==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 28-JUL-04 1U5L . COMPND 2 MOLECULE: PRION PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: TRACHEMYS SCRIPTA; . AUTHOR D.A.LYSEK,L.CALZOLAI,P.GUNTERT,K.WUTHRICH . 107 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7212.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 58.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 2.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 42 39.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 119 A G 0 0 123 0, 0.0 3,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 136.6 4.1 -16.9 12.7 2 120 A S - 0 0 130 1,-0.2 0, 0.0 0, 0.0 0, 0.0 0.900 360.0 -32.8 -48.3 -56.0 4.5 -15.0 16.0 3 121 A V S S+ 0 0 132 0, 0.0 2,-0.4 0, 0.0 -1,-0.2 -0.339 92.5 126.3-174.9 67.9 3.8 -11.5 14.6 4 122 A V - 0 0 94 -3,-0.2 0, 0.0 1,-0.1 0, 0.0 -0.961 34.9-168.6-138.1 124.6 5.0 -10.8 11.0 5 123 A G S S- 0 0 43 -2,-0.4 -1,-0.1 65,-0.0 39,-0.0 0.903 80.5 -59.7 -71.9 -42.5 2.8 -9.5 8.2 6 124 A G S S+ 0 0 18 4,-0.1 4,-0.2 64,-0.0 -2,-0.1 0.372 92.1 130.5 177.4 0.6 5.5 -10.4 5.6 7 125 A L > + 0 0 69 1,-0.1 3,-2.0 2,-0.1 -3,-0.1 0.850 18.2 125.4 -34.5 -96.0 8.8 -8.5 6.4 8 126 A G T 3 S+ 0 0 80 1,-0.3 -1,-0.1 0, 0.0 3,-0.1 0.529 100.5 1.5 45.7 25.1 11.7 -11.0 6.4 9 127 A G T 3 S+ 0 0 78 1,-0.7 2,-0.3 0, 0.0 -1,-0.3 0.123 111.1 101.0 144.2 -17.1 13.7 -9.0 3.8 10 128 A Y S < S- 0 0 63 -3,-2.0 -1,-0.7 -4,-0.2 2,-0.7 -0.721 70.9-132.8 -79.2 140.9 11.5 -6.0 3.3 11 129 A A E -A 45 0A 21 34,-2.5 34,-2.5 -2,-0.3 2,-0.2 -0.889 33.0-150.6 -81.3 113.0 12.4 -2.8 5.0 12 130 A L E -A 44 0A 46 -2,-0.7 32,-0.2 32,-0.3 2,-0.1 -0.620 4.8-124.9 -87.8 158.3 8.9 -1.8 6.5 13 131 A G - 0 0 7 30,-2.1 2,-0.2 -2,-0.2 -1,-0.1 -0.310 34.4 -87.8 -80.7 174.0 7.8 1.7 7.1 14 132 A S - 0 0 82 -2,-0.1 2,-1.1 28,-0.1 29,-0.2 -0.532 49.8 -96.7 -71.1 153.9 6.5 3.1 10.4 15 133 A A - 0 0 57 -2,-0.2 27,-0.3 1,-0.2 -1,-0.1 -0.726 40.6-148.5 -73.4 97.0 2.8 2.7 11.0 16 134 A M - 0 0 34 25,-2.1 -1,-0.2 -2,-1.1 26,-0.1 0.841 36.2-107.5 -39.0 -76.5 1.9 6.2 9.8 17 135 A S S S- 0 0 95 24,-0.1 3,-0.1 -3,-0.1 -1,-0.1 -0.097 70.3 -4.0 145.8 138.1 -1.2 6.8 12.1 18 136 A G S S- 0 0 66 1,-0.1 -2,-0.0 -2,-0.1 0, 0.0 0.830 83.1-141.8 44.9 