==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-MAR-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CHROMOSOMAL PROTEIN 02-JAN-87 1UBQ . COMPND 2 MOLECULE: UBIQUITIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.VIJAY-KUMAR,C.E.BUGG,W.J.COOK . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4930.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 69.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 6.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 21.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 15.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 54 0, 0.0 16,-2.9 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 149.6 26.3 25.4 2.8 2 2 A Q E +A 16 0A 78 14,-0.2 62,-3.2 12,-0.0 63,-0.3 -0.687 360.0 177.0 -91.0 138.3 26.9 29.0 3.9 3 3 A I E -A 15 0A 0 12,-2.1 12,-2.2 -2,-0.3 2,-0.4 -0.913 21.8-131.1-131.1 163.0 26.2 30.1 7.5 4 4 A F E -Ab 14 66A 56 61,-2.7 63,-2.7 -2,-0.3 2,-0.5 -0.947 9.1-159.9-116.0 140.2 26.8 33.4 9.2 5 5 A V E -Ab 13 67A 0 8,-2.8 8,-3.3 -2,-0.4 2,-0.5 -0.988 11.6-158.4-118.0 114.2 28.6 34.0 12.5 6 6 A K E -Ab 12 68A 105 61,-2.6 63,-2.7 -2,-0.5 6,-0.2 -0.816 8.2-158.6 -95.2 127.5 27.7 37.3 14.1 7 7 A T E > - b 0 69A 23 4,-2.8 3,-1.3 -2,-0.5 63,-0.1 -0.573 31.2-105.7 -99.6 170.8 30.2 38.6 16.7 8 8 A L T 3 S+ 0 0 136 61,-0.6 -1,-0.1 1,-0.3 62,-0.1 0.560 114.7 63.0 -73.4 -6.9 29.6 41.2 19.5 9 9 A T T 3 S- 0 0 126 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.239 119.6-102.2-101.4 14.9 31.4 43.9 17.6 10 10 A G S < S+ 0 0 66 -3,-1.3 2,-0.4 1,-0.3 -2,-0.1 0.666 81.6 129.5 77.4 16.5 29.0 44.0 14.7 11 11 A K - 0 0 98 -4,-0.1 -4,-2.8 2,-0.0 2,-0.5 -0.871 41.4-160.5 -96.3 138.1 31.2 42.0 12.3 12 12 A T E -A 6 0A 68 -2,-0.4 2,-0.4 -6,-0.2 -6,-0.2 -0.990 3.3-158.7-119.9 131.8 29.5 39.0 10.7 13 13 A I E -A 5 0A 3 -8,-3.3 -8,-2.8 -2,-0.5 2,-0.5 -0.829 7.8-142.9-109.5 142.0 31.7 36.3 9.2 14 14 A T E -A 4 0A 60 -2,-0.4 2,-0.3 -10,-0.2 -10,-0.2 -0.886 20.0-173.8-101.4 139.7 30.5 33.9 6.5 15 15 A L E -A 3 0A 6 -12,-2.2 -12,-2.1 -2,-0.5 