==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 29-JUL-04 1U6F . COMPND 2 MOLECULE: RNA-BINDING PROTEIN UBP1; . SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; . AUTHOR L.VOLPON,I.D'ORSO,A.FRASCH,K.GEHRING . 139 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 12427.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 78 56.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 16.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 2 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 22 15.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 18 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 232 0, 0.0 3,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 89.0 21.9 27.4 -45.8 2 2 A S - 0 0 103 1,-0.3 2,-0.3 0, 0.0 0, 0.0 0.929 360.0 -26.9 -60.0 -47.5 24.5 24.7 -45.6 3 3 A Q - 0 0 126 0, 0.0 -1,-0.3 0, 0.0 3,-0.1 -0.858 53.4-131.7-172.2 134.6 26.6 26.3 -48.4 4 4 A I - 0 0 112 -2,-0.3 5,-0.1 -3,-0.2 6,-0.1 -0.799 15.1-173.3 -95.7 102.6 25.9 28.4 -51.5 5 5 A P - 0 0 71 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.613 38.3-127.9 -68.4 -11.1 27.7 26.9 -54.5 6 6 A L S S+ 0 0 154 2,-0.3 3,-0.1 3,-0.1 -2,-0.1 0.862 93.1 73.2 65.4 36.4 26.8 30.0 -56.5 7 7 A V S S+ 0 0 127 1,-0.6 2,-0.2 2,-0.1 -1,-0.1 0.473 99.9 4.6-141.8 -47.1 25.2 27.8 -59.2 8 8 A S - 0 0 71 1,-0.2 -1,-0.6 0, 0.0 -2,-0.3 -0.753 62.0-118.0-136.2-177.3 21.9 26.3 -58.0 9 9 A Q S S- 0 0 164 -2,-0.2 -1,-0.2 -3,-0.1 2,-0.1 0.923 81.7 -38.2 -89.0 -75.4 19.5 26.4 -55.1 10 10 A Y + 0 0 125 1,-0.1 -6,-0.0 -6,-0.1 -1,-0.0 -0.533 58.5 165.1-159.9 84.2 19.3 22.9 -53.6 11 11 A D + 0 0 134 -2,-0.1 2,-0.1 2,-0.0 -1,-0.1 0.986 67.0 61.2 -65.4 -60.7 19.4 19.9 -55.9 12 12 A P S S- 0 0 97 0, 0.0 2,-0.6 0, 0.0 0, 0.0 -0.449 75.1-146.9 -71.9 139.9 20.1 17.2 -53.3 13 13 A Y + 0 0 202 -2,-0.1 2,-0.5 2,-0.0 -2,-0.0 -0.930 20.7 174.8-113.3 114.9 17.6 16.7 -50.5 14 14 A G + 0 0 66 -2,-0.6 2,-0.4 3,-0.1 3,-0.0 -0.974 11.0 177.4-124.6 128.0 18.9 15.6 -47.1 15 15 A Q + 0 0 184 -2,-0.5 3,-0.1 1,-0.1 -2,-0.0 -0.792 56.3 75.7-130.1 89.8 16.9 15.3 -43.9 16 16 A T S S+ 0 0 139 -2,-0.4 2,-0.5 1,-0.3 -1,-0.1 0.318 80.0 60.1-156.7 -46.1 18.9 14.0 -41.0 17 17 A A + 0 0 89 2,-0.0 2,-0.4 -3,-0.0 -1,-0.3 -0.874 54.4 165.5-103.3 124.3 21.1 16.8 -39.6 18 18 A Q - 0 0 75 -2,-0.5 2,-0.7 -3,-0.1 -3,-0.0 -0.904 