==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 10-JUN-03 1UFW . COMPND 2 MOLECULE: SYNAPTOJANIN 2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR F.HE,Y.MUTO,R.USHIKOSHI,M.SHIROUZU,T.TERADA,T.KIGAWA, . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6469.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 57.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 20.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 22 23.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 137 0, 0.0 2,-0.3 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0-169.5 -11.8 11.1 -27.2 2 2 A S + 0 0 80 1,-0.1 4,-0.2 2,-0.1 5,-0.1 -0.689 360.0 132.3-136.9 80.8 -11.6 12.9 -23.9 3 3 A S S > S+ 0 0 107 -2,-0.3 4,-3.4 3,-0.1 5,-0.1 0.905 76.4 40.1 -92.1 -58.8 -8.3 14.6 -23.4 4 4 A G H > S+ 0 0 52 2,-0.2 4,-2.3 1,-0.2 -2,-0.1 0.979 118.5 45.4 -53.8 -67.4 -9.3 18.1 -22.2 5 5 A S H 4 S+ 0 0 100 1,-0.2 -1,-0.2 2,-0.2 -2,-0.1 0.908 116.1 48.1 -41.6 -57.4 -12.1 16.9 -19.9 6 6 A S H 4 S+ 0 0 67 1,-0.2 -1,-0.2 -4,-0.2 -2,-0.2 0.950 108.1 54.7 -49.1 -60.3 -9.9 14.2 -18.5 7 7 A G H < S+ 0 0 66 -4,-3.4 2,-2.0 1,-0.3 3,-0.4 0.898 106.7 51.4 -38.3 -63.5 -7.0 16.6 -18.0 8 8 A S S < S+ 0 0 97 -4,-2.3 -1,-0.3 1,-0.2 -4,-0.0 -0.552 73.9 126.7 -81.2 77.1 -9.0 18.9 -15.9 9 9 A S + 0 0 86 -2,-2.0 -1,-0.2 -3,-0.1 -2,-0.1 0.877 32.4 177.3 -96.2 -56.8 -10.3 16.3 -13.5 10 10 A F + 0 0 206 -3,-0.4 2,-0.2 1,-0.1 -2,-0.1 0.925 23.2 136.2 45.9 94.7 -9.4 17.7 -10.1 11 11 A Q + 0 0 179 2,-0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.646 20.8 96.4-171.8 107.8 -10.9 15.2 -7.6 12 12 A G - 0 0 48 -2,-0.2 2,-0.3 59,-0.0 56,-0.1 -0.826 66.8 -88.3 171.6 150.2 -9.2 13.8 -4.5 13 13 A P > - 0 0 65 0, 0.0 3,-0.6 0, 0.0 -2,-0.0 -0.548 29.7-132.5 -75.0 132.5 -8.9 14.2 -0.7 14 14 A L T 3 S+ 0 0 173 -2,-0.3 0, 0.0 1,-0.3 0, 0.0 0.755 107.6 66.2 -53.1 -24.1 -6.2 16.7 0.4 15 15 A D T 3 S- 0 0 99 2,-0.1 50,-0.3 49,-0.0 -1,-0.3 0.967 83.6-161.5 -62.0 -55.4 -5.4 13.9 2.8 16 16 A A < + 0 0 3 -3,-0.6 49,-2.5 1,-0.2 2,-0.3 0.904 32.2 153.9 71.2 43.4 -4.3 11.5 0.0 17 17 A T E +A 64 0A 30 47,-0.3 2,-0.3 75,-0.1 47,-0.3 -0.795 20.0 179.6-106.6 148.5 -4.6 8.5 2.3 18 18 A V E -A 63 0A 4 45,-2.8 