2,-0.6 -0.919 22.3-134.9-126.4 154.0 31.7 30.3 6.6 16 16 A E E +A 2 0A 153 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.966 43.6 152.5-111.8 121.1 31.2 27.3 4.3 17 17 A V - 0 0 4 -16,-2.9 -2,-0.0 -2,-0.6 9,-0.0 -0.871 39.9-128.1-139.0 170.7 30.3 24.2 6.2 18 18 A E > - 0 0 111 -2,-0.3 3,-2.7 1,-0.0 38,-0.3 -0.943 28.8-120.6-120.0 144.5 28.5 20.9 6.0 19 19 A P T 3 S+ 0 0 45 0, 0.0 38,-2.8 0, 0.0 37,-0.4 0.737 112.8 64.1 -54.9 -24.5 25.8 19.8 8.5 20 20 A S T 3 S+ 0 0 83 36,-0.2 2,-0.2 35,-0.2 0, 0.0 0.503 80.1 107.9 -79.8 -8.1 28.1 16.8 9.2 21 21 A D S < S- 0 0 39 -3,-2.7 35,-2.0 1,-0.1 36,-0.2 -0.522 70.2-124.1 -71.0 148.4 30.8 19.1 10.6 22 22 A T B > -E 55 0B 47 33,-0.2 4,-1.8 -2,-0.2 33,-0.3 -0.442 20.0-114.3 -83.7 160.4 31.4 19.1 14.3 23 23 A I H > S+ 0 0 0 31,-2.5 4,-2.4 28,-0.5 29,-0.2 0.831 118.6 59.2 -61.3 -37.2 31.3 22.2 16.4 24 24 A E H > S+ 0 0 129 28,-2.4 4,-1.6 30,-0.3 -1,-0.2 0.898 105.6 49.4 -57.6 -40.5 35.0 21.7 17.1 25 25 A N H > S+ 0 0 55 27,-0.3 4,-2.2 -3,-0.2 -2,-0.2 0.895 108.0 52.3 -65.5 -44.4 35.6 21.9 13.3 26 26 A V H X S+ 0 0 0 -4,-1.8 4,-2.2 1,-0.2 -2,-0.2 0.929 108.3 51.5 -58.4 -46.4 33.5 25.1 13.0 27 27 A K H X S+ 0 0 15 -4,-2.4 4,-2.0 1,-0.2 -1,-0.2 0.855 108.2 52.2 -60.8 -38.0 35.6 26.7 15.7 28 28 A A H X S+ 0 0 43 -4,-1.6 4,-2.8 2,-0.2 -1,-0.2 0.874 107.7 51.5 -66.1 -38.1 38.8 25.8 13.9 29 29 A K H X S+ 0 0 71 -4,-2.2 4,-2.2 1,-0.2 -2,-0.2 0.910 110.0 49.7 -64.2 -37.3 37.5 27.4 10.7 30 30 A I H X>S+ 0 0 1 -4,-2.2 4,-2.7 2,-0.2 6,-0.6 0.898 111.1 49.1 -70.0 -39.6 36.7 30.6 12.6 31 31 A Q H X5S+ 0 0 85 -4,-2.0 4,-2.2 4,-0.2 -2,-0.2 0.953 110.3 51.7 -62.1 -48.6 40.3 30.5 14.1 32 32 A D H <5S+ 0 0 145 -4,-2.8 -2,-0.2 1,-0.2 -1,-0.2 0.911 119.4 34.8 -53.4 -41.8 41.7 30.0 10.6 33 33 A K H <5S+ 0 0 112 -4,-2.2 -2,-0.2 -5,-0.2 -1,-0.2 0.871 135.9 16.1 -93.6 -24.4 39.8 33.0 9.2 34 34 A E H <5S- 0 0 74 -4,-2.7 -3,-0.2 -5,-0.2 -2,-0.2 0.403 95.7-120.7-123.6 -6.3 39.7 35.5 12.1 35 35 A G << + 0 0 50 -4,-2.2 -4,-0.2 -5,-0.5 -3,-0.1 0.440 57.4 147.1 81.2 5.3 42.3 34.3 14.4 36 