==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 22-JUL-04 1U3Y . COMPND 2 MOLECULE: NUCLEAR FACTOR NF-KAPPA-B P105 SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR D.Y.CHIRGADZE,M.DEMYDCHUK,M.BECKER,S.MORAN,M.PAOLI . 98 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5970.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 62.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 34 34.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 11.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 2 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 247 A N 0 0 139 0, 0.0 88,-0.1 0, 0.0 25,-0.1 0.000 360.0 360.0 360.0 159.4 43.7 36.5 7.0 2 248 A L + 0 0 15 86,-0.2 88,-0.5 78,-0.1 2,-0.3 -0.172 360.0 172.4 -81.7 142.4 45.0 32.9 7.2 3 249 A K - 0 0 99 86,-0.2 22,-1.8 22,-0.2 2,-0.8 -0.966 30.2-144.7-153.6 128.9 47.2 31.4 9.9 4 250 A I E +A 24 0A 2 -2,-0.3 20,-0.2 86,-0.3 3,-0.1 -0.866 23.2 178.9 -88.0 111.9 48.4 28.0 10.8 5 251 A V E - 0 0 69 18,-2.6 2,-0.3 -2,-0.8 19,-0.2 0.859 62.3 -13.1 -85.6 -39.0 48.4 28.1 14.6 6 252 A R E -A 23 0A 183 17,-1.6 17,-3.0 -3,-0.1 2,-0.3 -0.991 49.8-162.2-160.1 150.5 49.6 24.6 15.2 7 253 A M E -A 22 0A 22 -2,-0.3 15,-0.2 15,-0.2 3,-0.1 -0.996 19.7-142.8-130.9 141.1 50.2 21.3 13.5 8 254 A D S S+ 0 0 97 13,-2.0 2,-0.4 -2,-0.3 14,-0.1 0.679 92.2 32.9 -77.1 -15.2 50.7 18.0 15.4 9 255 A R + 0 0 108 12,-0.2 -1,-0.2 1,-0.1 3,-0.1 -0.997 52.1 179.0-137.0 136.0 53.3 16.8 13.0 10 256 A T S S+ 0 0 84 -2,-0.4 85,-2.3 -3,-0.1 2,-0.3 0.098 74.2 50.5-119.5 20.2 55.9 19.0 11.1 11 257 A A E +e 95 0B 19 83,-0.2 2,-0.3 64,-0.0 85,-0.2 -0.979 60.8 167.8-146.6 160.3 57.5 16.0 9.3 12 258 A G E -e 96 0B 0 83,-2.2 85,-2.5 -2,-0.3 2,-0.1 -0.991 38.6 -84.0-166.5 164.2 56.4 13.0 7.3 13 259 A C E > -e 97 0B 11 -2,-0.3 3,-1.9 83,-0.2 5,-0.2 -0.442 38.6-121.0 -75.9 145.0 57.4 10.2 5.1 14 260 A V T 3 S+ 0 0 0 83,-2.1 51,-2.6 1,-0.3 -1,-0.1 0.653 107.4 71.5 -56.3 -21.7 57.8 10.9 1.4 15 261 A T T 3 S- 0 0 61 49,-0.2 -1,-0.3 1,-0.2 49,-0.2 0.661 91.9-155.4 -74.8 -15.2 55.1 8.3 0.6 16 262 A G < + 0 0 12 -3,-1.9 -1,-0.2 