==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 02-AUG-04 1U6U . COMPND 2 MOLECULE: V3 PEPTIDE; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR O.ROSEN,J.CHILL,M.SHARON,N.KESSLER,B.MESTER,S.ZOLLA-PAZNER, . 17 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2001.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 8 47.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 29.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 312 A K 0 0 233 0, 0.0 2,-0.3 0, 0.0 16,-0.2 0.000 360.0 360.0 360.0 112.4 27.1 5.4 -3.2 2 313 A S E -A 16 0A 81 14,-1.9 14,-1.7 2,-0.0 2,-0.2 -0.797 360.0-176.7-150.1 102.0 29.2 2.2 -2.9 3 314 A I E -A 15 0A 83 -2,-0.3 2,-0.3 12,-0.2 12,-0.3 -0.598 16.2-152.3 -97.4 160.3 32.1 1.9 -0.4 4 315 A R E +A 14 0A 163 10,-2.5 10,-2.6 -2,-0.2 2,-0.5 -0.683 32.4 151.4-134.0 79.8 34.5 -1.0 0.1 5 316 A I E +A 13 0A 105 -2,-0.3 2,-0.3 8,-0.2 8,-0.2 -0.945 12.9 171.5-116.0 129.2 35.8 -1.1 3.6 6 317 A Q - 0 0 92 6,-0.8 2,-0.4 -2,-0.5 -2,-0.0 -0.953 22.0-137.9-134.7 153.7 36.9 -4.3 5.4 7 318 A R + 0 0 232 -2,-0.3 5,-0.1 3,-0.1 -2,-0.0 -0.913 47.7 93.3-114.8 138.8 38.6 -5.1 8.7 8 319 A G S > S- 0 0 34 -2,-0.4 3,-1.6 3,-0.2 2,-0.8 -0.774 81.3 -47.1 156.7 159.1 41.3 -7.7 9.2 9 320 A P T 3 S+ 0 0 146 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.275 131.7 5.5 -52.0 94.7 45.1 -8.3 9.4 10 321 A G T 3 S+ 0 0 77 -2,-0.8 2,-0.4 1,-0.3 -3,-0.1 0.816 93.6 151.0 96.6 38.4 46.1 -6.5 6.2 11 322 A R < - 0 0 147 -3,-1.6 2,-0.3 -5,-0.0 -1,-0.3 -0.857 28.8-154.0-106.5 137.8 42.8 -4.9 5.2 12 323 A A - 0 0 68 -2,-0.4 -6,-0.8 -5,-0.1 2,-0.6 -0.766 14.0-126.1-109.1 154.9 42.6 -1.6 3.3 13 324 A F E +A 5 0A 146 -2,-0.3 2,-0.3 -8,-0.2 -8,-0.2 -0.887 33.4 173.7-104.5 118.1 39.7 0.9 3.2 14 325 A V E -A 4 0A 77 -10,-2.6 -10,-2.5 -2,-0.6 2,-0.3 -0.828 13.7-161.1-120.8 160.0 38.4 1.8 -0.3 15 326 A T E -A 3 0A 104 -2,-0.3 2,-0.4 -12,-0.3 -12,-0.2 -0.993 3.1-169.6-144.8 133.9 35.5 3.9 -1.5 16 327 A I E A 2 0A 102 -14,-1.7 -14,-1.9 -2,-0.3 -2,-0.0 -0.963 360.0 360.0-125.8 141.1 33.7 4.1 -4.9 17 328 A G 0 0 111 -2,-0.4 -2,-0.0 -16,-0.2 -14,-0.0 -0.984 360.0 360.0 169.2 360.0 31.1 6.6 -6.1