45,-3.0 -2,-0.3 2,-0.5 -0.991 25.6-123.7-147.0 149.1 -5.2 4.9 1.2 19 19 A V E -AB 62 90A 11 71,-1.4 71,-3.0 -2,-0.3 2,-0.4 -0.823 23.6-159.6 -97.9 130.7 -5.6 1.6 2.9 20 20 A V E +AB 61 89A 0 41,-2.2 41,-0.5 -2,-0.5 2,-0.3 -0.916 14.4 172.1-112.7 136.1 -3.3 -1.3 1.8 21 21 A N E - B 0 88A 59 67,-2.7 67,-3.0 -2,-0.4 2,-0.3 -0.941 29.2-115.5-139.2 159.2 -4.1 -4.9 2.5 22 22 A L E - B 0 87A 23 -2,-0.3 65,-0.2 65,-0.2 64,-0.0 -0.724 9.4-150.0 -97.4 146.7 -2.6 -8.3 1.5 23 23 A Q S S+ 0 0 110 63,-3.3 -1,-0.1 -2,-0.3 64,-0.1 0.935 95.7 12.9 -77.9 -51.0 -4.5 -10.8 -0.7 24 24 A S S S+ 0 0 78 62,-0.4 -1,-0.2 0, 0.0 2,-0.1 -0.604 85.7 174.5-128.8 70.2 -2.9 -13.9 0.8 25 25 A P - 0 0 29 0, 0.0 2,-0.1 0, 0.0 8,-0.0 -0.335 20.4-134.0 -75.1 158.3 -1.1 -12.8 3.9 26 26 A T > - 0 0 62 -2,-0.1 4,-4.4 1,-0.0 5,-0.2 -0.250 36.5 -83.3 -99.7-170.6 0.6 -15.2 6.3 27 27 A L H > S+ 0 0 147 1,-0.2 4,-1.6 2,-0.2 5,-0.2 0.901 130.4 53.5 -61.3 -42.7 0.5 -15.6 10.1 28 28 A E H > S+ 0 0 116 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.898 117.7 36.5 -58.6 -43.2 3.3 -13.0 10.3 29 29 A E H 4 S+ 0 0 13 2,-0.2 -2,-0.2 1,-0.2 -1,-0.2 0.941 110.7 58.3 -74.5 -51.1 1.1 -10.6 8.3 30 30 A K H < S+ 0 0 147 -4,-4.4 -1,-0.2 1,-0.2 -2,-0.2 0.781 113.1 44.8 -49.0 -27.9 -2.2 -11.6 9.7 31 31 A N H < S- 0 0 133 -4,-1.6 -1,-0.2 1,-0.3 2,-0.2 0.921 138.1 -31.8 -81.8 -50.3 -0.6 -10.6 13.0 32 32 A E S < S- 0 0 111 -4,-2.1 -1,-0.3 -5,-0.2 27,-0.1 -0.822 74.8 -82.8-174.3 132.1 1.0 -7.4 11.8 33 33 A F - 0 0 17 24,-0.5 -4,-0.1 27,-0.3 2,-0.1 -0.032 53.8-116.2 -39.0 132.5 2.4 -6.1 8.5 34 34 A P > - 0 0 18 0, 0.0 4,-3.0 0, 0.0 -1,-0.1 -0.363 6.4-135.1 -75.0 155.7 6.0 -7.2 8.1 35 35 A E H > S+ 0 0 143 2,-0.2 4,-1.4 1,-0.2 5,-0.4 0.841 105.3 61.1 -77.5 -36.1 8.8 -4.7 8.0 36 36 A D H 4 S+ 0 0 122 1,-0.2 4,-0.4 2,-0.2 -1,-0.2 0.756 116.9 34.3 -61.3 -24.3 10.5 -6.4 5.1 37 37 A L H > S+ 0 0 12 2,-0.1 4,-3.1 3,-0.1 -2,-0.2 0.875 111.8 59.7 -94.3 -52.7 7.3 -5.6 3.2 38 38 A R H >X S+ 0 0 62 -4,-3.0 4,-3.8 2,-0.2 3,-1.1 0.914 109.7 41.4 -38.4 -75.2 6.4 -2.3 4.8 39 39 A T H 3X S+ 0 0 75 -4,-1.4 4,-4.5 1,-0.3 5,-0.5 0.900 114.0 53.1 -39.6 -59.1 9.5 -0.5 3.8 40 40 A E H 3> S+ 0 0 46 -4,-0.4 4,-1.5 -5,-0.4 -1,-0.3 