==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 03-AUG-04 1U78 . COMPND 2 MOLECULE: 26-MER; . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.WATKINS,G.VAN POUDEROYEN,T.K.SIXMA . 103 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8389.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 61.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 47 45.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A P 0 0 140 0, 0.0 4,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 175.0 57.2 44.0 98.7 2 3 A R + 0 0 263 2,-0.1 2,-0.3 0, 0.0 0, 0.0 0.780 360.0 28.2 -67.4 -27.9 56.2 46.3 101.5 3 4 A G S S- 0 0 41 1,-0.1 3,-0.1 3,-0.0 30,-0.0 -0.849 95.9 -86.8-126.8 166.3 54.6 43.4 103.3 4 5 A S - 0 0 84 -2,-0.3 2,-0.2 1,-0.1 -1,-0.1 -0.203 54.9 -90.0 -62.0 160.7 55.0 39.6 103.5 5 6 A A - 0 0 75 1,-0.1 -1,-0.1 -4,-0.1 2,-0.1 -0.506 49.9 -94.0 -75.0 139.1 53.3 37.4 101.0 6 7 A L - 0 0 1 -2,-0.2 -1,-0.1 -3,-0.1 2,-0.1 -0.352 48.8-138.1 -43.2 123.2 49.8 36.2 101.9 7 8 A S > - 0 0 46 -2,-0.1 4,-2.6 -3,-0.1 5,-0.2 -0.252 25.0 -94.2 -78.3 173.9 50.3 32.8 103.5 8 9 A D H > S+ 0 0 117 2,-0.2 4,-3.1 1,-0.2 5,-0.2 0.918 124.1 46.3 -52.8 -52.1 48.2 29.6 103.1 9 10 A T H > S+ 0 0 97 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.954 112.7 48.5 -64.9 -46.8 46.0 30.4 106.0 10 11 A E H > S+ 0 0 32 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.916 112.8 49.6 -64.9 -30.7 45.4 33.9 105.1 11 12 A R H X S+ 0 0 56 -4,-2.6 4,-3.4 1,-0.2 -2,-0.2 0.973 110.2 49.9 -67.3 -46.4 44.6 32.8 101.5 12 13 A A H X S+ 0 0 57 -4,-3.1 4,-2.1 2,-0.2 5,-0.2 0.871 110.9 50.5 -52.1 -37.7 42.2 30.1 102.8 13 14 A Q H X S+ 0 0 94 -4,-2.7 4,-2.5 -5,-0.2 5,-0.2 0.976 109.5 49.6 -69.0 -49.5 40.6 32.9 104.9 14 15 A L H X S+ 0 0 0 -4,-2.6 4,-2.5 -5,-0.2 -2,-0.2 0.914 109.1 56.5 -45.5 -48.7 40.3 35.1 101.8 15 16 A D H X S+ 0 0 67 -4,-3.4 4,-2.2 1,-0.2 -2,-0.2 0.943 110.0 39.5 -51.0 -61.2 38.8 32.2 100.0 16 17 A V H X S+ 0 0 77 -4,-2.1 4,-1.1 1,-0.2 -1,-0.2 0.838 112.7 56.0 -66.9 -31.6 35.9 31.5 102.4 17 18 A M H ><>S+ 0 0 24 -4,-2.5 5,-2.0 -5,-0.2 3,-0.8 0.948 106.2 52.2 -65.5 -42.8 35.2 35.2 102.9 18 19 A K H ><5S+ 0 0 111 -4,-2.5 3,-2.6 1,-0.3 -2,-0.2 0.951 107.4 51.1 -52.2 -54.1 34.8 35.5 99.2 19 20 A L H 3<5S+ 0 0 144 -4,-2.2 -1,-0.3 1,-0.3 -2,-0.2 0.721 109.8 52.0 -55.3 -20.8 32.3 32.6 99.2 20 21 A L T <<5S- 0 0 118 -4,-1.1 -1,-0.3 -3,-0.8 -2,-0.2 0.291 113.4-123.6 -98.3 9.1 30.5 34.5 101.9 21 22 A N T < 5 + 0 0 145 -3,-2.6 -3,-0.2 1,-0.2 2,-0.2 0.851 46.2 172.6 52.8 41.9 30.5 37.6 99.8 22 23 A V < - 0 0 38 -5,-2.0 -1,-0.2 1,-0.1 -2,-0.0 -0.554 35.4-108.6 -75.0 145.5 32.2 39.7 102.4 23 24 A S > - 0 0 66 -2,-0.2 4,-1.3 1,-0.1 -1,-0.1 -0.126 22.9-116.2 -65.3 173.3 33.2 43.2 101.2 24 25 A L H > S+ 0 0 48 2,-0.2 4,-2.9 3,-0.2 5,-0.2 0.911 114.6 52.7 -81.1 -42.9 36.9 44.0 100.5 25 26 A H H > S+ 0 0 100 1,-0.2 4,-2.0 2,-0.2 -1,-0.1 0.956 113.8 45.4 -54.7 -49.3 37.1 46.6 103.2 26 27 A E H > S+ 0 0 68 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.821 111.5 51.9 -64.2 -34.1 35.7 44.1 105.7 27 28 A M H X S+ 0 0 6 -4,-1.3 4,-1.6 2,-0.2 -1,-0.2 0.928 109.6 48.5 -69.4 -43.9 38.0 41.4 104.4 28 29 A S H X>S+ 0 0 25 -4,-2.9 5,-1.4 1,-0.2 4,-0.8 0.806 109.5 54.7 -68.8 -30.5 41.0 43.5 104.9 29 30 A R H ><5S+ 0 0 141 -4,-2.0 3,-0.6 -5,-0.2 -2,-0.2 0.966 108.2 47.5 -62.4 -52.1 39.9 44.4 108.4 30 31 A K H 3<5S+ 0 0 125 -4,-2.2 -2,-0.2 1,-0.2 -1,-0.2 0.739 123.4 32.2 -67.1 -24.9 39.5 40.8 109.5 31 32 A I H 3<5S- 0 0 17 -4,-1.6 -1,-0.2 2,-0.2 -2,-0.2 0.403 100.9-128.5-113.2 9.3 42.9 39.7 108.2 32 33 A S T <<5 + 0 0 109 -4,-0.8 2,-0.3 -3,-0.6 -3,-0.2 0.918 66.2 127.2 51.7 53.6 44.7 43.0 108.7 33 34 A R < - 0 0 42 -5,-1.4 -1,-0.2 -6,-0.1 -2,-0.2 -0.948 66.3 -93.2-140.0 148.1 46.0 43.1 105.2 34 35 A S > - 0 0 68 -2,-0.3 4,-1.7 1,-0.1 5,-0.1 -0.311 24.2-129.5 -66.7 149.6 45.7 45.8 102.5 35 36 A R H > S+ 0 0 91 1,-0.2 4,-2.8 2,-0.2 5,-0.4 0.979 108.5 62.9 -59.1 -55.5 42.8 45.7 100.1 36 37 A H H > S+ 0 0 130 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.855 106.2 46.5 -30.9 -49.8 45.2 46.1 97.2 37 38 A C H > S+ 0 0 27 1,-0.2 4,-2.1 2,-0.2 3,-0.3 0.967 114.2 43.4 -69.4 -55.0 46.7 42.8 98.2 38 39 A I H X S+ 0 0 0 -4,-1.7 4,-3.1 1,-0.2 5,-0.3 0.900 108.7 58.7 -50.1 -52.7 43.4 40.8 98.7 39 40 A R H X S+ 0 0 84 -4,-2.8 4,-2.2 