.9 -34.3 3.9 -0.2 2.8 12 12 A N + 0 0 50 -5,-0.1 3,-0.3 56,-0.0 54,-0.1 0.211 59.9 179.5-155.6 -78.1 5.6 3.2 2.1 13 13 A H - 0 0 82 1,-0.2 2,-2.2 2,-0.0 -4,-0.1 0.312 58.9 -75.0 71.0 151.5 6.6 5.9 4.9 14 14 A P + 0 0 85 0, 0.0 2,-0.4 0, 0.0 -1,-0.2 -0.447 66.5 179.7 -79.9 69.4 8.3 9.2 3.9 15 15 A G + 0 0 45 -2,-2.2 2,-0.3 -3,-0.3 -2,-0.0 -0.592 9.8 169.2 -77.3 127.3 11.7 7.5 3.2 16 16 A S + 0 0 105 -2,-0.4 62,-0.0 2,-0.0 -1,-0.0 -0.882 19.0 126.1-141.4 105.2 14.6 9.9 2.1 17 17 A Q - 0 0 142 -2,-0.3 2,-1.0 2,-0.1 -2,-0.0 -0.993 65.0 -94.5-156.0 158.0 18.2 8.6 2.0 18 18 A P S S- 0 0 92 0, 0.0 2,-0.1 0, 0.0 -2,-0.0 -0.642 91.5 -51.1 -77.6 99.4 21.3 8.3 -0.4 19 19 A K S S+ 0 0 176 -2,-1.0 -2,-0.1 1,-0.1 0, 0.0 -0.473 83.3 139.2 67.0-134.1 20.8 4.7 -1.7 20 20 A T + 0 0 101 1,-0.2 2,-0.4 -2,-0.1 -1,-0.1 0.999 31.8 175.5 60.9 68.9 20.3 2.2 1.3 21 21 A A + 0 0 92 2,-0.0 2,-0.2 1,-0.0 -1,-0.2 -0.899 21.6 177.0-111.5 136.6 17.4 -0.0 -0.2 22 22 A C + 0 0 99 -2,-0.4 2,-0.2 2,-0.0 -1,-0.0 -0.609 17.9 164.9-135.4 73.3 16.0 -3.1 1.6 23 23 A N - 0 0 133 -2,-0.2 2,-0.5 12,-0.0 -2,-0.0 -0.577 24.8-145.6 -90.2 155.0 13.1 -4.5 -0.7 24 24 A R + 0 0 138 -2,-0.2 2,-0.3 12,-0.1 -2,-0.0 -0.971 36.1 132.1-125.5 121.6 11.6 -8.0 -0.3 25 25 A C + 0 0 80 -2,-0.5 3,-0.1 1,-0.1 10,-0.1 -0.985 20.6 172.6-158.9 162.3 10.3 -10.1 -3.3 26 26 A H + 0 0 186 1,-0.4 2,-0.4 -2,-0.3 -1,-0.1 0.408 69.2 22.8-139.4 -72.9 10.5 -13.7 -4.8 27 27 A C - 0 0 70 7,-0.1 2,-1.0 2,-0.1 -1,-0.4 -0.885 63.6-143.0-108.6 135.8 8.3 -14.5 -7.9 28 28 A K + 0 0 181 -2,-0.4 2,-0.3 -3,-0.1 3,-0.1 -0.731 48.7 131.6 -99.1 90.8 6.9 -11.8 -10.2 29 29 A K S S- 0 0 158 -2,-1.0 3,-0.3 1,-0.1 -2,-0.1 -0.844 87.9 -26.0-140.9 97.6 3.4 -12.9 -11.2 30 30 A C S S- 0 0 127 -2,-0.3 2,-2.7 1,-0.2 -1,-0.1 0.997 74.5-149.5 58.2 67.8 0.6 -10.2 -10.8 31 31 A C + 0 0 51 1,-0.1 2,-1.4 -3,-0.1 3,-0.3 -0.331 33.5 160.5 -70.8 69.1 2.5 -8.3 -8.1 32 32 A Y S S- 0 0 87 -2,-2.7 30,-0.2 -3,-0.3 -1,-0.1 -0.688 84.9 -29.4 -91.9 84.1 -0.7 -7.0 -6.3 33 33 A H S S+ 0 0 8 -2,-1.4 -1,-0.3 28,-0.2 29,-0.1 0.993 88.0 150.2 67.1 65.9 1.0 -6.1 -2.9 34 34 A C + 0 0 42 -3,-0.3 -7,-0.1 -8,-0.0 -2,-0.1 0.564 66.0 44.1-100.7 -12.4 3.8 -8.8 -3.1 35 35 A Q S S+ 0 0 74 -4,-0.1 -24,-0.1 -10,-0.1 -10,-0.1 0.521 71.9 107.7-100.0-115.1 6.4 -6.7 -1.0 36 36 A V - 0 0 12 -25,-0.1 -25,-0.2 1,-0.1 4,-0.1 0.089 64.4-118.5 63.0 179.7 5.3 -4.8 2.3 37 37 A C S S+ 0 0 70 2,-0.1 -1,-0.1 0, 0.0 2,-0.1 -0.031 83.9 54.9-148.3 36.3 6.3 -5.8 5.9 38 38 A F S S- 0 0 58 -28,-0.1 2,-1.3 8,-0.1 9,-0.1 -0.328 110.4 -14.0-139.6-136.8 2.9 -6.5 7.7 39 39 A I + 0 0 61 1,-0.2 3,-0.5 -2,-0.1 10,-0.1 -0.568 60.5 168.8 -75.2 97.8 -0.1 -8.9 7.0 40 40 A K + 0 0 107 -2,-1.3 -1,-0.2 1,-0.2 7,-0.1 -0.028 46.0 103.5 -98.4 33.6 0.6 -9.8 3.3 41 41 A K S S- 0 0 153 6,-0.1 2,-0.4 1,-0.1 -1,-0.2 0.654 78.9-135.8 -88.3 -15.2 -2.1 -12.6 3.2 42 42 A G + 0 0 24 -3,-0.5 5,-0.2 5,-0.0 -1,-0.1 -0.096 54.3 144.4 87.4 -38.6 -4.7 -10.5 1.2 43 43 A L S S+ 0 0 70 -2,-0.4 5,-0.1 1,-0.2 7,-0.1 0.442 81.2 4.9 4.4-100.5 -7.6 -11.8 3.7 44 44 A G S S- 0 0 25 3,-0.3 6,-0.2 5,-0.2 -1,-0.2 0.996 145.1 -46.7 -62.1 -61.8 -9.9 -8.7 3.9 45 45 A I S S- 0 0 34 4,-1.0 -2,-0.1 2,-0.1 5,-0.1 0.479 106.0 -51.1-138.8 -47.5 -7.9 -6.7 1.3 46 46 A S S S+ 0 0 7 3,-0.6 2,-0.2 -5,-0.0 -3,-0.1 0.200 111.1 60.3 168.4 39.4 -4.1 -7.0 2.2 47 47 A Y S S- 0 0 28 2,-0.5 -3,-0.3 -5,-0.2 -6,-0.1 -0.740 108.1 -45.8-153.9-160.1 -3.6 -6.1 6.0 48 48 A G S S- 0 0 28 -2,-0.2 2,-0.2 -5,-0.1 -8,-0.0 0.694 113.0 -49.2 -56.1 -19.0 -4.8 -7.3 9.5 49 49 A R - 0 0 155 -10,-0.1 -4,-1.0 -6,-0.0 -3,-0.6 -0.705 63.9-107.1-177.2-128.5 -8.5 -7.5 8.2 50 50 A K - 0 0 61 -6,-0.2 4,-0.0 -2,-0.2 -46,-0.0 -0.739 18.2-119.7 172.5 140.9 -10.9 -5.1 6.2 51 51 A K - 0 0 103 -2,-0.2 2,-2.3 1,-0.1 -2,-0.0 -0.173 56.0 -77.1 -79.5-178.7 -14.0 -2.9 6.9 52 52 A R S S+ 0 0 231 2,-0.0 2,-0.3 -2,-0.0 -1,-0.1 -0.319 101.4 102.2 -80.3 62.1 -17.4 -3.6 5.1 53 53 A R - 0 0 135 -2,-2.3 2,-0.4 2,-0.0 -2,-0.0 -0.994 52.7-162.0-141.5 145.8 -16.0 -1.9 1.8 54 54 A Q + 0 0 135 -2,-0.3 2,-0.7 -4,-0.0 -9,-0.0 -0.835 14.7 168.0-135.5 99.9 -14.7 -3.4 -1.5 55 55 A R + 0 0 50 -2,-0.4 2,-0.4 2,-0.0 -2,-0.0 -0.699 30.1 128.2-111.0 80.6 -12.6 -1.2 -3.8 56 56 A R + 0 0 194 -2,-0.7 -2,-0.0 2,-0.0 -11,-0.0 -0.952 22.2 121.4-139.0 118.0 -11.1 -3.6 -6.4 57 57 A R S > S- 0 0 160 -2,-0.4 2,-1.4 0, 0.0 3,-1.0 -0.957 73.1 -62.5-160.3 173.1 -11.3 -3.1 -10.2 58 58 A P T 3 S+ 0 0 120 0, 0.0 3,-0.1 0, 0.0 -2,-0.0 -0.493 111.6 70.2 -69.1 90.9 -9.1 -2.7 -13.4 59 59 A S T 3 S+ 0 0 55 -2,-1.4 2,-0.1 1,-0.5 -3,-0.0 0.172 75.0 76.4-169.6 -47.8 -7.4 0.6 -12.3 60 60 A Q < - 0 0 21 -3,-1.0 -1,-0.5 26,-0.1 26,-0.0 -0.353 50.9-165.3 -79.4 162.8 -4.9 -0.0 -9.4 61 61 A G S S+ 0 0 49 -3,-0.1 -28,-0.2 -2,-0.1 -1,-0.1 0.695 80.2 34.1-118.8 -36.7 -1.4 -1.6 -9.8 62 62 A G S S- 0 0 4 -30,-0.2 -30,-0.1 -29,-0.1 18,-0.0 -0.131 117.1 -86.9-117.5 42.2 -0.1 -2.6 -6.3 63 63 A Q S S- 0 0 23 1,-0.2 4,-0.2 -31,-0.1 -31,-0.1 0.962 90.4 -53.1 58.6 49.6 -3.3 -3.7 -4.3 64 64 A T S > S- 0 0 6 1,-0.1 3,-1.6 2,-0.1 -1,-0.2 0.932 80.6-178.9 48.1 48.1 -3.9 0.0 -3.3 65 65 A H T 3 S+ 0 0 28 1,-0.3 -1,-0.1 2,-0.1 -2,-0.1 0.831 76.7 42.6 -46.7 -38.2 -0.2 -0.0 -2.0 66 66 A Q T 3 S+ 0 0 4 1,-0.2 3,-0.4 -54,-0.1 -1,-0.3 -0.223 78.1 112.1-107.4 46.7 -0.6 3.6 -0.8 67 67 A D < + 0 0 23 -3,-1.6 -65,-0.5 -4,-0.2 -1,-0.2 0.764 59.1 75.2 -88.6 -23.1 -4.1 3.4 0.8 68 68 A P S S+ 0 0 3 0, 0.0 -61,-0.5 0, 0.0 -60,-0.4 0.144 71.1 124.6 -76.3 25.8 -3.0 4.0 4.5 69 69 A I S S- 0 0 5 -3,-0.4 2,-1.4 2,-0.2 7,-0.1 -0.187 85.0 -64.1 -74.8 174.8 -2.5 7.8 3.8 70 70 A P S S- 0 0 85 0, 0.0 4,-0.1 0, 0.0 -1,-0.1 -0.460 95.6 -58.9 -68.8 90.9 -4.3 10.4 6.0 71 71 A K S S- 0 0 79 -2,-1.4 -69,-0.2 -69,-0.5 3,-0.2 -0.330 92.3 -48.7 67.0-151.1 -8.0 9.7 5.0 72 72 A Q S S+ 0 0 144 1,-0.1 -1,-0.2 -71,-0.1 -5,-0.0 -0.264 92.2 115.7-117.2 54.4 -9.0 9.9 1.3 73 73 A P S S- 0 0 88 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.925 96.2 -67.8 -80.8 -47.6 -7.6 13.3 0.0 74 74 A S S S- 0 0 66 -3,-0.2 9,-0.6 -4,-0.1 2,-0.2 -0.132 72.3 -79.7-167.0 -85.7 -5.1 11.8 -2.5 75 75 A S - 0 0 27 7,-0.2 -8,-0.1 -7,-0.1 -1,-0.0 -0.947 52.6 -59.1-175.2-167.5 -2.0 9.7 -1.3 76 76 A Q > - 0 0 28 -2,-0.2 2,-2.1 -10,-0.2 3,-0.6 -0.866 41.1-137.6 -99.4 123.3 1.7 10.0 0.2 77 77 A P T 3 S+ 0 0 120 0, 0.0 -1,-0.0 0, 0.0 6,-0.0 -0.407 77.9 91.6 -78.3 66.0 4.1 12.0 -2.2 78 78 A R T 3 S- 0 0 112 -2,-2.1 -66,-0.0 2,-0.1 0, 0.0 0.688 106.2 -45.4-124.6 -49.3 7.1 9.6 -1.7 79 79 A G S < S+ 0 0 62 -3,-0.6 -67,-0.0 1,-0.1 0, 0.0 0.397 93.5 109.1-157.5 -41.6 7.1 6.8 -4.4 80 80 A D - 0 0 23 -4,-0.2 -2,-0.1 1,-0.1 -1,-0.1 -0.167 65.8-129.8 -51.2 142.5 3.7 5.1 -5.0 81 81 A P S S+ 0 0 92 0, 0.0 -1,-0.1 0, 0.0 2,-0.1 0.019 80.0 79.2 -85.7 27.9 2.0 6.0 -8.4 82 82 A T + 0 0 14 -6,-0.2 -7,-0.2 4,-0.1 -15,-0.0 -0.086 33.9 106.7-112.6-148.0 -1.5 7.0 -7.0 83 83 A G S S+ 0 0 11 -9,-0.6 2,-0.8 -17,-0.1 -1,-0.1 -0.782 103.4 29.7 111.2 -81.9 -2.7 10.3 -5.2 84 84 A P S S+ 0 0 124 0, 0.0 -10,-0.1 0, 0.0 -9,-0.0 -0.549 133.2 43.6-100.0 52.7 -4.9 11.8 -8.0 85 85 A K 0 0 81 -2,-0.8 -3,-0.1 -11,-0.1 -10,-0.0 0.306 360.0 360.0-163.4 -47.0 -5.4 8.1 -9.1 86 86 A E 0 0 106 -12,-0.1 -26,-0.1 -20,-0.1 -4,-0.1 0.484 360.0 360.0 56.4 360.0 -6.2 5.7 -6.0