==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 22-JUL-04 1U3J . COMPND 2 MOLECULE: NUCLEAR FACTOR NF-KAPPA-B P105 SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR D.Y.CHIRGADZE,M.DEMYDCHUK,M.BECKER,S.MORAN,M.PAOLI . 99 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6027.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 60.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 35 35.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 1 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 247 A N 0 0 152 0, 0.0 24,-0.1 0, 0.0 89,-0.1 0.000 360.0 360.0 360.0 -81.6 43.4 36.7 7.5 2 248 A L + 0 0 19 87,-0.1 89,-0.5 22,-0.1 2,-0.3 -0.209 360.0 172.8 -70.2 140.9 44.5 33.0 7.3 3 249 A K - 0 0 109 87,-0.2 22,-1.6 22,-0.2 2,-0.8 -0.972 32.8-144.1-153.9 130.4 46.7 31.4 10.0 4 250 A I E -A 24 0A 1 87,-0.3 20,-0.2 -2,-0.3 3,-0.1 -0.878 23.0-179.6 -88.8 109.8 48.0 28.0 10.9 5 251 A V E - 0 0 72 18,-2.5 2,-0.3 -2,-0.8 19,-0.2 0.869 62.4 -16.5 -81.9 -38.0 47.9 28.2 14.7 6 252 A R E -A 23 0A 174 17,-1.7 17,-3.0 -3,-0.1 2,-0.4 -0.970 50.7-156.5-164.0 151.8 49.3 24.7 15.3 7 253 A M E -A 22 0A 19 -2,-0.3 15,-0.2 15,-0.2 3,-0.1 -0.982 17.9-142.5-128.0 141.1 49.9 21.4 13.6 8 254 A D S S+ 0 0 98 13,-2.5 2,-0.3 -2,-0.4 14,-0.1 0.642 92.0 28.8 -78.8 -15.8 50.2 18.1 15.5 9 255 A R - 0 0 93 12,-0.3 -1,-0.2 1,-0.0 3,-0.0 -0.985 53.0-178.1-140.9 135.1 53.0 16.8 13.2 10 256 A T S S+ 0 0 88 -2,-0.3 86,-2.1 -3,-0.1 2,-0.3 0.048 74.6 51.4-116.4 20.8 55.5 18.9 11.2 11 257 A A E +e 96 0B 25 84,-0.2 2,-0.3 86,-0.0 86,-0.2 -0.978 62.1 168.4-149.2 159.4 57.1 15.9 9.5 12 258 A G E -e 97 0B 0 84,-2.1 86,-2.1 -2,-0.3 2,-0.1 -0.986 39.8 -76.3-171.2 162.6 55.9 13.0 7.6 13 259 A C E > -e 98 0B 16 -2,-0.3 3,-2.1 84,-0.2 5,-0.2 -0.356 40.7-125.2 -68.6 136.9 56.7 10.0 5.4 14 260 A V T 3 S+ 0 0 0 84,-2.0 52,-2.5 1,-0.3 -1,-0.1 0.619 106.4 65.9 -56.6 -20.4 57.5 10.9 1.8 15 261 A T T 3 S- 0 0 41 50,-0.2 -1,-0.3 1,-0.2 50,-0.2 0.555 94.8-152.6 -80.9 -9.1 54.8 8.5 0.6 16 262 A G < + 0 0 13 -3,-2.1 -1,-0.2 48,-0.3 49,-0.1 -0.111 57.4 114.9 66.4-168.5 52.0 10.6 2.1 