==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-JUN-03 1UFN . COMPND 2 MOLECULE: PUTATIVE NUCLEAR PROTEIN HOMOLOG 5830484A20RIK; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR N.TOCHIO,N.KOBAYASHI,S.KOSHIBA,T.KIGAWA,M.INOUE,M.SHIROUZU, . 94 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6383.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 63.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 18.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 13.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 17.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 113 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-176.2 8.3 0.2 -21.4 2 2 A S + 0 0 145 1,-0.2 2,-0.6 2,-0.1 0, 0.0 0.920 360.0 40.8 -48.3 -51.7 11.6 2.0 -21.4 3 3 A S S S+ 0 0 120 1,-0.1 -1,-0.2 3,-0.0 3,-0.1 -0.897 78.4 100.7-106.3 121.6 9.9 5.4 -21.9 4 4 A G S S+ 0 0 75 -2,-0.6 2,-0.4 1,-0.2 -1,-0.1 0.237 77.3 18.1-156.5 -65.7 6.7 6.0 -19.9 5 5 A S - 0 0 109 9,-0.0 2,-0.4 2,-0.0 -1,-0.2 -0.989 59.1-159.5-129.6 132.6 6.8 8.2 -16.8 6 6 A S + 0 0 118 -2,-0.4 -3,-0.0 -3,-0.1 0, 0.0 -0.860 45.1 88.0-111.6 144.8 9.6 10.6 -15.8 7 7 A G - 0 0 44 -2,-0.4 4,-0.1 6,-0.0 6,-0.0 0.299 48.9-149.2 131.4 98.4 10.3 11.9 -12.3 8 8 A N S S- 0 0 168 1,-0.2 3,-0.2 2,-0.1 0, 0.0 0.971 102.4 -2.3 -50.5 -67.6 12.6 10.3 -9.7 9 9 A D S > S+ 0 0 136 1,-0.1 3,-0.7 2,-0.1 -1,-0.2 0.225 109.9 99.4-110.3 10.6 10.6 11.6 -6.7 10 10 A A G >> + 0 0 51 1,-0.2 3,-2.1 2,-0.1 4,-0.5 0.190 44.5 114.6 -82.2 18.0 8.1 13.6 -8.7 11 11 A V G >4 + 0 0 34 1,-0.3 3,-1.0 2,-0.2 5,-0.3 0.851 55.7 78.7 -56.0 -36.1 5.7 10.7 -8.2 12 12 A D G <4 S+ 0 0 69 -3,-0.7 -1,-0.3 1,-0.3 -2,-0.1 0.740 89.5 59.5 -45.3 -23.5 3.4 13.0 -6.2 13 13 A F G <4 S+ 0 0 196 -3,-2.1 -1,-0.3 -6,-0.0 -2,-0.2 0.933 92.7 73.6 -73.0 -48.2 2.4 14.2 -9.7 14 14 A S S << S- 0 0 27 -3,-1.0 -9,-0.0 -4,-0.5 0, 0.0 -0.362 87.6-124.0 -69.1 146.3 1.1 10.9 -10.9 15 15 A P S S+ 0 0 69 0, 0.0 15,-2.0 0, 0.0 