==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 02-AUG-04 1U6V . COMPND 2 MOLECULE: V3 PEPTIDE; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR O.ROSEN,J.CHILL,M.SHARON,N.KESSLER,B.MESTER,S.ZOLLA-PAZNER, . 17 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1965.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 6 35.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 29.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 312 A K 0 0 227 0, 0.0 2,-0.3 0, 0.0 16,-0.2 0.000 360.0 360.0 360.0 116.6 26.8 5.1 -3.4 2 313 A S E -A 16 0A 81 14,-1.9 14,-1.4 2,-0.0 2,-0.2 -0.830 360.0-169.7-149.4 105.0 28.8 1.9 -2.8 3 314 A I E -A 15 0A 93 -2,-0.3 12,-0.3 12,-0.2 2,-0.2 -0.562 11.3-158.8 -93.6 160.1 31.8 1.7 -0.5 4 315 A R E +A 14 0A 180 10,-2.0 10,-1.3 -2,-0.2 2,-0.4 -0.669 26.4 158.3-139.5 79.6 34.3 -1.1 -0.2 5 316 A I E -A 13 0A 109 8,-0.3 2,-0.3 -2,-0.2 8,-0.2 -0.900 18.7-164.4-109.9 132.7 36.0 -1.0 3.2 6 317 A Q - 0 0 116 6,-1.6 2,-0.3 -2,-0.4 5,-0.1 -0.864 3.5-153.4-115.8 149.4 37.7 -4.0 4.8 7 318 A R + 0 0 189 -2,-0.3 5,-0.1 3,-0.1 -2,-0.0 -0.873 45.9 60.6-120.7 153.7 38.8 -4.5 8.4 8 319 A G S > S- 0 0 31 -2,-0.3 3,-1.6 3,-0.2 -2,-0.1 -0.344 90.3 -33.3 116.9 161.1 41.5 -6.7 9.9 9 320 A P T 3 S+ 0 0 129 0, 0.0 3,-0.1 0, 0.0 -2,-0.0 -0.227 130.6 10.5 -52.2 130.5 45.3 -7.1 9.8 10 321 A G T 3 S+ 0 0 92 1,-0.3 2,-0.4 0, 0.0 -3,-0.1 0.766 99.0 137.7 70.1 25.6 46.6 -6.3 6.3 11 322 A R < - 0 0 128 -3,-1.6 -1,-0.3 -5,-0.1 2,-0.2 -0.871 36.2-159.3-108.2 137.8 43.2 -4.9 5.3 12 323 A A - 0 0 69 -2,-0.4 -6,-1.6 -5,-0.1 2,-0.4 -0.625 14.5-120.4-109.3 169.7 42.8 -1.7 3.2 13 324 A F E +A 5 0A 149 -8,-0.2 2,-0.3 -2,-0.2 -8,-0.3 -0.908 29.5 175.9-114.5 139.3 39.9 0.7 2.8 14 325 A V E -A 4 0A 75 -10,-1.3 -10,-2.0 -2,-0.4 2,-0.3 -0.941 10.6-163.6-138.5 159.8 38.2 1.5 -0.5 15 326 A T E -A 3 0A 103 -2,-0.3 2,-0.3 -12,-0.3 -12,-0.2 -0.996 5.5-175.9-147.7 140.0 35.2 3.6 -1.8 16 327 A I E A 2 0A 98 -14,-1.4 -14,-1.9 -2,-0.3 -2,-0.0 -0.926 360.0 360.0-134.2 158.4 33.2 3.7 -5.0 17 328 A G 0 0 96 -2,-0.3 -2,-0.0 -16,-0.2 0, 0.0 -0.553 360.0 360.0 127.3 360.0 30.3 5.8 -6.4