50.7 -5.0 7.1 12.1 19 137 A M + 0 0 37 1,-0.1 2,-0.3 76,-0.0 -1,-0.1 0.023 28.4 171.7 -56.1 148.3 -5.2 6.7 8.3 20 138 A R + 0 0 194 -3,-0.1 2,-0.3 71,-0.1 -1,-0.1 -0.847 11.5 176.4-143.7 172.1 -7.7 8.6 6.2 21 139 A M - 0 0 27 -2,-0.3 70,-0.0 1,-0.1 66,-0.0 -0.918 27.1-143.2-169.9 164.2 -8.5 9.3 2.5 22 140 A N - 0 0 149 -2,-0.3 7,-0.1 0, 0.0 -1,-0.1 0.743 42.2-152.9-107.6 -33.2 -11.3 11.2 0.6 23 141 A F - 0 0 30 1,-0.1 64,-0.0 5,-0.1 -2,-0.0 0.572 20.9-116.4 66.6 149.9 -11.6 8.8 -2.4 24 142 A D S S+ 0 0 148 2,-0.0 -1,-0.1 5,-0.0 0, 0.0 0.804 99.6 34.9 -90.0 -34.0 -12.7 9.3 -6.0 25 143 A R S > S- 0 0 142 1,-0.0 4,-0.7 0, 0.0 3,-0.0 -0.786 81.0-126.9-109.9 162.9 -15.8 7.1 -5.9 26 144 A P H > S+ 0 0 79 0, 0.0 4,-2.4 0, 0.0 5,-0.2 0.662 97.1 73.4 -81.7 -19.9 -18.1 6.7 -2.8 27 145 A E H > S+ 0 0 112 2,-0.2 4,-1.5 1,-0.2 5,-0.1 0.953 100.3 42.0 -64.8 -51.9 -18.0 2.9 -2.8 28 146 A E H > S+ 0 0 2 1,-0.2 4,-2.7 2,-0.2 -1,-0.2 0.832 112.6 55.7 -67.0 -31.9 -14.5 2.6 -1.4 29 147 A R H X S+ 0 0 127 -4,-0.7 4,-2.5 1,-0.2 -1,-0.2 0.934 107.4 49.0 -63.6 -44.9 -15.2 5.5 1.0 30 148 A Q H X S+ 0 0 128 -4,-2.4 4,-1.7 2,-0.2 -2,-0.2 0.819 112.7 48.9 -63.5 -30.9 -18.2 3.5 2.4 31 149 A W H X S+ 0 0 46 -4,-1.5 4,-1.8 2,-0.2 -2,-0.2 0.880 108.8 51.7 -76.8 -39.6 -15.8 0.5 2.7 32 150 A W H < S+ 0 0 20 -4,-2.7 -2,-0.2 2,-0.2 -1,-0.2 0.923 113.5 44.9 -56.9 -46.2 -13.1 2.6 4.5 33 151 A N H < S+ 0 0 106 -4,-2.5 -2,-0.2 1,-0.2 -1,-0.2 0.837 104.4 62.2 -71.9 -30.6 -15.9 3.7 6.9 34 152 A E H < S+ 0 0 129 -4,-1.7 2,-0.7 1,-0.2 -1,-0.2 0.919 85.7 171.1 -48.3 -45.1 -17.1 0.0 7.1 35 153 A N < + 0 0 66 -4,-1.8 2,-2.8 1,-0.1 -1,-0.2 -0.713 30.0 121.5 70.0-108.7 -13.6 -0.5 8.5 36 154 A S S S+ 0 0 120 -2,-0.7 -1,-0.1 1,-0.2 -4,-0.1 -0.243 97.0 21.4 32.4 -45.6 -13.2 -4.1 9.9 37 155 A N S S+ 0 0 78 -2,-2.8 -1,-0.2 1,-0.1 -2,-0.1 -0.373 75.2 136.6-134.2 48.3 -10.2 -4.8 7.6 38 156 A R - 0 0 99 1,-0.2 -2,-0.1 -6,-0.1 -1,-0.1 0.284 66.0-131.4 -68.2 6.3 -9.1 -1.3 6.7 39 157 A Y - 0 0 39 -4,-0.1 -1,-0.2 2,-0.1 2,-0.0 0.227 31.9 -56.6 61.2 171.5 -5.6 -2.9 7.3 40 158 A P - 0 0 63 0, 0.0 2,-0.3 0, 0.0 -3,-0.0 -0.258 52.7-104.9 -71.4 173.7 -2.9 -1.5 9.5 41 159 A N S S+ 0 0 33 -26,-0.0 -25,-2.1 2,-0.0 2,-0.3 -0.148 92.8 83.0 -87.5 