1,-0.2 -1,-0.2 0.876 109.7 44.0 -47.6 -43.7 41.8 42.1 95.4 40 41 A V H X S+ 0 0 80 -4,-1.4 4,-1.1 -5,-0.4 -1,-0.2 0.906 112.0 52.2 -75.9 -40.8 44.7 40.8 93.4 41 42 A Y H >< S+ 0 0 12 -4,-2.1 3,-0.5 1,-0.2 -2,-0.2 0.958 115.2 41.2 -59.0 -49.2 44.7 37.5 95.2 42 43 A L H 3< S+ 0 0 23 -4,-3.1 -2,-0.2 1,-0.2 -1,-0.2 0.855 105.5 63.7 -69.6 -33.9 41.0 36.9 94.7 43 44 A K H 3< S- 0 0 167 -4,-2.2 -1,-0.2 -5,-0.3 -2,-0.2 0.848 132.2 -0.4 -60.5 -26.4 41.0 38.2 91.0 44 45 A D S X< S+ 0 0 89 -4,-1.1 3,-1.3 -3,-0.5 4,-0.3 -0.375 71.5 167.6-162.7 69.2 43.3 35.3 90.1 45 46 A P G > S+ 0 0 55 0, 0.0 3,-2.0 0, 0.0 -3,-0.1 0.859 72.9 65.9 -61.5 -41.8 44.2 33.0 93.1 46 47 A V G 3 S+ 0 0 138 1,-0.3 -5,-0.0 3,-0.0 -2,-0.0 0.726 107.5 43.5 -51.8 -26.9 45.7 30.1 91.1 47 48 A S G X S+ 0 0 42 -3,-1.3 3,-1.8 -6,-0.2 4,-0.3 0.342 78.2 130.6-111.4 6.8 48.5 32.4 90.0 48 49 A Y T < S+ 0 0 69 -3,-2.0 -7,-0.0 -4,-0.3 -6,-0.0 -0.411 86.0 6.0 -52.3 126.8 49.3 34.2 93.3 49 50 A G T 3 S+ 0 0 76 -2,-0.2 -1,-0.3 2,-0.1 -2,-0.0 0.695 101.6 117.2 72.1 22.6 53.0 34.0 93.9 50 51 A T < + 0 0 100 -3,-1.8 2,-0.8 1,-0.1 -2,-0.1 0.634 42.4 87.0-100.8 -16.5 53.5 32.5 90.4 51 52 A S - 0 0 100 -4,-0.3 -1,-0.1 1,-0.0 -2,-0.1 -0.772 69.9-139.4-101.2 107.8 55.5 35.1 88.5 52 53 A K - 0 0 178 -2,-0.8 2,-0.5 1,-0.1 -2,-0.1 -0.081 8.3-131.3 -64.3 158.6 59.3 34.7 89.0 53 54 A R - 0 0 186 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.970 28.1-110.1-114.6 125.2 61.8 37.6 89.4 54 55 A A - 0 0 96 -2,-0.5 0, 0.0 1,-0.1 0, 0.0 -0.312 43.4-129.5 -51.9 124.7 64.9 37.7 87.3 55 56 A P - 0 0 91 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.153 24.2 -85.2 -75.2 171.9 67.8 37.1 89.7 56 57 A R - 0 0 206 1,-0.1 2,-0.2 0, 0.0 0, 0.0 -0.209 56.9 -92.6 -67.3 169.1 71.0 39.0 90.2 57 58 A R - 0 0 204 1,-0.1 -1,-0.1 2,-0.0 0, 0.0 -0.591 36.5-108.1 -90.1 151.6 73.9 38.1 87.8 58 59 A K - 0 0 125 -2,-0.2 -1,-0.1 2,-0.1 3,-0.0 -0.066 27.5-119.5 -63.9 174.6 76.6 35.6 88.6 59 60 A A S S+ 0 0 62 1,-0.1 2,-0.4 2,-0.1 -1,-0.1 0.623 93.6 53.8 -94.5 -14.1 80.0 37.0 89.4 60 61 A L S S- 0 0 10 34,-0.1 -2,-0.1 3,-0.0 2,-0.1 -0.944 79.6-126.1-126.3 138.4 81.7 35.2 86.5 61 62 A S > - 0 0 52 -2,-0.4 4,-3.1 1,-0.1 5,-0.2 -0.435 35.4-104.6 -74.3 157.2 80.9 35.1 82.8 62 63 A V H > S+ 0 0 112 2,-0.2 4,-2.6 1,-0.2 5,-0.1 0.868 125.7 52.6 -45.4 -42.0 80.4 31.8 80.9 63 64 A R H > S+ 0 0 172 2,-0.2 4,-2.6 1,-0.2 5,-0.3 0.993 109.6 45.4 -56.7 -63.8 83.9 32.5 79.5 64 65 A D H > S+ 0 0 46 1,-0.2 4,-3.1 2,-0.2 -2,-0.2 0.898 113.3 51.0 -49.5 -49.1 85.5 33.0 82.9 65 66 A E H X S+ 0 0 30 -4,-3.1 4,-2.6 1,-0.2 -1,-0.2 0.956 111.1 48.8 -50.0 -54.2 83.7 30.0 84.3 66 67 A R H X S+ 0 0 131 -4,-2.6 4,-2.2 1,-0.2 -2,-0.2 0.846 113.2 46.5 -57.9 -39.9 85.0 27.9 81.3 67 68 A N H X S+ 0 0 41 -4,-2.6 4,-2.5 2,-0.2 -1,-0.2 0.911 109.4 54.4 -68.5 -42.8 88.6 29.2 81.8 68 69 A V H X S+ 0 0 0 -4,-3.1 4,-1.7 -5,-0.3 -2,-0.2 0.945 111.3 45.5 -55.1 -49.3 88.4 28.5 85.5 69 70 A I H X S+ 0 0 56 -4,-2.6 4,-2.8 1,-0.2 5,-0.3 0.930 110.4 53.0 -61.7 -46.1 87.4 24.9 84.8 70 71 A R H X S+ 0 0 123 -4,-2.2 4,-1.4 1,-0.2 -1,-0.2 0.888 109.7 49.5 -56.9 -40.7 90.1 24.5 82.1 71 72 A A H X S+ 0 0 20 -4,-2.5 4,-1.7 1,-0.2 -1,-0.2 0.857 117.3 39.9 -66.6 -36.1 92.8 25.6 84.6 72 73 A A H < S+ 0 0 34 -4,-1.7 -2,-0.2 -3,-0.2 -1,-0.2 0.709 109.7 59.2 -87.3 -24.5 91.6 23.3 87.3 73 74 A S H < S+ 0 0 99 -4,-2.8 -2,-0.2 -5,-0.2 -1,-0.2 0.828 114.7 38.1 -67.1 -35.6 90.9 20.4 84.9 74 75 A N H < S+ 0 0 138 -4,-1.4 2,-0.2 -5,-0.3 -2,-0.2 0.969 121.3 15.4 -80.0 -61.7 94.6 20.5 83.9 75 76 A S < - 0 0 53 -4,-1.7 2,-1.3 -5,-0.2 -1,-0.1 -0.728 68.7-111.7-122.2 160.4 96.6 21.2 87.0 76 77 A C + 0 0 132 -2,-0.2 2,-0.3 -3,-0.1 -4,-0.1 -0.716 57.9 147.9 -89.9 78.9 96.5 21.3 90.8 77 78 A K - 0 0 102 -2,-1.3 -2,-0.0 -6,-0.2 2,-0.0 -0.842 51.8-104.0-102.6 150.8 96.7 25.0 91.3 78 79 A T > - 0 0 78 -2,-0.3 4,-2.3 1,-0.1 5,-0.2 -0.292 27.2-111.4 -70.0 159.2 94.9 26.6 94.2 79 80 A A H > S+ 0 0 9 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.945 121.6 52.7 -53.4 -48.8 91.7 28.5 93.7 80 81 A R H > S+ 0 0 141 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.898 106.1 54.3 -56.3 -44.2 93.6 31.7 94.6 81 82 A D H > S+ 0 0 72 2,-0.2 4,-2.6 1,-0.2 3,-0.5 0.969 109.1 47.3 -51.8 -58.6 96.2 30.9 92.0 82 83 A I H X S+ 0 0 0 -4,-2.3 4,-2.6 1,-0.2 5,-0.2 