10.9-176.4-142.2 110.1 19.5 19.9 -38.2 19 19 A L + 0 0 169 -2,-0.4 -2,-0.0 1,-0.1 0, 0.0 -0.903 57.8 62.5-111.1 108.0 21.3 22.5 -36.1 20 20 A Q S S- 0 0 165 -2,-0.7 -1,-0.1 0, 0.0 -2,-0.0 -0.177 114.7 -6.9-177.7 -76.4 19.1 25.3 -34.8 21 21 A Q S S- 0 0 158 2,-0.0 -2,-0.1 0, 0.0 3,-0.0 0.711 78.8-177.5-111.8 -37.4 16.1 24.6 -32.6 22 22 A L + 0 0 102 1,-0.0 3,-0.1 -4,-0.0 -3,-0.1 0.018 37.5 98.6 61.3-175.4 16.1 20.8 -32.6 23 23 A Q S S- 0 0 94 1,-0.1 2,-0.4 3,-0.0 -1,-0.0 0.906 76.7-112.2 61.8 102.1 13.4 18.8 -30.7 24 24 A Q S S- 0 0 148 2,-0.0 -1,-0.1 -3,-0.0 0, 0.0 -0.496 75.8 -30.6 -67.4 119.4 10.6 17.6 -33.1 25 25 A Q S S- 0 0 148 -2,-0.4 2,-0.1 -3,-0.1 3,-0.0 0.072 92.1 -65.6 60.3-178.8 7.4 19.5 -32.2 26 26 A Q > - 0 0 117 1,-0.1 3,-0.8 0, 0.0 2,-0.6 -0.425 56.8 -83.7 -98.0 175.3 6.6 20.6 -28.6 27 27 A Q T 3 S- 0 0 86 1,-0.3 -1,-0.1 -2,-0.1 -2,-0.1 -0.718 108.2 -15.4 -84.9 117.0 5.9 18.6 -25.5 28 28 A Q T 3 S- 0 0 80 -2,-0.6 -1,-0.3 2,-0.1 -3,-0.0 0.836 115.5 -88.0 60.2 33.5 2.3 17.5 -25.3 29 29 A H < - 0 0 155 -3,-0.8 -2,-0.1 1,-0.2 0, 0.0 -0.047 53.7 -74.9 60.5-168.7 1.5 20.0 -28.0 30 30 A I + 0 0 121 -4,-0.1 -1,-0.2 2,-0.0 -2,-0.1 -0.567 60.5 173.1-126.4 68.2 0.6 23.6 -27.1 31 31 A P - 0 0 55 0, 0.0 2,-3.4 0, 0.0 -2,-0.0 -0.172 53.9 -79.9 -70.5 167.4 -3.0 23.6 -25.7 32 32 A P S S- 0 0 90 0, 0.0 2,-3.1 0, 0.0 -2,-0.0 -0.273 73.6 -90.4 -67.5 61.4 -4.7 26.7 -24.2 33 33 A T S S+ 0 0 124 -2,-3.4 2,-0.4 1,-0.1 0, 0.0 -0.345 113.5 15.6 66.2 -70.7 -2.9 26.2 -20.9 34 34 A Q + 0 0 144 -2,-3.1 4,-0.1 1,-0.1 -1,-0.1 -0.870 67.2 139.9-139.5 103.6 -5.6 23.9 -19.4 35 35 A M S S- 0 0 133 -2,-0.4 -1,-0.1 2,-0.1 3,-0.1 0.675 85.3 -58.1-111.0 -30.7 -8.2 22.4 -21.8 36 36 A N S S+ 0 0 133 1,-0.0 2,-2.0 0, 0.0 -2,-0.0 -0.025 115.5 79.6-177.2 -61.7 -8.6 18.9 -20.2 37 37 A P - 0 0 71 0, 0.0 -2,-0.1 0, 0.0 83,-0.0 -0.471 65.0-174.7 -71.8 81.3 -5.3 16.9 -20.1 38 38 A E > - 0 0 89 -2,-2.0 3,-1.1 1,-0.1 -4,-0.1 -0.530 29.8-137.1 -80.0 144.8 -3.8 18.5 -17.0 39 39 A P T 3 S+ 0 0 88 0, 0.0 3,-0.4 0, 0.0 -1,-0.1 0.641 96.2 79.3 -74.3 -14.6 -0.2 17.6 -15.9 40 40 A D T > S+ 0 0 115 1,-0.3 3,-0.7 2,-0.1 2,-0.5 0.626 74.9 78.8 -68.1 -12.5 -1.4 17.5 -12.3 41 41 A V T < + 0 0 43 -3,-1.1 79,-0.6 1,-0.2 -1,-0.3 -0.216 60.0 104.6 -90.7 44.7 -2.8 14.0 -13.1 42 42 A L T 3 + 0 0 59 -2,-0.5 -1,-0.2 -3,-0.4 -2,-0.1 