0.852 117.5 39.5 -46.5 -40.4 9.4 -2.1 0.4 41 41 A L H S+ 0 0 0 -4,-3.1 4,-2.8 -3,-1.1 5,-0.8 0.959 115.7 48.8 -74.6 -55.1 5.8 -0.8 0.1 42 42 A M H X5S+ 0 0 32 -4,-3.8 4,-0.9 1,-0.3 -2,-0.2 0.861 119.6 40.5 -51.9 -39.9 6.5 2.6 1.7 43 43 A Q H X5S+ 0 0 117 -4,-4.5 4,-1.2 -5,-0.3 -1,-0.3 0.813 122.0 43.3 -78.4 -33.0 9.5 3.0 -0.6 44 44 A T H >X5S+ 0 0 48 -4,-1.5 4,-1.0 -5,-0.5 3,-0.7 0.989 118.9 38.0 -74.3 -68.9 7.5 1.5 -3.5 45 45 A L H 3X5S+ 0 0 0 -4,-2.8 4,-1.1 1,-0.3 -3,-0.2 0.878 114.2 60.1 -49.5 -42.1 4.2 3.1 -3.2 46 46 A G H >< -C 60 0A 59 3,-1.9 3,-2.9 -2,-0.5 -24,-0.5 -0.725 37.6 -96.1-102.8 153.0 -3.0 -1.2 11.6 58 58 A Q T 3 S+ 0 0 159 1,-0.3 -25,-0.1 -2,-0.3 -1,-0.1 0.786 127.8 6.0 -30.9 -40.9 -3.1 -4.5 13.3 59 59 A G T 3 S+ 0 0 40 -27,-0.1 -1,-0.3 -26,-0.0 2,-0.3 -0.220 129.1 59.4-142.6 45.8 -4.4 -5.7 10.0 60 60 A Q E < - C 0 57A 89 -3,-2.9 -3,-1.9 -39,-0.1 -27,-0.3 -0.956 58.3-142.5-161.2 173.0 -4.2 -2.7 7.7 61 61 A M E -AC 20 56A 0 -41,-0.5 -41,-2.2 -5,-0.3 2,-1.0 -0.674 11.2-169.3-151.8 89.9 -1.9 -0.2 6.2 62 62 A L E -AC 19 55A 30 -7,-3.1 -7,-2.7 -43,-0.2 2,-0.4 -0.727 15.6-173.1 -85.1 104.0 -3.1 3.4 5.8 63 63 A V E -AC 18 54A 0 -45,-3.0 -45,-2.8 -2,-1.0 2,-0.4 -0.790 7.0-154.8-100.8 141.9 -0.5 5.1 3.6 64 64 A T E -AC 17 53A 17 -11,-3.1 -12,-1.4 -2,-0.4 -11,-1.0 -0.910 10.0-172.0-118.3 144.8 -0.6 8.9 3.0 65 65 A F - 0 0 2 -49,-2.5 -14,-0.2 -2,-0.4 3,-0.1 -0.610 32.0-118.4-122.8-177.0 0.8 10.8 0.0 66 66 A A S S+ 0 0 50 -16,-0.5 2,-0.2 -2,-0.2 -1,-0.1 0.890 96.3 36.4 -89.1 -49.7 1.3 14.4 -1.0 67 67 A D - 0 0 86 1,-0.1 4,-0.4 -51,-0.1 -17,-0.2 -0.559 68.8-141.0-100.9 167.4 -0.9 14.4 -4.1 68 68 A S S >> S+ 0 0 41 -2,-0.2 4,-1.4 2,-0.2 3,-1.1 0.871 96.3 63.3 -92.4 -48.5 -4.2 12.6 -4.8 69 69 A H H 3> S+ 0 0 102 1,-0.3 4,-1.9 2,-0.2 3,-0.4 0.884 96.7 62.0 -41.7 -49.8 -3.7 11.6 -8.4 70 70 A S H 3> S+ 0 0 1 1,-0.3 4,-3.2 2,-0.2 5,-0.3 0.898 98.8 55.1 -43.3 -51.9 -0.8 9.4 -7.2 71 71 A A H <> S+ 0 0 10 -3,-1.1 4,-2.4 -4,-0.4 -1,-0.3 0.919 104.2 54.8 -48.2 -51.4 -3.3 7.5 -5.1 72 72 A L H X S+ 0 0 100 -4,-1.4 4,-1.7 -3,-0.4 3,-0.4 0.940 111.0 44.0 -47.0 -58.9 -5.3 6.8 -8.2 73 73 A S H >X>S+ 0 0 45 -4,-1.9 4,-4.3 1,-0.3 3,-0.9 0.940 114.2 48.8 -52.0 -54.2 -2.3 5.4 -9.9 74 74 A V H 3<5S+ 0 0 0 -4,-3.2 -1,-0.3 1,-0.3 -2,-0.2 0.773 112.3 51.3 -57.3 -26.3 -1.3 3.4 -6.9 75 75 A L H 3<5S+ 0 0 64 -4,-2.4 -1,-0.3 -3,-0.4 -2,-0.3 0.740 116.0 40.4 -81.5 -25.7 -4.9 2.3 -6.8 76 76 A D H X<5S+ 0 0 136 -4,-1.7 3,-1.0 -3,-0.9 -2,-0.2 0.911 120.2 40.8 -86.1 -51.4 -4.7 1.3 -10.5 77 77 A V G ><5S+ 0 0 54 -4,-4.3 3,-4.4 1,-0.3 -3,-0.2 0.584 87.8 102.0 -72.3 -9.8 -1.2 -0.3 -10.4 78 78 A D G 3 < + 0 0 20 -5,-0.5 9,-0.4 1,-0.3 -1,-0.3 0.855 61.8 76.8 -39.4 -44.8 -2.4 -1.7 -7.1 79 79 A G G < S+ 0 0 43 -3,-1.0 -1,-0.3 -4,-0.2 8,-0.2 0.752 77.0 107.7 -38.7 -29.3 -2.9 -4.9 -9.0 80 80 A M S < S- 0 0 35 -3,-4.4 7,-1.3 6,-0.1 2,-0.4 0.150 70.3-125.3 -45.1 169.9 0.9 -5.1 -8.7 81 81 A K E -D 86 0B 139 5,-0.2 2,-0.5 7,-0.0 5,-0.2 -0.977 12.6-153.4-128.5 140.4 2.5 -7.7 -6.4 82 82 A V E > S-D 85 0B 14 3,-3.1 3,-2.1 -2,-0.4 -41,-0.0 -0.962 81.2 -10.0-117.3 125.0 5.0 -7.2 -3.7 83 83 A K T 3 S- 0 0 132 -2,-0.5 -1,-0.2 1,-0.3 3,-0.1 0.826 129.6 -58.3 59.5 32.2 7.4 -9.9 -2.6 84 84 A G T 3 S+ 0 0 68 1,-0.3 2,-0.5 -3,-0.2 -1,-0.3 0.561 115.7 124.4 73.9 8.7 5.3 -12.2 -4.8 85 85 A R E < -D 82 0B 99 -3,-2.1 -3,-3.1 -62,-0.0 2,-0.4 -0.880 66.0-121.8-106.1 132.8 2.3 -11.2 -2.7 86 86 A A E -D 81 0B 18 -2,-0.5 -63,-3.3 -5,-0.2 -62,-0.4 -0.577 30.4-156.6 -73.9 125.5 -0.8 -9.8 -4.2 87 87 A V E -B 22 0A 0 -7,-1.3 2,-0.4 -9,-0.4 -65,-0.2 -0.686 7.4-161.8-102.7 157.1 -1.6 -6.4 -2.7 88 88 A K E -B 21 0A 128 -67,-3.0 -67,-2.7 -2,-0.3 2,-0.4 -0.949 2.4-165.9-143.9 118.4 -4.9 -4.6 -2.5 89 89 A I E -B 20 0A 17 -2,-0.4 -69,-0.2 -69,-0.2 2,-0.2 -0.853 10.3-176.1-106.7 140.1 -5.5 -0.9 -1.9 90 90 A S E -B 19 0A 72 -71,-3.0 -71,-1.4 -2,-0.4 -2,-0.0 -0.688 31.8-100.5-124.9 177.9 -8.8 0.6 -1.0 91 91 A G - 0 0 50 -2,-0.2 2,-2.8 -73,-0.2 -73,-0.1 -0.890 20.6-155.7-108.7 105.1 -10.3 4.0 -0.4 92 92 A P + 0 0 61 0, 0.0 2,-0.4 0, 0.0 -75,-0.1 -0.335 60.7 108.8 -75.0 59.6 -10.6 4.9 3.3 93 93 A S + 0 0 83 -2,-2.8 2,-0.2 2,-0.0 -2,-0.1 -0.992 29.4 144.2-141.7 130.1 -13.4 7.3 2.5 94 94 A S 0 0 130 -2,-0.4 0, 0.0 0, 0.0 0, 0.0 -0.762 360.0 360.0-168.3 116.4 -17.1 7.1 3.3 95 95 A G 0 0 132 -2,-0.2 -2,-0.0 0, 0.0 0, 0.0 -0.611 360.0 360.0 -97.1 360.0 -19.5 9.8 4.3