==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL PROTEIN 28-JUL-04 1U5M . COMPND 2 MOLECULE: ALPHA 1 TYPE II COLLAGEN ISOFORM 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR J.M.O'LEARY,J.M.HAMILTON,C.M.DEANE,N.V.VALEYEV,L.J.SANDELL, . 73 1 5 5 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6527.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 32 43.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 17.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 16 21.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A Y 0 0 266 0, 0.0 2,-2.0 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 -57.4 -9.1 19.3 11.2 2 2 A V - 0 0 128 1,-0.2 0, 0.0 0, 0.0 0, 0.0 -0.452 360.0 -65.9 -83.7 64.3 -11.5 17.0 9.5 3 3 A E S S- 0 0 157 -2,-2.0 2,-0.3 1,-0.1 -1,-0.2 0.959 73.5-166.0 49.9 86.9 -8.9 15.7 7.1 4 4 A F - 0 0 164 -3,-0.1 2,-0.4 2,-0.0 -1,-0.1 -0.702 13.2-131.4-103.4 155.6 -8.1 18.8 5.0 5 5 A Q + 0 0 95 -2,-0.3 2,-0.3 32,-0.0 3,-0.1 -0.890 29.6 164.2-109.7 136.8 -6.3 19.1 1.7 6 6 A E - 0 0 158 1,-0.5 -2,-0.0 -2,-0.4 0, 0.0 -0.959 49.9 -6.7-153.9 131.8 -3.5 21.6 1.1 7 7 A A - 0 0 81 -2,-0.3 -1,-0.5 1,-0.1 0, 0.0 0.442 59.8-126.2 60.9 150.0 -0.8 21.9 -1.6 8 8 A G S S+ 0 0 32 -3,-0.1 9,-0.1 2,-0.1 -1,-0.1 0.882 80.3 89.2 -92.9 -51.5 -0.3 19.1 -4.1 9 9 A S - 0 0 68 1,-0.1 2,-0.4 7,-0.1 9,-0.2 -0.080 69.4-141.5 -47.6 147.2 3.4 18.4 -3.7 10 10 A a E -A 17 0A 7 7,-1.8 7,-1.9 27,-0.1 2,-0.7 -0.960 2.1-139.6-120.1 135.0 4.2 15.7 -1.1 11 11 A V E +A 16 0A 106 -2,-0.4 2,-0.6 5,-0.2 5,-0.2 -0.844 24.2 175.4 -97.2 111.8 7.2 15.9 1.2 12 12 A Q S S- 0 0 63 3,-1.9 3,-0.3 -2,-0.7 -2,-0.0 -0.881 77.8 -32.3-121.0 97.9 8.8 12.5 1.6 13 13 A D S S- 0 0 153 -2,-0.6 3,-0.1 1,-0.2 -1,-0.1 0.563 128.1 -47.3 70.4 7.6 11.9 12.6 3.7 14 14 A G S S+ 0 0 57 1,-0.3 2,-0.5 0, 0.0 -1,-0.2 0.625 110.4 128.6 104.5 21.9 12.4 16.0 2.2 15 15 A Q - 0 0 93 -3,-0.3 -3,-1.9 2,-0.0 2,-0.8 -0.950 53.9-138.6-114.8 123.5 11.7 15.1 -1.3 16 16 A R E +A 11 0A 207 -2,-0.5 2,-0.3 -5,-0.2 -5,-0.2 -0.709 33.3 172.4 -83.1 111.0 9.2 17.0 -3.4 17 17 A Y E -A 10 0A 68 -7,-1.9 -7,-1.8 -2,-0.8 2,-0.1 -0.805 31.7-105.7-118.6 160.2 7.2 14.5 -5.5 18 18 A N - 0 0 64 -2,-0.3 15,-0.4 -9,-0.2 -1,-0.1 -0.319 24.2-123.3 -78.4 164.8 4.1 14.8 -7.7 19 19 A D S S+ 0 0 62 1,-0.2 14,-0.5 13,-0.1 -1,-0.1 0.970 114.5 43.2 -71.7 -57.2 0.7 13.6 -6.7 20 20 A K S S+ 0 0 179 12,-0.1 -1,-0.2 14,-0.1 14,-0.1 0.734 99.4 102.3 -60.3 -21.9 0.1 11.2 -9.6 21 21 A D - 0 0 79 12,-0.2 12,-1.2 11,-0.1 2,-0.4 -0.261 62.7-152.7 -62.7 150.6 3.7 