0.718 63.3 70.1 -93.5 -26.3 0.6 12.4 -12.8 43 43 A R S < S+ 0 0 60 -3,-0.7 48,-2.8 48,-0.1 2,-0.9 0.570 72.1 108.9 -68.2 -7.7 -0.1 10.8 -9.4 44 44 A N E -A 90 0A 37 46,-0.2 75,-1.4 -3,-0.1 2,-0.6 -0.611 52.6-174.0 -75.0 105.9 -2.5 8.4 -11.2 45 45 A L E -AB 89 118A 0 44,-1.7 44,-3.6 -2,-0.9 2,-0.7 -0.911 16.1-153.3-109.6 120.5 -0.8 5.1 -11.1 46 46 A M E -AB 88 117A 57 71,-3.2 71,-3.1 -2,-0.6 2,-0.4 -0.794 17.9-161.2 -91.2 113.5 -2.2 2.1 -12.9 47 47 A V E +AB 87 116A 0 40,-1.2 40,-2.7 -2,-0.7 2,-0.3 -0.818 16.0 165.9-102.5 136.8 -1.1 -1.1 -11.2 48 48 A N E + B 0 115A 43 67,-2.7 67,-1.5 -2,-0.4 38,-0.1 -0.997 23.3 114.2-149.3 143.9 -1.1 -4.5 -12.8 49 49 A Y S S+ 0 0 98 1,-0.6 65,-0.1 -2,-0.3 5,-0.1 0.034 74.2 36.2-165.9 -66.3 0.4 -7.9 -12.1 50 50 A I - 0 0 42 1,-0.2 -1,-0.6 3,-0.1 4,-0.1 -0.680 60.9-146.6-104.5 159.2 -2.2 -10.6 -11.3 51 51 A P S > S+ 0 0 55 0, 0.0 3,-1.1 0, 0.0 -1,-0.2 0.902 92.0 6.1 -87.0 -85.5 -5.7 -11.1 -12.7 52 52 A T T 3 S+ 0 0 94 1,-0.2 31,-0.1 32,-0.1 32,-0.0 0.532 132.0 59.1 -78.1 -5.8 -8.1 -12.5 -10.1 53 53 A T T 3 S+ 0 0 74 2,-0.0 2,-0.6 -4,-0.0 -1,-0.2 0.370 72.0 123.3-102.5 2.7 -5.4 -12.1 -7.4 54 54 A V < - 0 0 5 -3,-1.1 2,-0.5 29,-0.1 32,-0.1 -0.537 41.6-174.2 -69.5 111.6 -5.0 -8.4 -7.9 55 55 A D > - 0 0 76 -2,-0.6 4,-2.0 1,-0.1 5,-0.2 -0.939 30.2-148.6-115.0 128.7 -5.5 -6.9 -4.4 56 56 A E H > S+ 0 0 96 -2,-0.5 4,-0.8 1,-0.2 -1,-0.1 0.750 100.6 60.3 -60.4 -23.5 -5.7 -3.1 -3.7 57 57 A V H > S+ 0 0 93 2,-0.2 4,-2.5 3,-0.2 5,-0.4 0.969 103.8 43.5 -70.0 -56.7 -4.2 -4.1 -0.3 58 58 A Q H > S+ 0 0 106 1,-0.3 4,-1.8 2,-0.2 -2,-0.2 0.893 122.0 42.7 -56.0 -38.6 -1.0 -5.6 -1.5 59 59 A L H X>S+ 0 0 20 -4,-2.0 4,-1.9 3,-0.2 5,-0.6 0.699 109.2 61.9 -78.4 -21.8 -0.7 -2.7 -3.9 60 60 A R H X5S+ 0 0 117 -4,-0.8 4,-2.0 -5,-0.2 9,-0.2 0.969 115.0 28.5 -68.8 -55.7 -1.8 -0.4 -1.1 61 61 A Q H X5S+ 0 0 129 -4,-2.5 4,-1.2 3,-0.2 -2,-0.2 0.895 123.8 51.5 -72.9 -41.6 1.1 -1.0 1.2 62 62 A L H X5S+ 0 0 25 -4,-1.8 4,-0.5 -5,-0.4 -3,-0.2 0.917 124.2 26.3 -61.7 -48.2 3.5 -1.8 -1.6 63 63 A F H >X5S+ 0 0 2 -4,-1.9 4,-1.1 2,-0.2 3,-0.9 0.906 117.8 56.5 -84.8 -46.6 2.8 1.3 -3.6 64 64 A E H 3<> -C 82 0A 37 5,-2.3 4,-1.5 1,-0.1 5,-0.7 -0.736 21.5-154.5 -88.3 124.8 -13.8 -6.7 -15.3 78 78 A R T 45S+ 0 0 202 -2,-0.5 -1,-0.1 1,-0.2 -2,-0.0 0.579 89.0 72.4 -71.8 -9.6 -17.1 -5.2 -16.7 79 