==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 27-JUL-04 1U57 . COMPND 2 MOLECULE: GAG POLYPROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR N.MORELLET,S.DRUILLENNEC,C.LENOIR,S.BOUAZIZ,B.P.ROQUES . 48 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4637.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 35 72.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 4.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 47.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A L 0 0 159 0, 0.0 2,-2.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 135.7 -32.1 4.3 4.5 2 2 A E > + 0 0 151 1,-0.2 3,-1.2 2,-0.0 4,-0.3 -0.514 360.0 174.1 -76.6 71.1 -29.0 6.1 3.1 3 3 A E T 3> + 0 0 134 -2,-2.2 4,-2.2 1,-0.3 -1,-0.2 0.256 53.4 94.3 -73.1 12.9 -27.9 2.8 1.4 4 4 A M H 3> S+ 0 0 152 2,-0.2 4,-2.8 1,-0.2 -1,-0.3 0.902 87.7 47.0 -66.0 -46.1 -25.0 4.4 -0.3 5 5 A M H <4 S+ 0 0 113 -3,-1.2 -1,-0.2 2,-0.2 -2,-0.2 0.773 111.5 52.5 -66.0 -30.9 -22.8 3.3 2.6 6 6 A T H 4 S+ 0 0 63 -4,-0.3 5,-0.4 1,-0.1 3,-0.4 0.898 114.4 41.2 -72.5 -43.5 -24.3 -0.2 2.3 7 7 A A H ><>S+ 0 0 38 -4,-2.2 5,-2.5 1,-0.2 2,-1.9 0.931 109.6 58.7 -66.7 -50.1 -23.5 -0.4 -1.4 8 8 A C B 3<5S+a 13 0A 54 -4,-2.8 -1,-0.2 1,-0.2 -2,-0.1 -0.370 85.9 84.6 -84.6 57.5 -20.1 1.2 -1.1 9 9 A Q T 3 5S- 0 0 107 -2,-1.9 -1,-0.2 4,-0.6 6,-0.1 0.359 119.6 -72.3-134.3 -8.9 -18.8 -1.5 1.3 10 10 A G T < 5S+ 0 0 40 3,-2.4 -2,-0.1 -3,-0.9 -3,-0.1 -0.116 122.4 79.2 133.5 -33.9 -17.7 -4.3 -1.1 11 11 A V T 5S- 0 0 128 -5,-0.4 -3,-0.1 3,-0.1 -4,-0.1 0.892 119.4 -2.1 -73.5 -42.6 -21.2 -5.6 -2.3 12 12 A G S + 0 0 74 0, 0.0 2,-2.1 0, 0.0 3,-1.0 0.994 51.7 148.1 -64.3 -75.3 -15.5 -0.9 -2.8 15 15 A G T 3 S+ 0 0 39 1,-0.3 -6,-0.2 -6,-0.1 -7,-0.1 -0.235 87.3 19.6 73.2 -44.5 -15.7 2.4 -0.8 16 16 A H T 3> S+ 0 0 98 -2,-2.1 4,-2.3 -3,-0.2 -1,-0.3 0.534 120.1 61.6-117.7 -34.3 -13.9 0.7 2.2 17 17 A K H <> S+ 0 0 110 -3,-1.0 4,-2.2 1,-0.2 -2,-0.1 0.789 101.8 57.8 -63.0 -24.2 -12.5 -2.2 0.1 18 18 A A H > S+ 0 0 44 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.854 106.2 46.8 -69.2 -38.5 -10.8 0.8 -1.6 19 19 A R H > S+ 0 0 147 2,-0.2 4,-2.1 1,-0.2 -2,-0.2 0.848 110.3 52.4 -72.1 -35.1 -9.3 1.7 1.9 20 20 A V H X S+ 0 0 77 -4,-2.3 4,-2.0 2,-0.2 -2,-0.2 0.912 112.2 46.1 -64.9 -43.8 -8.3 -1.9 2.4 21 21 A L H >X S+ 0 0 114 -4,-2.2 4,-3.1 2,-0.2 3,-0.5 0.980 110.0 53.3 -58.9 -57.8 -6.5 -1.8 -1.0 22 22 A A H 3X S+ 0 0 48 -4,-2.7 4,-1.7 1,-0.3 -2,-0.2 0.823 110.5 48.7 -46.9 -40.2 -4.9 1.6 -0.1 23 23 A E H 3X S+ 0 0 126 -4,-2.1 4,-1.3 1,-0.2 -1,-0.3 0.907 115.9 42.8 -63.4 -46.8 -3.6 -0.0 3.1 24 24 A A H >S+ 0 0 14 -2,-2.3 4,-2.4 0, 0.0 2,-2.0 -0.209 112.1 68.7 168.7 -58.0 20.9 -2.2 -2.0 40 40 A N T <5S+ 0 0 110 -4,-2.7 -2,-0.1 1,-0.2 -3,-0.1 -0.384 114.0 33.1 -79.8 56.6 20.7 1.6 -1.3 41 41 A F T 45S+ 0 0 118 -2,-2.0 -1,-0.2 3,-0.1 -3,-0.1 -0.049 114.3 54.3-170.4 -58.8 22.4 0.8 2.1 42 42 A R T 45S+ 0 0 178 -5,-0.4 -2,-0.2 1,-0.2 -4,-0.1 0.929 120.6 34.2 -51.1 -55.4 24.7 -2.1 1.3 43 43 A N T <5S+ 0 0 90 -4,-2.4 4,-0.2 3,-0.1 -1,-0.2 0.896 114.2 77.6 -65.8 -45.8 26.3 -0.2 -1.6 44 44 A Q < + 0 0 73 -5,-0.6 -3,-0.1 1,-0.2 3,-0.1 0.146 69.9 50.8 -65.6 177.7 26.0 3.1 0.3 45 45 A R S S+ 0 0 164 1,-0.1 -1,-0.2 0, 0.0 2,-0.1 0.744 101.0 84.6 58.0 29.4 28.0 4.7 3.2 46 46 A K S S- 0 0 153 -3,-0.2 2,-0.8 0, 0.0 -1,-0.1 0.225 109.5 -30.4-116.1-126.0 31.1 3.9 1.0 47 47 A I 0 0 156 -4,-0.2 -3,-0.0 1,-0.2 -4,-0.0 -0.826 360.0 360.0-104.1 77.2 32.5 6.1 -1.7 48 48 A V 0 0 129 -2,-0.8 -1,-0.2 0, 0.0 -4,-0.1 0.447 360.0 360.0-140.8 360.0 29.1 7.6 -2.8