47,-0.2 48,-0.1 -0.159 56.2 110.0 75.8-172.4 52.4 10.6 2.0 17 263 A G + 0 0 44 45,-3.3 2,-0.4 1,-0.2 -1,-0.1 0.608 46.3 140.1 79.4 14.1 49.0 9.6 3.3 18 264 A E - 0 0 66 -5,-0.2 44,-1.9 45,-0.1 -1,-0.2 -0.767 53.2-117.8 -96.1 135.6 49.8 10.4 6.9 19 265 A E E + B 0 61A 127 -2,-0.4 2,-0.4 42,-0.2 42,-0.2 -0.502 34.6 177.5 -76.7 132.4 47.1 12.0 9.1 20 266 A I E - B 0 60A 4 40,-2.8 40,-2.3 -2,-0.2 2,-0.5 -0.975 22.2-145.4-128.7 142.5 47.8 15.5 10.5 21 267 A I E - B 0 59A 77 -2,-0.4 -13,-2.0 38,-0.2 2,-0.4 -0.976 19.9-169.9-105.6 121.4 45.7 17.8 12.6 22 268 A L E -AB 7 58A 0 36,-2.7 36,-2.5 -2,-0.5 2,-0.4 -0.914 11.1-151.2-110.6 131.5 46.2 21.4 11.8 23 269 A L E +AB 6 57A 78 -17,-3.0 -18,-2.6 -2,-0.4 -17,-1.6 -0.896 27.5 169.2-101.5 132.6 44.8 24.2 14.0 24 270 A C E -A 4 0A 5 32,-2.1 -20,-0.2 -2,-0.4 3,-0.1 -0.906 38.4 -99.1-136.7 162.4 44.0 27.4 12.0 25 271 A D S S- 0 0 72 -22,-1.8 -22,-0.2 -2,-0.3 -20,-0.1 -0.279 80.1 -44.1 -73.1 176.2 42.3 30.7 12.4 26 272 A K S S+ 0 0 125 -25,-0.1 2,-0.3 -24,-0.1 30,-0.2 -0.188 70.0 168.9 -61.9 128.1 38.9 30.9 10.9 27 273 A V - 0 0 6 28,-2.1 2,-0.5 -3,-0.1 5,-0.1 -0.831 37.2-113.6-120.9 166.5 38.5 29.3 7.4 28 274 A Q > - 0 0 114 3,-0.3 3,-2.3 -2,-0.3 -2,-0.0 -0.898 24.5-138.4 -97.6 125.3 35.6 28.4 5.1 29 275 A K T 3 S+ 0 0 100 -2,-0.5 3,-0.3 1,-0.3 22,-0.1 0.724 101.9 44.2 -60.4 -25.9 35.4 24.6 4.7 30 276 A D T 3 S+ 0 0 106 1,-0.2 -1,-0.3 19,-0.1 0, 0.0 0.386 114.5 50.5 -94.5 1.0 34.7 24.8 0.9 31 277 A D S < S+ 0 0 37 -3,-2.3 2,-0.4 52,-0.1 -3,-0.3 -0.273 91.1 91.3-134.9 46.6 37.3 27.5 0.2 32 278 A I + 0 0 6 -3,-0.3 2,-0.3 50,-0.2 50,-0.2 -1.000 39.9 173.8-147.9 138.4 40.4 26.2 1.8 33 279 A Q E -F 81 0B 33 48,-1.9 48,-2.1 -2,-0.4 2,-0.5 -0.933 26.5-133.1-134.7 164.5 43.4 24.1 0.8 34 280 A I E -F 80 0B 0 11,-0.3 11,-2.9 -2,-0.3 2,-0.5 -0.975 26.2-162.5-121.3 113.1 46.7 23.1 2.3 35 281 A R E -FG 79 44B 28 44,-2.7 44,-2.4 -2,-0.5 2,-0.4 -0.879 10.0-166.6-106.3 122.2 49.6 23.6 -0.0 36 282 A F E +FG 78 43B 0 7,-3.2 7,-2.4 -2,-0.5 2,-0.3 -0.887 26.1 167.2 -98.9 134.4 53.0 21.9 0.4 37 283 A Y E FG 77 42B 43 