16,-0.5 0.434 93.0 76.9 -69.7 2.5 -2.2 9.6 -9.6 16 16 A T E -A 29 0A 40 -5,-0.3 13,-0.2 13,-0.2 -2,-0.2 -0.922 61.3-169.9-118.9 142.6 -0.3 6.4 -8.5 17 17 A L E -A 28 0A 7 11,-2.1 11,-2.6 -2,-0.4 2,-0.4 -0.992 29.0-110.7-134.2 139.2 2.0 5.9 -5.6 18 18 A P E -A 27 0A 43 0, 0.0 2,-0.3 0, 0.0 9,-0.2 -0.520 41.1-178.9 -69.7 119.1 4.4 3.1 -4.7 19 19 A V E -A 26 0A 1 7,-1.4 7,-2.5 -2,-0.4 2,-0.4 -0.924 10.2-172.9-122.9 147.4 3.1 1.2 -1.6 20 20 A T E -AB 25 72A 51 52,-1.6 52,-3.0 -2,-0.3 2,-0.4 -0.994 5.7-174.3-142.6 133.0 4.6 -1.8 0.3 21 21 A C E > -A 24 0A 2 3,-1.9 3,-2.5 -2,-0.4 2,-0.5 -0.924 59.7 -63.8-131.3 107.9 3.1 -3.9 3.1 22 22 A G T 3 S- 0 0 71 -2,-0.4 38,-0.1 48,-0.4 37,-0.1 -0.379 123.2 -9.3 58.5-109.2 5.3 -6.6 4.7 23 23 A K T 3 S+ 0 0 173 -2,-0.5 2,-0.3 36,-0.1 -1,-0.3 0.134 122.6 90.0-105.9 17.7 6.1 -9.1 2.0 24 24 A A E < -A 21 0A 13 -3,-2.5 -3,-1.9 32,-0.1 2,-0.4 -0.850 53.1-168.3-116.1 151.9 3.6 -7.5 -0.5 25 25 A K E +A 20 0A 123 -2,-0.3 20,-1.1 -5,-0.2 -5,-0.2 -0.999 22.8 126.7-141.8 136.0 4.1 -4.8 -3.1 26 26 A G E -A 19 0A 7 -7,-2.5 -7,-1.4 -2,-0.4 2,-0.3 -0.697 46.2 -94.0-156.1-151.4 1.6 -2.7 -5.1 27 27 A T E -A 18 0A 43 16,-0.4 16,-2.5 -9,-0.2 2,-0.4 -0.961 21.4-137.3-151.9 129.8 0.5 0.7 -6.1 28 28 A L E -AC 17 42A 2 -11,-2.6 -11,-2.1 -2,-0.3 2,-0.7 -0.714 12.6-153.6 -89.6 134.1 -2.2 3.1 -4.7 29 29 A F E >> -A 16 0A 28 12,-0.5 4,-1.7 -2,-0.4 3,-1.1 -0.879 5.9-159.5-111.5 102.0 -4.4 5.0 -7.2 30 30 A Q H 3> S+ 0 0 33 -15,-2.0 4,-2.5 -2,-0.7 -1,-0.2 0.836 96.3 57.1 -44.4 -38.2 -5.7 8.2 -5.7 31 31 A E H 3> S+ 0 0 104 -16,-0.5 4,-0.5 1,-0.2 -1,-0.3 0.907 112.4 38.4 -61.9 -43.3 -8.4 8.0 -8.4 32 32 A K H <4 S+ 0 0 75 -3,-1.1 4,-0.5 1,-0.2 -1,-0.2 0.564 115.8 56.0 -83.6 -9.6 -9.6 4.6 -7.2 33 33 A L H < S+ 0 0 7 -4,-1.7 3,-0.5 2,-0.2 -2,-0.2 0.795 88.8 72.5 -90.1 -33.9 -9.0 5.7 -3.6 34 34 A K H < S+ 0 0 119 -4,-2.5 -2,-0.1 -5,-0.3 -1,-0.1 0.879 92.9 58.6 -47.6 -43.6 -11.3 8.8 -3.7 35 35 A Q S < S- 0 0 139 -4,-0.5 2,-0.3 1,-0.2 -1,-0.2 0.932 125.6 -61.2 -53.5 -50.6 -14.3 6.4 -3.8 36 36 A G > - 0 0 24 -4,-0.5 3,-0.7 -3,-0.5 -1,-0.2 -0.911 37.9 -96.8 171.5 162.2 -13.2 4.9 -0.5 37 37 A A T 3 S+ 0 0 48 -2,-0.3 16,-0.3 1,-0.2 15,-0.3 0.327 119.1 59.8 -77.7 9.4 -10.6 3.0 1.5 38 38 A S T 3 S+ 0 0 74 13,-0.1 -1,-0.2 -5,-0.1 2,-0.2 0.659 82.6 92.4-107.0 -25.9 -12.7 -0.2 0.8 39 39 A K S < S- 0 0 111 -3,-0.7 2,-0.7 -6,-0.2 13,-0.5 -0.493 94.5 -96.8 -73.4 138.3 -12.5 -0.1 -3.0 40 40 A K + 0 0 101 -2,-0.2 11,-0.3 1,-0.2 -1,-0.1 -0.377 68.4 140.4 -57.7 102.9 -9.7 -2.0 -4.7 41 41 A C + 0 0 0 9,-1.1 2,-0.8 -2,-0.7 -12,-0.5 0.601 44.7 85.0-117.7 -25.9 -7.1 0.7 -5.2 42 42 A I E -CD 28 50A 1 8,-2.2 8,-2.1 -3,-0.2 2,-0.6 -0.728 62.6-163.6 -85.9 109.5 -3.9 -1.1 -4.4 43 43 A Q E - D 0 49A 57 -16,-2.5 -16,-0.4 -2,-0.8 6,-0.2 -0.839 7.1-152.7 -98.0 118.3 -2.6 -3.0 -7.5 44 44 A N > - 0 0 36 4,-1.4 3,-2.7 -2,-0.6 -18,-0.2 -0.154 39.0 -87.7 -78.6 177.9 -0.0 -5.6 -6.8 45 45 A E T 3 S+ 0 0 157 -20,-1.1 -19,-0.1 1,-0.3 -1,-0.1 0.815 130.0 60.5 -56.2 -31.2 2.6 -6.9 -9.2 46 46 A A T 3 S- 0 0 66 2,-0.2 -1,-0.3 1,-0.1 3,-0.1 0.472 113.4-122.1 -76.0 -1.0 0.1 -9.4 -10.4 47 47 A G < + 0 0 25 -3,-2.7 2,-0.6 1,-0.3 -2,-0.1 0.212 69.3 137.5 79.9 -18.1 -2.1 -6.4 -11.4 48 48 A D - 0 0 104 -5,-0.1 -4,-1.4 1,-0.1 -1,-0.3 -0.496 53.8-131.3 -66.3 111.3 -4.8 -7.8 -9.2 49 49 A W E -D 43 0A 69 -2,-0.6 2,-0.3 -6,-0.2 -6,-0.3 -0.234 24.2-163.3 -62.3 152.0 -6.3 -4.8 -7.3 50 50 A L E -D 42 0A 16 -8,-2.1 -8,-2.2 -11,-0.1 -9,-1.1 -0.999 20.2-110.8-142.3 143.3 -6.7 -5.0 -3.6 51 51 A T > - 0 0 14 -2,-0.3 4,-2.1 -11,-0.3 5,-0.4 -0.396 42.1-100.5 -71.7 147.3 -8.7 -3.1 -1.0 52 52 A V H > S+ 0 0 1 -13,-0.5 4,-0.5 -15,-0.3 -14,-0.1 0.770 129.8 40.8 -35.2 -32.4 -6.8 -1.0 1.6 53 53 A K H >> S+ 0 0 128 -16,-0.3 4,-1.8 2,-0.2 3,-0.7 0.924 110.1 54.6 -84.4 -52.0 -7.4 -3.9 3.8 54 54 A E H 3> S+ 0 0 88 1,-0.3 4,-2.1 2,-0.2 3,-0.3 0.932 102.1 58.5 -46.5 -57.1 -6.8 -6.8 1.4 55 