79 A E T 45S+ 0 0 160 1,-0.1 -1,-0.2 3,-0.1 -3,-0.0 0.953 123.5 3.1 -70.5 -51.1 -17.9 -8.7 -18.1 80 80 A T T 45S- 0 0 100 -3,-0.3 -2,-0.2 2,-0.2 -1,-0.1 0.289 94.6-123.7-116.9 5.2 -18.6 -10.3 -14.8 81 81 A R T <5 + 0 0 202 -4,-1.5 2,-0.3 1,-0.2 -3,-0.2 0.839 67.7 137.8 53.9 33.9 -18.2 -7.2 -12.6 82 82 A Q E < - C 0 77A 129 -5,-0.7 -5,-2.3 1,-0.0 2,-0.5 -0.765 67.2 -87.6-110.5 157.1 -15.7 -9.2 -10.6 83 83 A S E S+ 0 0 67 -2,-0.3 2,-0.3 -7,-0.2 -7,-0.1 -0.469 81.7 99.5 -64.7 114.5 -12.3 -8.1 -9.2 84 84 A R E + 0 0 100 -2,-0.5 2,-2.0 2,-0.2 -32,-0.1 -0.890 39.2 62.7-168.5-162.4 -9.8 -8.7 -12.0 85 85 A G E S- 0 0 24 -2,-0.3 -36,-0.3 -9,-0.1 2,-0.3 -0.426 103.6 -51.1 66.7 -84.2 -7.8 -7.2 -14.8 86 86 A Y E - C 0 75A 83 -2,-2.0 -11,-2.1 -11,-1.7 -38,-0.2 -0.971 52.2-109.0-171.4 175.6 -5.6 -4.8 -12.7 87 87 A G E -AC 47 74A 0 -40,-2.7 -40,-1.2 -13,-0.3 2,-0.3 -0.507 15.9-140.5-114.3-176.0 -5.7 -2.1 -10.0 88 88 A F E -AC 46 73A 41 -15,-2.3 -15,-2.5 -42,-0.3 2,-0.4 -0.996 8.4-170.5-147.0 142.1 -5.1 1.6 -9.7 89 89 A V E -AC 45 72A 0 -44,-3.6 -44,-1.7 -2,-0.3 2,-0.8 -0.904 9.2-157.5-140.3 109.6 -3.5 3.8 -7.0 90 90 A K E -AC 44 71A 65 -19,-2.1 -20,-4.1 -2,-0.4 -19,-1.5 -0.767 18.9-143.7 -89.5 109.8 -3.7 7.6 -7.0 91 91 A F E - C 0 69A 0 -48,-2.8 -22,-0.3 -2,-0.8 -48,-0.1 -0.326 22.4-111.8 -70.3 152.6 -0.8 9.0 -5.1 92 92 A Q S S+ 0 0 100 -24,-2.8 2,-0.4 1,-0.1 -1,-0.1 0.909 99.0 18.7 -51.8 -49.2 -1.5 12.1 -3.0 93 93 A S S >> S- 0 0 72 -25,-0.2 3,-3.3 1,-0.1 4,-0.7 -0.969 74.4-123.1-129.4 144.6 0.7 14.4 -5.2 94 94 A G H >> S+ 0 0 15 -2,-0.4 4,-1.0 1,-0.3 3,-0.6 0.779 111.0 70.4 -51.7 -26.7 2.0 14.0 -8.8 95 95 A S H 3> S+ 0 0 97 1,-0.3 4,-0.6 2,-0.2 -1,-0.3 0.747 93.3 56.7 -63.2 -22.8 5.4 14.4 -7.3 96 96 A S H X> S+ 0 0 18 -3,-3.3 4,-1.7 1,-0.2 3,-0.6 0.811 94.7 65.3 -77.9 -31.0 4.9 10.9 -5.7 97 97 A A H S+ 0 0 0 -4,-1.7 4,-2.0 2,-0.2 5,-1.4 0.970 115.1 38.4 -70.3 -55.3 6.4 5.3 -8.2 101 101 A I H <5S+ 0 0 56 -4,-3.3 -1,-0.2 3,-0.2 -2,-0.2 0.771 117.2 56.0 -65.4 -26.2 7.4 5.0 -11.8 102 102 A A H <5S+ 0 0 85 -4,-1.0 -1,-0.2 -5,-0.5 -2,-0.2 0.893 130.8 5.3 -74.3 -43.9 11.1 5.4 -10.7 103 103 A G H <5S+ 0 0 22 -4,-2.1 -2,-0.2 -5,-0.1 -3,-0.2 0.128 134.6 43.7-131.2 23.9 11.2 2.5 -8.2 104 104 A L T ><5S+ 0 0 0 -4,-2.0 3,-1.9 12,-0.1 2,-0.4 0.548 79.9 97.9-136.0 -30.0 7.8 0.8 -8.5 105 105 A N T 3