17 263 A G + 0 0 50 46,-3.1 2,-0.4 1,-0.2 -1,-0.1 0.619 46.0 137.3 76.7 19.5 48.7 9.5 3.4 18 264 A E - 0 0 61 -5,-0.2 45,-2.2 46,-0.1 2,-0.3 -0.833 54.9-119.4-102.7 132.9 49.3 10.3 7.0 19 265 A E E - B 0 62A 112 -2,-0.4 2,-0.4 43,-0.2 43,-0.2 -0.480 33.2-179.2 -72.1 128.3 46.6 12.1 9.0 20 266 A I E - B 0 61A 1 41,-3.3 41,-2.3 -2,-0.3 2,-0.5 -0.977 19.7-143.3-127.9 144.7 47.5 15.5 10.5 21 267 A M E - B 0 60A 91 -2,-0.4 -13,-2.5 39,-0.2 2,-0.4 -0.940 19.5-172.8-106.2 126.2 45.4 17.8 12.7 22 268 A L E -AB 7 59A 0 37,-2.3 37,-2.7 -2,-0.5 2,-0.4 -0.974 13.2-151.4-122.6 128.7 45.8 21.5 12.1 23 269 A L E +AB 6 58A 82 -17,-3.0 -18,-2.5 -2,-0.4 -17,-1.7 -0.887 27.7 168.5 -97.6 134.7 44.3 24.2 14.2 24 270 A C E -A 4 0A 4 33,-2.0 -20,-0.2 -2,-0.4 3,-0.2 -0.923 38.6 -99.2-140.8 161.3 43.6 27.5 12.2 25 271 A D S S- 0 0 70 -22,-1.6 -22,-0.2 -2,-0.3 -20,-0.1 -0.249 79.6 -42.6 -72.8 178.2 41.8 30.7 12.6 26 272 A K + 0 0 111 -24,-0.1 2,-0.3 31,-0.1 31,-0.2 -0.175 69.4 170.5 -60.4 128.1 38.4 30.8 10.9 27 273 A V - 0 0 4 29,-2.1 2,-0.6 -3,-0.2 5,-0.1 -0.823 37.6-113.1-123.2 165.3 38.1 29.3 7.5 28 274 A Q > - 0 0 112 3,-0.3 3,-2.1 -2,-0.3 -2,-0.0 -0.881 24.3-142.4 -97.1 122.2 35.3 28.5 5.1 29 275 A K T 3 S+ 0 0 100 -2,-0.6 3,-0.4 1,-0.3 -1,-0.1 0.748 99.8 45.5 -61.8 -26.8 35.1 24.7 4.7 30 276 A D T 3 S+ 0 0 106 1,-0.2 -1,-0.3 20,-0.1 -2,-0.0 0.420 115.0 48.4 -93.1 0.1 34.2 24.9 1.0 31 277 A D S < S+ 0 0 37 -3,-2.1 2,-0.4 53,-0.1 -3,-0.3 -0.256 91.7 94.6-136.0 45.5 36.9 27.5 0.2 32 278 A I + 0 0 5 -3,-0.4 2,-0.3 51,-0.2 51,-0.2 -0.999 38.6 171.4-141.6 140.5 40.0 26.2 1.9 33 279 A Q E -F 82 0B 33 49,-2.1 49,-2.0 -2,-0.4 2,-0.5 -0.932 27.7-130.5-139.2 162.0 43.0 24.1 0.8 34 280 A I E -F 81 0B 0 12,-0.3 12,-2.6 -2,-0.3 2,-0.5 -0.979 25.9-161.0-117.1 115.2 46.4 23.0 2.4 35 281 A R E -FG 80 45B 30 45,-3.0 45,-2.6 -2,-0.5 2,-0.4 -0.884 10.1-168.5-107.0 121.6 49.3 23.6 0.1 36 282 A F E +FG 79 44B 0 8,-3.1 8,-2.3 -2,-0.5 2,-0.3 -0.887 25.2 169.7 -98.7 136.0 52.6 21.9 0.6 37 283 A Y E -FG 78 43B 20 41,-2.6 41,-2.7 -2,-0.4 2,-0.3 -0.987 29.7-162.6-152.3 159.9 55.3 23.4 -1.6 