40,-2.6 40,-2.6 -2,-0.4 5,-0.2 -0.985 360.0 360.0-150.1 164.2 55.6 23.4 -1.8 38 284 A E 0 0 82 3,-2.0 3,-1.8 -2,-0.3 38,-0.1 -0.981 360.0 360.0-143.9 360.0 59.3 23.7 -2.6 39 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 40 291 A V 0 0 149 0, 0.0 2,-0.3 0, 0.0 -3,-0.0 0.000 360.0 360.0 360.0 118.4 58.1 25.0 -7.9 41 292 A W + 0 0 47 -3,-1.8 -3,-2.0 2,-0.0 2,-0.3 -0.673 360.0 179.2 -81.3 142.3 56.9 21.6 -6.7 42 293 A E E +G 37 0B 83 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.994 13.0 174.9-144.4 149.1 53.5 21.6 -5.0 43 294 A G E -G 36 0B 10 -7,-2.4 -7,-3.2 -2,-0.3 2,-0.4 -0.959 22.5-129.7-143.8 159.1 51.3 19.0 -3.5 44 295 A F E -G 35 0B 71 -2,-0.3 -9,-0.2 -9,-0.2 20,-0.1 -0.914 20.3-108.1-123.8 139.1 48.1 19.3 -1.6 45 296 A G - 0 0 11 -11,-2.9 2,-0.7 -2,-0.4 -11,-0.3 -0.355 37.0-126.2 -54.0 137.0 46.7 18.0 1.7 46 297 A D B +C 61 0A 110 15,-2.9 15,-1.8 -13,-0.1 2,-0.3 -0.790 58.2 116.8 -95.9 109.0 44.1 15.3 1.0 47 298 A F - 0 0 36 -2,-0.7 13,-0.1 13,-0.2 11,-0.0 -0.973 49.4-132.6-161.6 164.1 40.9 16.2 2.9 48 299 A S > - 0 0 46 -2,-0.3 3,-2.2 11,-0.3 4,-0.3 -0.786 39.5 -97.0-118.0 167.7 37.3 17.1 2.2 49 300 A P G > S+ 0 0 49 0, 0.0 3,-1.6 0, 0.0 -18,-0.1 0.831 122.5 62.1 -55.6 -31.4 35.1 19.9 3.7 50 301 A T G 3 S+ 0 0 122 1,-0.3 -21,-0.0 3,-0.1 -3,-0.0 0.685 94.1 63.6 -67.3 -18.1 33.7 17.6 6.3 51 302 A D G < S+ 0 0 66 -3,-2.2 8,-2.3 -22,-0.1 2,-0.6 0.469 81.6 94.8 -83.1 -4.4 37.3 17.2 7.6 52 303 A V E < S-D 58 0A 12 -3,-1.6 2,-0.9 -4,-0.3 6,-0.3 -0.834 75.1-142.8 -88.0 120.8 37.3 20.9 8.5 53 304 A H E >> -D 57 0A 125 4,-2.7 3,-2.4 -2,-0.6 4,-0.7 -0.771 64.4 -42.6 -97.8 103.3 36.3 21.1 12.1 54 305 A R T 34 S- 0 0 182 -2,-0.9 -1,-0.2 1,-0.3 4,-0.1 0.788 104.0 -69.3 51.4 35.0 34.0 24.1 12.9 55 306 A Q T 34 S+ 0 0 46 2,-0.2 -28,-2.1 1,-0.1 -1,-0.3 0.449 129.3 80.1 69.6 6.2 36.2 26.4 10.7 56 307 A F T <4 S+ 0 0 106 -3,-2.4 -32,-2.1 1,-0.2 2,-0.3 0.417 90.5 32.7-126.6 -1.4 39.1 26.2 13.1 57 308 A A E < -BD 23 53A 8 -4,-0.7 -4,-2.7 -34,-0.2 2,-0.4 -0.980 57.4-154.6-152.5 155.4 40.9 22.9 12.5 58 309 A I E -BD 22 52A 0 -36,-2.5 -36,-2.7 -2,-0.3 2,-0.6 -0.994 3.3-159.0-135.3 124.4 41.6 20.6 9.5 59 310 A C E +B 21 0A 43 -8,-2.3 2,-0.3 -2,-0.4 -11,-0.3 -0.923 35.4 150.7 -97.5 123.3 42.3 16.9 9.6 60 311 A F E -B 20 0A 2 -40,-2.3 -40,-2.8 -2,-0.6 2,-0.4 -0.926 43.3-115.9-147.3 169.4 44.1 15.9 6.4 61 312 A K E -BC 19 46A 84 -15,-1.8 -15,-2.9 -2,-0.3 -42,-0.2 -0.903 37.8-109.8-112.2 140.3 46.5 13.4 4.9 62 313 A T - 0 0 4 -44,-1.9 -45,-3.3 -2,-0.4 2,-0.2 -0.334 30.9-116.9 -65.0 148.0 49.9 14.5 3.6 63 314 A P - 0 0 16 0, 0.0 -47,-0.2 0, 0.0 2,-0.2 -0.479 35.5 -96.6 -75.5 154.7 50.6 14.5 -0.1 64 315 A K - 0 0 138 -49,-0.2 -49,-0.2 -2,-0.2 -50,-0.1 -0.476 44.9-115.8 -63.0 137.5 53.2 12.2 -1.6 65 316 A Y - 0 0 11 -51,-2.6 3,-0.2 -2,-0.2 -1,-0.1 -0.370 26.2-105.0 -74.2 163.9 56.5 14.1 -2.1 66 317 A K S S+ 0 0 125 1,-0.2 2,-0.4 -2,-0.1 -1,-0.1 0.771 109.3 33.5 -63.2 -26.6 57.9 14.7 -5.6 67 318 A D > - 0 0 66 1,-0.1 3,-1.0 -53,-0.0 -1,-0.2 -0.916 56.8-177.0-139.2 105.0 60.6 12.0 -5.1 68 319 A V T 3 S+ 0 0 38 -2,-0.4 31,-0.5 1,-0.2 -53,-0.1 0.448 81.9 67.0 -81.9 1.1 60.0 8.9 -3.0 69 320 A N T 3 + 0 0 126 29,-0.1 -1,-0.2 -55,-0.1 -2,-0.0 0.223 66.5 135.1-107.5 12.4 63.6 7.8 -3.6 70 321 A I < - 0 0 29 -3,-1.0 29,-0.2 1,-0.1 -56,-0.1 -0.275 43.8-155.7 -57.6 150.8 65.3 10.6 -1.6 71 322 A T S S+ 0 0 132 27,-0.1 -1,-0.1 1,-0.1 -3,-0.0 0.433 75.7 32.2-111.1 -8.5 68.1 9.3 0.6 72 323 A K S S- 0 0 152 24,-0.0 -1,-0.1 25,-0.0 24,-0.0 -0.938 101.8 -71.9-143.6 162.5 68.0 12.3 3.1 73 324 A P - 0 0 78 0, 0.0 2,-0.5 0, 0.0 24,-0.2 -0.224 38.9-147.0 -59.9 146.6 65.3 14.6 4.4 74 325 A A E - H 0 96B 12 22,-2.5 22,-2.9 -4,-0.1 2,-0.5 -0.966 9.8-141.2-118.4 122.3 63.8 17.3 2.1 75 326 A S E + H 0 95B 71 -2,-0.5 20,-0.2 20,-0.2 2,-0.2 -0.744 31.8 161.2 -91.4 124.4 62.7 20.6 3.6 76 327 A V E - H 0 94B 0 18,-3.4 18,-2.5 -2,-0.5 2,-0.3 -0.652 31.8-115.9-126.5-179.4 59.5 22.0 2.2 77 328 A F E -FH 37 93B 90 -40,-2.6 -40,-2.6 16,-0.2 2,-0.4 -0.901 15.4-156.2-119.5 155.6 56.9 24.6 3.3 78 329 A V E +FH 36 92B 0 14,-2.1 14,-2.5 -2,-0.3 2,-0.3 -0.995 18.3 169.1-129.0 137.6 53.3 24.2 4.0 79 330 A Q E -F 35 