36 A I - 0 0 31 -6,-0.6 -1,-0.2 1,-0.1 -2,-0.1 -0.603 51.7-119.0 -79.7 124.9 40.2 33.7 17.5 37 37 A P >> - 0 0 46 0, 0.0 3,-1.8 0, 0.0 4,-0.6 -0.329 18.0-126.1 -57.0 137.0 41.5 30.8 19.6 38 38 A P G >4 S+ 0 0 46 0, 0.0 3,-1.1 0, 0.0 -10,-0.1 0.821 107.1 64.5 -57.2 -32.2 38.8 28.0 19.9 39 39 A D G 34 S+ 0 0 86 1,-0.3 33,-0.0 32,-0.0 -3,-0.0 0.758 101.9 50.3 -68.2 -15.6 39.1 28.1 23.7 40 40 A Q G <4 S+ 0 0 49 -3,-1.8 32,-3.0 31,-0.1 2,-0.5 0.637 92.0 100.0 -95.8 -10.5 37.7 31.6 23.7 41 41 A Q E << -C 71 0A 0 -3,-1.1 2,-0.5 -4,-0.6 30,-0.2 -0.602 43.6-179.3 -84.8 129.7 34.7 30.9 21.5 42 42 A R E -C 70 0A 93 28,-2.5 28,-3.1 -2,-0.5 2,-0.5 -0.982 16.2-158.2-121.2 116.0 31.2 30.3 22.8 43 43 A L E -C 69 0A 1 -2,-0.5 7,-2.9 7,-0.4 2,-0.4 -0.877 7.6-168.4-103.6 130.2 28.8 29.6 19.9 44 44 A I E +CD 68 49A 25 24,-2.7 24,-2.8 -2,-0.5 2,-0.4 -0.974 12.2 167.8-122.1 131.8 25.0 30.2 20.4 45 45 A F E > S- D 0 48A 36 3,-2.2 3,-2.4 -2,-0.4 22,-0.1 -0.993 74.1 -10.6-144.3 129.6 22.1 29.1 18.2 46 46 A A T 3 S- 0 0 69 -2,-0.4 3,-0.1 1,-0.3 -1,-0.1 0.858 127.8 -57.4 48.2 46.0 18.4 29.1 19.1 47 47 A G T 3 S+ 0 0 73 1,-0.2 2,-0.4 -3,-0.0 -1,-0.3 0.553 113.6 113.2 61.7 21.6 19.4 29.9 22.7 48 48 A K E < -D 45 0A 100 -3,-2.4 -3,-2.2 11,-0.1 2,-0.5 -0.917 67.5-126.8-115.1 142.7 21.6 26.8 23.1 49 49 A Q E -D 44 0A 106 -2,-0.4 2,-0.2 -5,-0.2 -5,-0.2 -0.786 34.5-123.3 -85.8 130.3 25.3 26.9 23.6 50 50 A L - 0 0 4 -7,-2.9 -7,-0.4 -2,-0.5 2,-0.4 -0.589 19.8-138.3 -79.6 138.3 26.8 24.5 21.0 51 51 A E > - 0 0 130 -2,-0.2 3,-1.4 4,-0.1 -28,-0.5 -0.799 14.2-123.9-101.8 140.0 29.0 21.7 22.3 52 52 A D T 3 S+ 0 0 66 -2,-0.4 -28,-2.4 1,-0.3 -27,-0.3 0.692 103.7 49.6 -48.2 -42.2 32.3 20.7 20.5 53 53 A G T 3 S+ 0 0 45 -30,-0.2 -1,-0.3 -31,-0.1 2,-0.2 0.515 94.4 86.3 -82.9 -8.9 31.6 17.0 19.8 54 54 A R S < S- 0 0 124 -3,-1.4 -31,-2.5 1,-0.1 -30,-0.3 -0.511 74.9-126.0 -85.4 165.5 28.1 17.4 18.3 55 55 A T B > -E 22 0B 28 -33,-0.3 4,-0.6 -2,-0.2 3,-0.4 -0.596 24.8-108.6-104.5 164.6 27.6 18.2 14.6 56 56 A L T >4>S+ 0 0 0 -35,-2.0 5,-1.4 -37,-0.4 