55 A F H 3X S+ 0 0 0 -4,-2.1 4,-1.0 1,-0.3 -1,-0.3 0.866 106.4 50.2 -41.1 -46.0 -3.3 -5.5 0.5 56 56 A L H XX>S+ 0 0 11 -3,-0.7 4,-2.5 -4,-0.5 5,-1.7 0.937 105.4 54.9 -60.8 -48.8 -2.5 -5.8 4.2 57 57 A N H 3<5S+ 0 0 89 -4,-1.8 -1,-0.2 -3,-0.3 -2,-0.2 0.861 100.4 62.0 -53.3 -38.1 -3.7 -9.4 4.4 58 58 A E H 3<5S+ 0 0 120 -4,-2.1 -1,-0.3 1,-0.2 -2,-0.2 0.878 111.1 38.0 -56.8 -39.6 -1.4 -10.3 1.6 59 59 A G H <<5S- 0 0 16 -4,-1.0 -2,-0.2 -3,-1.0 -1,-0.2 0.841 120.0-106.6 -81.3 -35.3 1.6 -9.3 3.7 60 60 A G T <5S+ 0 0 60 -4,-2.5 -3,-0.2 -5,-0.1 3,-0.2 0.680 88.4 110.9 113.5 30.0 0.2 -10.7 7.0 61 61 A R > < + 0 0 148 -5,-1.7 3,-2.6 1,-0.1 -4,-0.2 0.114 26.6 128.1-117.5 18.0 -0.8 -7.6 8.9 62 62 A A T 3 + 0 0 51 -6,-0.3 -5,-0.1 1,-0.3 -1,-0.1 0.763 69.4 67.1 -44.9 -27.0 -4.5 -8.1 8.7 63 63 A T T 3 S+ 0 0 125 -3,-0.2 -1,-0.3 -7,-0.1 2,-0.2 0.193 81.1 118.2 -81.8 18.0 -4.3 -7.6 12.5 64 64 A S < - 0 0 34 -3,-2.6 3,-0.1 1,-0.1 -3,-0.0 -0.510 53.7-158.0 -85.7 154.6 -3.3 -4.0 11.9 65 65 A K S S+ 0 0 204 1,-0.3 2,-0.5 -2,-0.2 -1,-0.1 0.815 81.7 37.4 -97.8 -41.7 -5.3 -1.0 13.0 66 66 A D >> - 0 0 43 1,-0.1 4,-1.6 2,-0.0 3,-0.6 -0.955 58.2-166.1-119.0 117.7 -4.1 1.7 10.6 67 67 A W H 3> S+ 0 0 40 -2,-0.5 4,-2.7 1,-0.2 11,-0.2 0.816 91.3 62.5 -67.8 -30.9 -3.3 0.8 7.0 68 68 A K H 34 S+ 0 0 54 1,-0.2 11,-0.8 2,-0.2 10,-0.7 0.787 105.9 46.8 -65.1 -27.4 -1.5 4.0 6.5 69 69 A G H <4 S+ 0 0 29 -3,-0.6 -2,-0.2 8,-0.1 -1,-0.2 0.910 115.5 41.4 -80.9 -45.5 1.0 2.9 9.2 70 70 A V H < S+ 0 0 21 -4,-1.6 -48,-0.4 -9,-0.1 2,-0.4 0.905 103.6 76.6 -68.5 -42.8 1.7 -0.6 7.9 71 71 A I < - 0 0 1 -4,-2.7 7,-1.4 -5,-0.2 2,-0.4 -0.567 69.4-163.1 -74.4 126.1 1.8 0.5 4.3 72 72 A R E -BE 20 77A 117 -52,-3.0 -52,-1.6 -2,-0.4 2,-0.6 -0.921 7.8-158.5-114.7 136.4 5.1 2.2 3.4 73 73 A C E > S- E 0 76A 3 3,-2.9 3,-1.7 -2,-0.4 -54,-0.2 -0.927 78.3 -23.2-117.6 109.1 5.7 4.3 0.3 74 74 A N T 3 S- 0 0 88 -2,-0.6 -1,-0.2 1,-0.3 3,-0.1 0.826 127.8 -51.0 62.9 32.0 9.3 4.8 -0.8 