10.2 -8.9 22 22 A V E -B 32 0B 99 10,-0.2 2,-0.4 11,-0.0 10,-0.2 -0.997 12.2-175.7-132.5 133.5 4.3 7.0 -7.1 23 23 A W E -B 31 0B 23 8,-1.5 8,-1.7 -2,-0.4 -6,-0.0 -0.974 18.7-143.3-129.7 142.7 7.2 6.0 -4.9 24 24 A K + 0 0 131 -2,-0.4 6,-0.1 6,-0.2 8,-0.1 -0.879 22.7 169.8-110.0 100.1 7.9 2.7 -3.3 25 25 A P S S+ 0 0 63 0, 0.0 -1,-0.2 0, 0.0 5,-0.1 0.847 73.5 28.2 -75.0 -36.4 9.5 3.2 0.1 26 26 A E - 0 0 107 3,-1.7 5,-0.1 1,-0.1 3,-0.0 -0.966 69.0-136.9-129.5 144.8 9.2 -0.4 1.1 27 27 A P S S+ 0 0 89 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 0.470 114.2 41.5 -74.9 -1.6 9.1 -3.6 -1.0 28 28 A b S S+ 0 0 47 1,-0.3 15,-1.7 34,-0.0 2,-0.4 0.529 121.1 42.3-115.9 -19.2 6.2 -4.7 1.3 29 29 A R E - C 0 42B 129 13,-0.2 -3,-1.7 14,-0.0 2,-0.3 -0.999 68.5-156.7-135.3 133.5 4.5 -1.4 1.4 30 30 A I E - C 0 41B 64 11,-1.9 11,-1.6 -2,-0.4 2,-0.3 -0.792 6.3-160.1-108.4 151.4 3.8 1.1 -1.4 31 31 A c E +BC 23 40B 8 -8,-1.7 -8,-1.5 -2,-0.3 2,-0.3 -0.960 10.4 175.9-131.2 148.1 3.2 4.8 -1.0 32 32 A V E -BC 22 39B 26 7,-1.2 7,-3.2 -2,-0.3 2,-1.4 -0.987 34.6-130.0-153.0 143.1 1.6 7.3 -3.4 33 33 A a E > + C 0 38B 0 -12,-1.2 3,-1.3 -14,-0.5 2,-0.4 -0.525 41.5 174.6 -92.6 65.8 0.7 11.0 -3.3 34 34 A D E > S- C 0 37B 96 -2,-1.4 3,-1.7 3,-1.1 -14,-0.1 -0.631 71.9 -2.0 -78.1 125.2 -2.9 10.4 -4.5 35 35 A T T 3 S- 0 0 101 -2,-0.4 -1,-0.3 1,-0.3 3,-0.1 0.783 133.0 -60.7 65.2 28.1 -4.9 13.7 -4.4 36 36 A G T < S+ 0 0 15 -3,-1.3 2,-0.4 1,-0.3 -1,-0.3 0.457 118.8 114.1 77.8 1.3 -1.8 15.4 -2.9 37 37 A T E < S-C 34 0B 45 -3,-1.7 2,-1.4 -27,-0.1 -3,-1.1 -0.890 72.9-125.6-109.4 136.3 -2.1 12.9 -0.0 38 38 A V E -C 33 0B 54 -2,-0.4 2,-0.6 -5,-0.3 -5,-0.3 -0.658 33.9-175.3 -81.3 93.7 0.5 10.3 0.7 39 39 A L E -C 32 0B 104 -7,-3.2 -7,-1.2 -2,-1.4 2,-0.5 -0.838 5.4-164.8 -96.3 118.4 -1.7 7.2 0.8 40 40 A c E -C 31 0B 52 -2,-0.6 2,-0.3 -9,-0.2 -9,-0.2 -0.901 9.5-179.6-106.2 128.0 0.2 4.1 1.8 41 41 A D E -C 30 0B 97 -11,-1.6 -11,-1.9 -2,-0.5 -2,-0.0 -0.950 32.1-100.7-128.0 147.6 -1.4 0.7 1.2 42 42 A D E -C 29 0B 76 -2,-0.3 2,-1.1 -13,-0.2 -13,-0.2 -0.168 42.2-103.0 -60.6 157.8 -0.2 -2.8 1.9 43 43 A I - 0 0 33 -15,-1.7 2,-0.8 18,-0.2 -1,-0.1 -0.754 38.9-168.8 -89.6 98.9 1.3 -4.8 -0.9 44 44 A I - 0 0 117 -2,-1.1 18,-0.1 18,-0.2 2,-0.1 -0.811 7.1-167.5 -93.2 110.3 -1.4 -7.2 -1.9 45 45 A d - 0 0 47 -2,-0.8 17,-0.0 1,-0.2 0, 0.0 -0.387 37.1 -66.9 -89.9 171.2 -0.0 -9.8 -4.3 46 46 A E S S+ 0 0 191 -2,-0.1 2,-0.3 1,-0.1 -1,-0.2 -0.060 71.3 128.7 -53.7 159.0 -2.0 -12.3 -6.4 47 47 A D - 0 0 70 19,-0.2 -1,-0.1 -3,-0.1 2,-0.0 -0.941 53.9 -51.8 177.9-161.6 -4.0 -15.0 -4.6 48 48 A V - 0 0 60 17,-0.8 19,-0.1 -2,-0.3 17,-0.1 -0.100 35.6-139.4 -86.7-170.9 -7.4 -16.6 -4.3 49 49 A K S S+ 0 0 191 2,-0.0 -1,-0.1 -2,-0.0 3,-0.0 0.684 90.9 34.7-114.1 -78.1 -10.7 -14.9 -3.7 50 50 A D S S+ 0 0 162 1,-0.0 -2,-0.0 22,-0.0 0, 0.0 0.942 83.6 133.8 -44.0 -66.1 -13.0 -16.8 -1.3 51 51 A e - 0 0 49 1,-0.1 -1,-0.0 21,-0.0 -2,-0.0 -0.011 61.6-114.3 44.2-153.2 -10.1 -18.0 0.8 52 52 A L S S- 0 0 170 1,-0.3 -1,-0.1 -3,-0.0 13,-0.0 0.427 73.0 -8.1-137.1 -71.1 -10.7 -17.5 4.5 53 53 A S - 0 0 70 2,-0.0 2,-0.3 11,-0.0 -1,-0.3 -0.992 67.7-107.0-141.8 146.6 -8.4 -15.0 6.2 54 54 A P + 0 0 82 0, 0.0 2,-0.3 0, 0.0 10,-0.2 -0.542 42.9 168.6 -75.0 133.6 -5.3 -13.0 5.2 55 55 A E - 0 0 149 -2,-0.3 9,-0.5 7,-0.2 -2,-0.0 -0.985 31.2-133.1-149.6 135.4 -2.0 -14.2 6.6 56 56 A I - 0 0 72 -2,-0.3 2,-0.7 7,-0.3 9,-0.1 -0.803 24.7-131.1 -92.8 121.3 1.6 -13.5 5.9 57 57 A P - 0 0 54 0, 0.0 2,-1.0 0, 0.0 5,-0.1 -0.612 63.7 -57.8 -75.1 112.6 3.8 -16.6 5.6 58 58 A F S S- 0 0 205 -2,-0.7 2,-0.3 1,-0.1 -2,-0.1 -0.352 119.8 -15.5 56.3 -95.8 6.9 -16.0 7.8 59 59 A G S S+ 0 0 46 -2,-1.0 -1,-0.1 3,-0.0 2,-0.1 -0.826 89.2 125.0-145.6 101.3 8.2 -12.8 6.2 60 60 A E - 0 0 103 -2,-0.3 -4,-0.1 -32,-0.0 -2,-0.0 -0.298 63.4-106.0-128.6-147.7 6.9 -11.7 2.8 61 61 A b S S+ 0 0 31 -2,-0.1 -18,-0.2 1,-0.1 -5,-0.0 0.082 96.5 76.4-138.2 17.3 5.3 -8.7 1.2 62 62 A d - 0 0 29 -18,-0.1 2,-2.7 2,-0.1 -7,-0.2 -0.785 57.4-169.0-136.1 89.0 1.8 -10.0 0.8 63 63 A P + 0 0 52 0, 0.0 -7,-0.3 0, 0.0 2,-0.3 -0.299 62.0 87.3 -74.9 56.4 -0.1 -10.0 4.2 64 64 A I S S- 0 0 18 -2,-2.7 -2,-0.1 -9,-0.5 -3,-0.0 -0.829 88.6 -85.3-142.9 178.9 -2.8 -12.1 2.6 65 65 A e - 0 0 19 -2,-0.3 -17,-0.8 -9,-0.1 -9,-0.1 -0.849 44.0-145.0 -97.1 117.7 -3.8 -15.7 1.9 66 66 A P - 0 0 48 0, 0.0 2,-1.0 0, 0.0 -19,-0.2 -0.216 20.4-108.2 -74.9 168.8 -2.3 -17.0 -1.3 67 67 A A S S+ 0 0 53 1,-0.2 3,-0.1 -21,-0.1 4,-0.1 -0.795 99.6 56.1-103.2 90.3 -4.0 -19.5 -3.6 68 68 A D S S+ 0 0 150 -2,-1.0 2,-0.5 1,-0.4 3,-0.4 0.066 85.5 72.0-174.9 -50.9 -2.1 -22.7 -3.2 69 69 A L S S- 0 0 114 1,-0.3 -1,-0.4 -3,-0.1 0, 0.0 -0.771 113.0 -0.2 -90.5 125.4 -2.1 -23.7 0.5 70 70 A A S S- 0 0 99 -2,-0.5 2,-0.3 1,-0.2 -1,-0.3 0.998 86.1-179.4 60.5 75.0 -5.4 -25.0 1.7 71 71 A A - 0 0 82 -3,-0.4 2,-0.2 -4,-0.1 -1,-0.2 -0.792 20.2-130.0-107.7 150.5 -7.5 -24.6 -1.4 72 72 A A 0 0 96 -2,-0.3 -21,-0.0 1,-0.2 -22,-0.0 -0.552 360.0 360.0 -95.3 162.4 -11.2 -25.4 -1.8 73 73 A A 0 0 152 -2,-0.2 -1,-0.2 0, 0.0 0, 0.0 -0.200 360.0 360.0 -57.2 360.0 -12.8 -27.6 -4.5