0B 13 -44,-2.4 -44,-2.7 -2,-0.4 2,-0.3 -0.979 34.7-116.6-139.2 153.6 50.7 27.1 3.8 80 331 A L E -F 34 0B 0 -2,-0.3 9,-2.2 10,-0.3 2,-0.3 -0.677 35.4-171.7 -76.5 148.8 46.9 27.5 4.0 81 332 A R E -FI 33 88B 40 -48,-2.1 -48,-1.9 -2,-0.3 2,-0.3 -0.973 22.7-131.4-144.4 130.5 45.5 28.9 0.7 82 333 A R > - 0 0 67 5,-2.7 4,-1.3 -2,-0.3 -50,-0.2 -0.639 15.6-146.0 -76.8 133.9 42.0 30.1 -0.1 83 334 A K T 4 S+ 0 0 119 -2,-0.3 -1,-0.1 2,-0.2 -51,-0.1 0.861 91.4 55.4 -69.9 -32.2 40.9 28.5 -3.3 84 335 A S T 4 S+ 0 0 83 -53,-0.2 -1,-0.2 1,-0.2 -52,-0.1 0.929 128.9 7.1 -71.7 -49.9 38.9 31.5 -4.5 85 336 A D T 4 S- 0 0 86 2,-0.1 -1,-0.2 0, 0.0 -2,-0.2 0.227 93.2-120.7-121.6 8.0 41.5 34.3 -4.4 86 337 A L < + 0 0 100 -4,-1.3 -3,-0.1 1,-0.2 2,-0.1 0.631 51.5 163.5 59.3 19.3 44.7 32.4 -3.7 87 338 A E - 0 0 85 -6,-0.1 -5,-2.7 -5,-0.1 2,-0.3 -0.420 21.3-156.2 -64.0 141.2 45.3 34.3 -0.4 88 339 A T B -I 81 0B 49 -7,-0.2 -7,-0.2 -86,-0.1 2,-0.2 -0.856 15.4-126.5-123.5 156.7 47.9 32.4 1.7 89 340 A S - 0 0 2 -9,-2.2 -86,-0.2 -2,-0.3 3,-0.1 -0.477 50.7 -82.6 -80.9 168.1 49.0 32.1 5.3 90 341 A E - 0 0 158 -88,-0.5 -86,-0.3 -2,-0.2 -10,-0.3 -0.469 61.0-104.5 -61.6 145.0 52.7 32.5 6.2 91 342 A P - 0 0 46 0, 0.0 -12,-0.2 0, 0.0 -1,-0.1 -0.423 26.4-150.8 -78.9 152.7 54.4 29.2 5.5 92 343 A K E - H 0 78B 86 -14,-2.5 -14,-2.1 -2,-0.1 2,-0.1 -0.963 26.5-110.3-114.1 139.9 55.5 26.7 8.1 93 344 A P E - H 0 77B 81 0, 0.0 2,-0.3 0, 0.0 -16,-0.2 -0.428 35.2-174.4 -67.9 148.2 58.6 24.5 7.5 94 345 A F E - H 0 76B 2 -18,-2.5 -18,-3.4 -2,-0.1 2,-0.6 -0.992 13.6-144.4-144.9 133.1 57.9 20.8 7.0 95 346 A L E -eH 11 75B 76 -85,-2.3 -83,-2.2 -2,-0.3 2,-0.4 -0.898 5.5-159.0-106.1 117.4 60.4 18.0 6.6 96 347 A Y E -eH 12 74B 0 -22,-2.9 -22,-2.5 -2,-0.6 -83,-0.2 -0.764 16.3-163.5 -85.0 136.9 59.9 15.0 4.3 97 348 A Y E -e 13 0B 78 -85,-2.5 -83,-2.1 -2,-0.4 -27,-0.1 -0.887 23.3 -94.0-123.6 153.1 62.0 11.9 5.2 98 349 A P 0 0 36 0, 0.0 -27,-0.1 0, 0.0 -29,-0.1 -0.133 360.0 360.0 -61.2 152.0 62.9 8.8 3.3 99 350 A E 0 0 193 -31,-0.5 0, 0.0 -29,-0.2 0, 0.0 -0.504 360.0 360.0 -71.1 360.0 60.9 5.6 3.5