38 284 A E E G 0 42B 36 4,-2.2 4,-2.6 -2,-0.3 39,-0.1 -0.972 360.0 360.0-144.3 122.1 59.0 23.6 -2.4 39 285 A E 0 0 173 -2,-0.3 -2,-0.0 2,-0.2 4,-0.0 -0.468 360.0 360.0 -69.4 360.0 60.7 26.4 -4.5 40 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 41 291 A V 0 0 124 0, 0.0 2,-0.3 0, 0.0 -2,-0.2 0.000 360.0 360.0 360.0 118.4 57.9 25.1 -7.7 42 292 A W E +G 38 0B 45 -4,-2.6 -4,-2.2 2,-0.0 2,-0.3 -0.719 360.0 179.8 -82.5 143.8 56.7 21.6 -6.6 43 293 A E E +G 37 0B 83 -2,-0.3 2,-0.3 -6,-0.2 -6,-0.2 -0.992 13.7 175.1-143.3 151.8 53.3 21.6 -4.9 44 294 A G E -G 36 0B 10 -8,-2.3 -8,-3.1 -2,-0.3 2,-0.4 -0.963 22.2-130.8-145.6 157.3 51.0 19.0 -3.3 45 295 A F E -G 35 0B 72 -2,-0.3 -10,-0.2 -10,-0.2 20,-0.1 -0.922 20.7-108.5-122.2 142.9 47.7 19.4 -1.5 46 296 A G - 0 0 12 -12,-2.6 2,-0.7 -2,-0.4 -12,-0.3 -0.331 36.8-125.0 -58.3 140.0 46.4 18.0 1.7 47 297 A D B +C 62 0A 103 15,-3.0 15,-2.1 -14,-0.1 2,-0.3 -0.831 58.8 113.1 -98.2 111.0 43.7 15.4 1.1 48 298 A F - 0 0 38 -2,-0.7 13,-0.1 13,-0.2 11,-0.0 -0.973 49.5-131.9-163.2 159.7 40.5 16.2 2.9 49 299 A S > - 0 0 47 -2,-0.3 3,-2.5 1,-0.0 4,-0.3 -0.770 41.1 -93.2-113.1 171.5 36.9 17.2 2.2 50 300 A P G > S+ 0 0 46 0, 0.0 3,-1.4 0, 0.0 -20,-0.1 0.812 123.4 62.0 -52.1 -32.9 34.7 20.0 3.7 51 301 A T G 3 S+ 0 0 124 1,-0.2 -22,-0.0 3,-0.1 -3,-0.0 0.684 94.1 62.9 -65.9 -19.3 33.4 17.6 6.3 52 302 A D G < S+ 0 0 68 -3,-2.5 8,-2.5 -23,-0.1 2,-0.6 0.416 82.6 93.9 -84.5 -1.7 37.0 17.2 7.7 53 303 A V E < S-D 59 0A 13 -3,-1.4 2,-0.9 -4,-0.3 6,-0.3 -0.859 75.8-140.7 -91.7 124.8 37.0 20.8 8.7 54 304 A H E >> -D 58 0A 125 4,-2.8 3,-2.4 -2,-0.6 4,-0.6 -0.794 65.0 -42.6-101.1 105.1 35.9 21.1 12.3 55 305 A R T 34 S- 0 0 185 -2,-0.9 -1,-0.2 1,-0.3 -29,-0.0 0.795 104.7 -69.0 48.0 36.5 33.6 24.1 13.0 56 306 A Q T 34 S+ 0 0 52 2,-0.2 -29,-2.1 1,-0.1 -1,-0.3 0.485 128.9 81.2 68.7 7.5 35.8 26.3 10.8 57 307 A F T <4 S+ 0 0 103 -3,-2.4 -33,-2.0 1,-0.2 2,-0.3 0.368 90.6 30.6-128.4 2.5 38.7 26.2 13.3 58 308 A A E < -BD 23 54A 10 -4,-0.6 -4,-2.8 -35,-0.3 2,-0.4 -0.980 57.4-155.0-157.8 157.2 40.5 22.9 12.5 59 309 A I E -BD 22 53A 0 -37,-2.7 -37,-2.3 -2,-0.3 2,-0.5 -0.995 3.4-159.3-137.4 128.9 41.2 20.6 9.7 60 310 A V E +B 21 0A 33 -8,-2.5 2,-0.3 -2,-0.4 -39,-0.2 -0.943 34.6 149.2-104.9 127.6 42.0 16.9 9.7 61 311 A F E -B 20 0A 2 -41,-2.3 -41,-3.3 -2,-0.5 2,-0.4 -0.941 43.1-110.7-150.8 167.1 43.7 15.9 6.5 62 312 A K E -BC 19 47A 87 -15,-2.1 -15,-3.0 -2,-0.3 -43,-0.2 -0.851 37.6-109.4-108.7 139.3 46.2 13.5 4.9 63 313 A T - 0 0 5 -45,-2.2 -46,-3.1 -2,-0.4 2,-0.2 -0.311 30.4-119.0 -63.4 145.9 49.6 14.5 3.6 64 314 A P - 0 0 15 0, 0.0 -48,-0.3 0, 0.0 2,-0.2 -0.502 34.2 -97.6 -76.8 156.3 50.3 14.5 -0.1 65 315 A K - 0 0 126 -50,-0.2 -50,-0.2 -2,-0.2 -51,-0.1 -0.476 43.0-118.3 -65.0 139.5 53.0 12.3 -1.5 66 316 A Y - 0 0 13 -52,-2.5 3,-0.2 -2,-0.2 -1,-0.1 -0.342 25.6-105.2 -77.7 165.4 56.2 14.2 -2.0 67 317 A K S S+ 0 0 126 1,-0.2 2,-0.4 -2,-0.1 -1,-0.1 0.709 109.9 37.0 -66.3 -22.4 57.7 14.6 -5.6 68 318 A D > - 0 0 67 1,-0.1 3,-1.1 -54,-0.1 -1,-0.2 -0.861 57.0-177.8-137.2 100.4 60.4 12.0 -4.9 69 319 A V T 3 S+ 0 0 53 -2,-0.4 31,-0.5 1,-0.2 -54,-0.1 0.495 81.9 66.5 -76.1 -1.0 59.7 8.9 -2.8 70 320 A N T 3 + 0 0 129 29,-0.1 -1,-0.2 -56,-0.1 0, 0.0 0.127 66.3 140.7-104.7 15.7 63.4 7.8 -3.2 71 321 A I < - 0 0 29 -3,-1.1 29,-0.2 1,-0.1 -57,-0.1 -0.308 40.0-158.2 -59.1 144.7 65.0 10.6 -1.2 72 322 A T S S+ 0 0 129 1,-0.1 -1,-0.1 27,-0.1 -3,-0.0 0.620 76.2 29.1-100.8 -18.0 67.8 9.4 0.9 73 323 A K S S- 0 0 151 25,-0.1 -1,-0.1 1,-0.0 24,-0.1 -0.917 103.7 -68.8-139.3 162.3 67.7 12.3 3.4 74 324 A P - 0 0 78 0, 0.0 2,-0.5 0, 0.0 24,-0.2 -0.153 39.6-145.4 -59.8 144.1 64.9 14.6 4.6 75 325 A A E - H 0 97B 11 22,-2.6 22,-2.7 -4,-0.1 2,-0.5 -0.952 11.0-141.2-114.7 116.6 63.4 17.2 2.2 76 326 A S E + H 0 96B 85 -2,-0.5 2,-0.2 20,-0.2 20,-0.2 -0.675 32.2 162.0 -82.7 121.0 62.4 20.6 3.8 77 327 A V E - H 0 95B 3 18,-3.5 18,-2.4 -2,-0.5 2,-0.3 -0.705 31.6-116.5-124.2 177.9 59.1 22.0 2.4 78 328 A F E -FH 37 94B 77 -41,-2.7 -41,-2.6 16,-0.2 2,-0.4 -0.888 15.3-155.8-114.7 155.6 56.6 24.6 3.4 79 329 A V E +FH 36 93B 0 14,-2.2 14,-2.3 -2,-0.3 2,-0.3 -0.996 18.9 168.0-127.3 132.9 52.9 24.3 4.3 80 330 A Q E -F 35 