30.3 -1.4 2.1 8.9 42 160 A Q - 0 0 52 -2,-0.3 2,-0.3 -27,-0.3 -27,-0.1 -0.841 53.5-164.0-137.1 167.1 1.7 0.6 7.4 43 161 A V - 0 0 0 -2,-0.3 -30,-2.1 -29,-0.2 2,-0.4 -0.902 22.1-122.9-143.9 169.0 3.4 -0.9 4.2 44 162 A Y E -A 12 0A 15 18,-0.3 2,-0.4 -2,-0.3 22,-0.3 -0.933 26.9-165.4-116.1 140.5 6.5 -3.0 3.4 45 163 A Y E -A 11 0A 16 -34,-2.5 -34,-2.5 -2,-0.4 2,-0.4 -0.967 19.6-134.6-129.6 143.8 9.2 -1.8 1.0 46 164 A K - 0 0 73 -2,-0.4 2,-0.5 -36,-0.2 -36,-0.1 -0.784 30.3-126.2 -78.5 138.1 12.1 -3.3 -0.9 47 165 A E - 0 0 120 -2,-0.4 2,-0.2 2,-0.0 56,-0.0 -0.795 30.9-142.4 -83.1 128.7 15.2 -1.1 -0.6 48 166 A Y - 0 0 20 -2,-0.5 5,-0.0 1,-0.1 10,-0.0 -0.514 15.7-142.6 -86.4 164.8 16.4 -0.5 -4.2 49 167 A N S S+ 0 0 128 -2,-0.2 -1,-0.1 1,-0.1 -2,-0.0 0.621 94.6 72.6 -87.9 -24.7 20.0 -0.3 -5.5 50 168 A D S S- 0 0 92 1,-0.1 2,-0.8 2,-0.0 -1,-0.1 0.750 71.2-172.9 -71.4 -25.9 19.1 2.5 -8.0 51 169 A R + 0 0 139 1,-0.1 2,-0.4 52,-0.0 -1,-0.1 0.173 62.8 81.4 42.8 2.0 18.8 5.2 -5.1 52 170 A S + 0 0 105 -2,-0.8 -1,-0.1 2,-0.0 -3,-0.0 -0.869 61.7 137.7-124.1 89.7 17.5 7.9 -7.5 53 171 A V - 0 0 11 -2,-0.4 2,-0.2 47,-0.1 51,-0.0 -0.951 40.0-137.9-127.4 155.9 13.7 7.1 -8.0 54 172 A P > - 0 0 72 0, 0.0 4,-1.3 0, 0.0 5,-0.5 -0.458 45.1 -84.3 -92.8 178.2 10.5 9.3 -8.2 55 173 A E T 4 S+ 0 0 124 -2,-0.2 45,-0.1 3,-0.1 41,-0.0 0.337 124.9 52.9 -58.6 0.7 7.0 8.7 -6.6 56 174 A G T > S+ 0 0 41 3,-0.1 4,-2.8 2,-0.1 5,-0.3 0.761 105.9 39.7-102.9 -82.1 6.3 6.5 -9.7 57 175 A R H > S+ 0 0 99 1,-0.2 4,-0.7 2,-0.2 -2,-0.1 0.781 125.4 36.2 -31.5 -60.8 8.9 3.8 -10.3 58 176 A F H >X S+ 0 0 2 -4,-1.3 4,-2.7 2,-0.2 3,-1.3 0.961 115.9 49.2 -71.3 -57.3 9.3 3.0 -6.6 59 177 A V H 3> S+ 0 0 5 -5,-0.5 4,-2.8 1,-0.3 5,-0.3 0.874 104.2 61.5 -55.4 -40.1 5.7 3.4 -5.3 60 178 A R H 3X S+ 0 0 165 -4,-2.8 4,-0.9 1,-0.2 -1,-0.3 0.795 113.8 35.4 -61.2 -30.4 4.3 1.2 -8.1 61 179 A D H S+ 0 0 18 -4,-2.8 5,-2.2 2,-0.2 -1,-0.2 0.789 109.9 54.2 -68.9 -25.9 -0.8 -6.1 -1.7 68 186 A T H ><5S+ 0 0 82 -4,-1.7 3,-1.6 -5,-0.3 -2,-0.2 0.979 113.1 39.7 -63.4 -57.9 1.2 -9.3 -2.1 69 187 A E H 3<5S+ 0 0 68 -4,-2.3 -2,-0.2 1,-0.3 -3,-0.2 0.764 116.7 50.9 -70.1 -24.9 1.8 -9.7 1.6 70 188 A Y T 3<5S- 0 0 21 -4,-2.2 -1,-0.3 -5,-0.2 -2,-0.2 0.493 108.5-131.9 -81.8 -7.9 -1.8 -8.5 2.3 71 189 A K T < 5 + 0 0 133 -3,-1.6 2,-0.5 -4,-0.2 -3,-0.2 0.960 46.8 158.8 51.9 66.7 -3.0 -11.2 -0.2 72 190 A I < + 0 0 12 -5,-2.2 -1,-0.2 16,-0.1 -2,-0.1 -0.835 10.9 124.8-123.9 93.4 -5.4 -8.9 -2.2 73 191 A D >>> - 0 0 86 -2,-0.5 4,-2.5 1,-0.1 3,-1.6 -0.900 44.0-156.6-145.5 122.7 -6.2 -10.0 -5.8 74 192 A P T 345S+ 0 0 55 0, 0.0 6,-0.1 0, 0.0 -1,-0.1 0.670 101.7 55.9 -65.5 -13.4 -9.8 -10.5 -7.2 75 193 A N T 345S+ 0 0 152 2,-0.1 -3,-0.0 -3,-0.0 0, 0.0 -0.080 121.5 24.5-107.0 21.3 -8.0 -12.9 -9.7 76 194 A E T <45S+ 0 0 135 -3,-1.6 -4,-0.0 -5,-0.1 -5,-0.0 0.251 128.7 37.9-138.7 -57.3 -6.5 -15.1 -7.1 77 195 A N T <5S- 0 0 50 -4,-2.5 -2,-0.1 1,-0.1 -5,-0.0 0.864 76.0-162.9 -68.0 -42.1 -8.5 -14.8 -3.9 78 196 A Q S - 0 0 76 -2,-0.3 4,-1.9 1,-0.0 3,-0.5 -0.872 32.0-106.1-127.4 151.5 -14.3 -6.9 -5.0 82 200 A Q H > S+ 0 0 157 -2,-0.3 4,-0.5 1,-0.2 -54,-0.1 0.463 116.2 65.6 -68.6 0.6 -13.1 -3.9 -7.0 83 201 A V H >> S+ 0 0 33 2,-0.1 4,-1.7 3,-0.1 3,-0.6 0.925 107.1 38.5 -71.1 -58.8 -14.4 -1.6 -4.2 84 202 A E H 3> S+ 0 0 29 -3,-0.5 4,-2.6 1,-0.3 -2,-0.2 0.856 112.2 58.2 -65.9 -30.3 -11.7 -3.0 -1.7 85 203 A V H 3X S+ 0 0 31 -4,-1.9 4,-0.6 1,-0.2 -1,-0.3 0.911 106.9 49.4 -58.8 -41.6 -9.0 -3.2 -4.4 86 204 A R H S+ 0 0 0 -5,-0.4 4,-2.1 2,-0.2 5,-0.2 0.942 110.7 51.1 -73.5 -42.3 -1.3 1.9 -0.1 93 211 A Q H X S+ 0 0 42 -4,-3.3 4,-2.0 2,-0.2 -2,-0.2 0.925 114.2 45.5 -54.6 -47.1 0.0 4.3 -2.8 94 212 A E H >X S+ 0 0 87 -4,-2.0 4,-2.2 -5,-0.3 3,-0.5 0.976 116.5 43.0 -62.8 -50.7 -0.5 7.2 -0.3 95 213 A M H 3X S+ 0 0 5 -4,-3.1 4,-1.1 1,-0.2 -1,-0.2 0.728 118.2 48.0 -66.4 -17.1 1.1 5.3 2.6 96 214 A C H 3X S+ 0 0 0 -4,-2.1 4,-1.8 -5,-0.2 -1,-0.2 0.696 107.0 56.1 -89.6 -27.6 3.9 4.1 0.1 97 215 A M H X S+ 0 0 124 -4,-2.2 4,-0.8 1,-0.2 3,-0.8 0.974 117.2 42.7 -63.8 -52.7 5.1 9.0 2.3 99 217 A Q H 3X S+ 0 0 6 -4,-1.1 4,-1.0 1,-0.2 -2,-0.2 0.783 102.5 68.8 -69.3 -24.7 7.5 6.0 3.0 100 218 A Y H >X S+ 0 0 29 -4,-1.8 4,-0.9 1,-0.2 3,-0.8 0.903 95.8 56.0 -54.9 -41.3 9.1 6.4 -0.5 101 219 A Q H XX S+ 0 0 106 -4,-1.0 3,-0.9 -3,-0.8 4,-0.6 0.908 100.1 59.0 -60.5 -37.1 10.5 9.7 0.7 102 220 A Q H >X S+ 0 0 74 -4,-0.8 4,-3.2 1,-0.3 3,-0.9 0.797 94.6 64.3 -63.4 -28.2 12.1 7.7 3.6 103 221 A Y H