3,-1.2 0.891 119.9 60.4 -61.2 -36.2 25.6 21.1 13.1 57 57 A S G >45S+ 0 0 66 -38,-2.8 3,-1.9 1,-0.3 -1,-0.2 0.837 92.3 66.1 -63.9 -29.6 22.9 18.6 12.0 58 58 A D G 345S+ 0 0 90 -3,-0.4 -1,-0.3 -39,-0.3 -2,-0.2 0.811 107.7 40.6 -55.6 -39.3 22.4 17.6 15.7 59 59 A Y G <<5S- 0 0 40 -3,-1.2 -1,-0.3 -4,-0.6 -2,-0.2 0.326 113.2-117.1 -91.0 4.7 21.1 21.1 16.3 60 60 A N T < 5 + 0 0 121 -3,-1.9 2,-0.7 -4,-0.2 -3,-0.2 0.922 49.3 171.5 57.9 45.4 19.1 21.4 13.0 61 61 A I < - 0 0 6 -5,-1.4 -1,-0.2 -42,-0.1 2,-0.2 -0.835 12.8-168.0 -88.7 116.4 21.2 24.3 11.7 62 62 A Q > - 0 0 122 -2,-0.7 3,-1.5 1,-0.2 -5,-0.0 -0.507 34.8 -60.9-103.4 169.5 20.1 24.8 8.0 63 63 A K T 3 S+ 0 0 133 1,-0.3 -1,-0.2 -2,-0.2 -60,-0.2 -0.131 120.4 17.5 -54.8 143.1 21.7 26.8 5.2 64 64 A E T 3 S+ 0 0 105 -62,-3.2 -1,-0.3 1,-0.2 -61,-0.2 0.523 87.0 147.2 66.9 19.1 21.9 30.6 5.9 65 65 A S < - 0 0 22 -3,-1.5 -61,-2.7 -63,-0.3 2,-0.4 -0.312 42.7-132.9 -71.1 159.5 21.4 30.3 9.6 66 66 A T E -b 4 0A 56 -63,-0.2 2,-0.3 -61,-0.1 -61,-0.2 -0.976 16.4-165.0-119.2 126.7 23.2 32.8 11.9 67 67 A L E -b 5 0A 0 -63,-2.7 -61,-2.6 -2,-0.4 2,-0.5 -0.812 18.5-130.2-103.1 154.6 25.1 31.6 15.0 68 68 A H E -bC 6 44A 83 -24,-2.8 -24,-2.7 -2,-0.3 2,-0.6 -0.903 14.8-152.5-105.6 135.7 26.2 34.1 17.6 69 69 A L E -bC 7 43A 6 -63,-2.7 -61,-0.6 -2,-0.5 2,-0.4 -0.926 13.0-178.2-107.0 115.8 29.8 34.1 18.8 70 70 A V E - C 0 42A 36 -28,-3.1 -28,-2.5 -2,-0.6 2,-0.4 -0.933 21.7-135.4-108.1 139.9 30.5 35.4 22.4 71 71 A L E - C 0 41A 77 -2,-0.4 2,-0.6 -30,-0.2 -30,-0.2 -0.799 12.2-163.9 -96.0 138.8 34.1 35.5 23.5 72 72 A R - 0 0 113 -32,-3.0 2,-0.2 -2,-0.4 -2,-0.0 -0.917 15.3-159.0-117.6 98.8 35.2 34.2 26.9 73 73 A L - 0 0 116 -2,-0.6 2,-1.0 1,-0.1 -33,-0.0 -0.503 17.6-125.7 -83.7 150.4 38.7 35.5 27.7 74 74 A R S S+ 0 0 212 -2,-0.2 -1,-0.1 1,-0.1 -34,-0.0 -0.819 81.1 28.1 -97.7 93.9 40.9 33.8 30.3 75 75 A G 0 0 75 -2,-1.0 -1,-0.1 1,-0.1 -2,-0.1 0.202 360.0 360.0 120.4 125.6 41.8 36.5 32.7 76 76 A G 0 0 152 -2,-0.0 -1,-0.1 -3,-0.0 -3,-0.0 0.127 360.0 360.0 174.2 360.0 40.4 39.8 33.9