0B 13 -45,-2.6 -45,-3.0 -2,-0.4 2,-0.3 -0.987 35.3-118.9-137.4 151.6 50.3 27.1 4.0 81 331 A L E -F 34 0B 0 -2,-0.3 9,-2.3 10,-0.3 2,-0.3 -0.671 35.4-172.1 -72.6 145.9 46.6 27.5 4.1 82 332 A R E -FI 33 89B 41 -49,-2.0 -49,-2.1 -2,-0.3 2,-0.4 -0.989 23.1-130.3-143.5 132.7 45.3 28.9 0.9 83 333 A R > - 0 0 49 5,-2.8 4,-1.5 -2,-0.3 -51,-0.2 -0.701 16.1-145.7 -79.3 130.7 41.8 30.1 0.0 84 334 A K T 4 S+ 0 0 119 -2,-0.4 -1,-0.1 -53,-0.3 -52,-0.1 0.865 90.6 56.1 -66.5 -34.1 40.6 28.5 -3.2 85 335 A S T 4 S+ 0 0 82 -54,-0.2 -1,-0.2 1,-0.2 -53,-0.1 0.900 129.5 5.1 -71.0 -49.4 38.6 31.5 -4.4 86 336 A D T 4 S- 0 0 82 2,-0.1 -1,-0.2 0, 0.0 -2,-0.2 0.241 94.2-119.1-122.2 11.5 41.2 34.3 -4.4 87 337 A L < + 0 0 100 -4,-1.5 -3,-0.1 1,-0.2 2,-0.1 0.670 51.1 164.1 57.9 23.0 44.4 32.4 -3.5 88 338 A E - 0 0 104 -5,-0.1 -5,-2.8 -6,-0.1 2,-0.3 -0.469 21.6-156.9 -65.1 145.1 45.0 34.3 -0.3 89 339 A T B -I 82 0B 59 -7,-0.2 -7,-0.2 -87,-0.1 2,-0.2 -0.869 16.3-124.6-126.5 155.7 47.5 32.4 1.9 90 340 A S - 0 0 2 -9,-2.3 -87,-0.2 -2,-0.3 3,-0.1 -0.495 50.5 -84.1 -77.2 165.5 48.7 32.0 5.5 91 341 A E - 0 0 150 -89,-0.5 -87,-0.3 -2,-0.2 -10,-0.3 -0.493 61.4-104.4 -57.7 139.9 52.3 32.5 6.4 92 342 A P - 0 0 43 0, 0.0 -12,-0.2 0, 0.0 -1,-0.1 -0.307 25.1-149.2 -77.9 155.8 54.0 29.2 5.8 93 343 A K E - H 0 79B 66 -14,-2.3 -14,-2.2 -3,-0.1 2,-0.1 -0.981 26.4-112.9-118.0 138.0 55.1 26.6 8.3 94 344 A P E - H 0 78B 91 0, 0.0 2,-0.3 0, 0.0 -16,-0.2 -0.465 35.3-175.5 -70.2 150.7 58.2 24.4 7.7 95 345 A F E - H 0 77B 3 -18,-2.4 -18,-3.5 -2,-0.1 2,-0.6 -0.992 13.9-144.8-149.4 135.1 57.6 20.7 7.2 96 346 A L E -eH 11 76B 76 -86,-2.1 -84,-2.1 -2,-0.3 2,-0.4 -0.919 3.5-156.7-109.8 120.5 60.1 17.9 6.7 97 347 A Y E -eH 12 75B 0 -22,-2.7 -22,-2.6 -2,-0.6 -84,-0.2 -0.822 17.5-157.0 -87.3 135.5 59.5 14.9 4.5 98 348 A Y E -e 13 0B 81 -86,-2.1 -84,-2.0 -2,-0.4 -27,-0.1 -0.836 23.8 -94.3-115.4 150.8 61.5 11.9 5.6 99 349 A P 0 0 36 0, 0.0 -27,-0.1 0, 0.0 -29,-0.1 -0.175 360.0 360.0 -59.0 148.0 62.7 8.8 3.5 100 350 A E 0 0 193 -31,-0.5 -87,-0.0 -29,-0.2 0, 0.0 -0.460 360.0 360.0 -69.2 360.0 60.5 5.8 3.7