75 75 A G T 3 S+ 0 0 61 1,-0.2 2,-0.5 -55,-0.1 -1,-0.3 0.320 125.8 100.5 88.4 -8.8 10.4 4.0 2.7 76 76 A E E < S-E 73 0A 84 -3,-1.7 -3,-2.9 2,-0.0 -1,-0.2 -0.949 76.5-119.6-116.1 124.7 8.0 6.5 4.2 77 77 A T E >> -E 72 0A 38 -2,-0.5 4,-2.1 -5,-0.3 3,-0.7 -0.236 26.3-115.0 -58.4 145.0 4.7 5.6 5.7 78 78 A L H 3> S+ 0 0 0 -7,-1.4 4,-3.1 -10,-0.7 5,-0.2 0.900 118.2 55.4 -46.6 -48.6 1.6 7.1 4.0 79 79 A R H 3> S+ 0 0 132 -11,-0.8 4,-2.2 1,-0.2 -1,-0.3 0.886 107.0 50.9 -53.6 -42.0 0.9 9.0 7.2 80 80 A H H <> S+ 0 0 95 -3,-0.7 4,-1.4 -12,-0.2 -1,-0.2 0.946 112.6 44.1 -62.1 -50.3 4.4 10.5 7.0 81 81 A L H <>S+ 0 0 20 -4,-2.1 5,-2.7 1,-0.2 6,-0.5 0.889 111.4 55.1 -62.2 -40.6 4.0 11.6 3.4 82 82 A E H ><5S+ 0 0 71 -4,-3.1 3,-2.1 4,-0.3 -1,-0.2 0.916 103.7 54.0 -59.2 -45.4 0.5 12.9 4.0 83 83 A Q H 3<5S+ 0 0 151 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.861 105.5 53.9 -57.8 -36.9 1.8 15.2 6.9 84 84 A K T 3<5S- 0 0 128 -4,-1.4 -1,-0.3 -5,-0.1 -2,-0.2 0.263 122.6-109.4 -82.0 13.0 4.3 16.7 4.5 85 85 A G T < 5S+ 0 0 63 -3,-2.1 -3,-0.2 2,-0.2 -2,-0.2 0.844 91.1 114.9 62.6 33.9 1.4 17.5 2.1 86 86 A L < + 0 0 63 -5,-2.7 2,-0.4 1,-0.2 -4,-0.3 0.764 66.9 49.4-101.2 -36.1 2.6 14.8 -0.3 87 87 A L - 0 0 9 -6,-0.5 -1,-0.2 -9,-0.2 -2,-0.2 -0.890 58.4-162.2-110.5 137.2 -0.3 12.4 -0.1 88 88 A F - 0 0 55 -2,-0.4 4,-0.2 -3,-0.1 -1,-0.1 0.830 15.4-162.0 -82.4 -35.2 -4.0 13.4 -0.4 89 89 A S - 0 0 25 2,-0.1 -52,-0.1 3,-0.0 -2,-0.0 0.900 63.8 -47.3 52.1 44.9 -5.3 10.2 1.2 90 90 A G S S- 0 0 10 2,-0.1 2,-1.0 -54,-0.1 -56,-0.1 -0.102 99.5 -34.4 87.2 170.9 -8.7 10.9 -0.3 91 91 A P - 0 0 97 0, 0.0 2,-0.4 0, 0.0 -2,-0.1 -0.526 64.5-136.8 -69.7 98.6 -10.8 14.1 -0.4 92 92 A S - 0 0 107 -2,-1.0 -2,-0.1 1,-0.2 -3,-0.0 -0.409 20.5-172.9 -60.5 113.8 -10.1 15.7 2.9 93 93 A S 0 0 131 -2,-0.4 -1,-0.2 1,-0.0 -3,-0.0 0.919 360.0 360.0 -75.1 -46.0 -13.4 17.0 4.3 94 94 A G 0 0 114 0, 0.0 -2,-0.1 0, 0.0 -1,-0.0 0.389 360.0 360.0 152.2 360.0 -12.0 18.9 7.2