0.916 108.7 55.2 -50.8 -50.3 93.5 30.6 89.3 83 84 A R H <>S+ 0 0 73 -4,-2.6 5,-3.0 1,-0.3 6,-0.3 0.877 114.6 39.2 -51.4 -44.3 91.9 33.8 90.4 84 85 A N H ><5S+ 0 0 85 -4,-2.1 3,-0.6 -3,-0.5 -1,-0.3 0.810 111.8 58.5 -75.3 -31.0 95.2 35.7 89.9 85 86 A E H 3<5S+ 0 0 118 -4,-2.6 -2,-0.2 1,-0.3 -1,-0.2 0.878 118.1 30.4 -68.4 -40.8 96.1 33.8 86.8 86 87 A L T 3<5S- 0 0 54 -4,-2.6 -1,-0.3 -5,-0.2 -2,-0.2 0.197 106.7-127.1 -99.9 14.6 92.9 34.9 85.0 87 88 A Q T < 5 + 0 0 179 -3,-0.6 -3,-0.2 -5,-0.2 -4,-0.1 0.881 46.8 172.4 38.5 57.9 92.9 38.2 86.9 88 89 A L < - 0 0 12 -5,-3.0 -4,-0.1 -6,-0.2 -1,-0.1 0.624 28.8-152.1 -82.8 -22.8 89.3 37.3 87.8 89 90 A S + 0 0 105 -6,-0.3 2,-0.3 1,-0.2 -1,-0.1 0.823 60.5 110.0 51.5 36.6 88.1 39.8 90.4 90 91 A A S S- 0 0 7 -7,-0.1 -1,-0.2 -30,-0.0 5,-0.1 -0.972 81.3 -81.8-132.5 147.5 85.6 37.3 91.9 91 92 A S >> - 0 0 60 -2,-0.3 4,-1.9 1,-0.1 3,-0.5 -0.079 30.5-121.1 -54.7 143.3 86.2 35.8 95.4 92 93 A K H 3> S+ 0 0 112 1,-0.2 4,-1.7 2,-0.2 -1,-0.1 0.865 116.6 55.3 -46.4 -39.6 88.5 32.9 95.9 93 94 A R H 3> S+ 0 0 157 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.888 101.8 54.8 -64.1 -42.5 85.4 31.0 97.3 94 95 A T H <> S+ 0 0 36 -3,-0.5 4,-2.4 2,-0.2 -1,-0.2 0.922 105.1 53.7 -59.0 -44.9 83.3 31.7 94.2 95 96 A I H X S+ 0 0 0 -4,-1.9 4,-2.9 1,-0.2 -1,-0.2 0.947 109.0 48.9 -53.4 -48.6 86.0 30.1 92.0 96 97 A L H X S+ 0 0 64 -4,-1.7 4,-2.5 1,-0.2 -1,-0.2 0.855 107.6 55.1 -59.9 -37.8 85.9 27.0 94.3 97 98 A N H X S+ 0 0 58 -4,-2.1 4,-1.9 2,-0.2 -1,-0.2 0.912 109.6 46.8 -60.5 -44.2 82.1 27.0 93.9 98 99 A V H X S+ 0 0 4 -4,-2.4 4,-0.9 2,-0.2 -2,-0.2 0.950 111.9 49.7 -61.8 -51.3 82.5 26.9 90.1 99 100 A I H >< S+ 0 0 50 -4,-2.9 3,-0.7 1,-0.2 -2,-0.2 0.887 113.0 47.6 -55.7 -41.7 85.1 24.2 90.3 100 101 A K H >< S+ 0 0 170 -4,-2.5 3,-1.2 1,-0.2 -1,-0.2 0.816 104.1 60.5 -69.8 -33.7 82.8 22.1 92.6 101 102 A R H 3< S+ 0 0 149 -4,-1.9 -1,-0.2 1,-0.3 -2,-0.2 0.674 94.0 66.7 -67.0 -19.3 79.7 22.7 90.3 102 103 A S T << 0 0 65 -4,-0.9 -1,-0.3 -3,-0.7 -2,-0.1 0.162 360.0 360.0 -88.0 16.5 81.6 20.9 87.5 103 104 A G < 0 0 107 -3,-1.2 -2,-0.2 0, 0.0 -3,-0.1 0.915 360.0 360.0 87.2 360.0 81.5 17.6 89.4