==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/RNA 05-NOV-96 1ULL . COMPND 2 MOLECULE: RNA (5'-R . SOURCE 2 SYNTHETIC: YES; . AUTHOR X.YE,A.GORIN,A.D.ELLINGTON,D.J.PATEL . 16 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2221.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 11 68.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 18.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 43.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 B T > 0 0 139 0, 0.0 3,-0.8 0, 0.0 4,-0.4 0.000 360.0 360.0 360.0 178.2 -1.6 11.5 0.9 2 2 B R T 3> + 0 0 188 1,-0.2 4,-2.2 2,-0.2 3,-0.3 0.719 360.0 79.9 -74.4 -27.8 -4.1 8.9 2.3 3 3 B Q T 34 S+ 0 0 107 2,-0.2 -1,-0.2 1,-0.2 5,-0.0 0.492 84.1 64.9 -62.3 -4.7 -2.0 6.1 0.7 4 4 B A T X> S+ 0 0 43 -3,-0.8 4,-3.8 2,-0.2 3,-1.9 0.946 104.6 40.6 -80.6 -57.0 0.4 6.5 3.7 5 5 B R T 34>S+ 0 0 127 -4,-0.4 5,-1.9 -3,-0.3 4,-0.5 0.927 111.5 60.1 -54.3 -43.6 -2.3 5.3 6.2 6 6 B R T 3<5S+ 0 0 143 -4,-2.2 -1,-0.3 1,-0.2 -2,-0.2 0.228 120.5 26.3 -69.0 18.1 -3.1 2.7 3.4 7 7 B N T <>5S+ 0 0 87 -3,-1.9 4,-1.1 -5,-0.2 -2,-0.2 0.439 129.5 40.1-143.9 -37.0 0.7 1.5 3.9 8 8 B R H X5S+ 0 0 160 -4,-3.8 4,-1.9 2,-0.2 3,-0.3 0.962 128.4 30.7 -80.4 -69.4 1.4 2.5 7.6 9 9 B R H >5S+ 0 0 163 -4,-0.5 4,-2.6 1,-0.2 5,-0.2 0.919 121.0 56.3 -56.0 -43.9 -2.0 1.5 9.2 10 10 B R H >< S+ 0 0 137 -4,-2.6 3,-3.1 -5,-0.2 -2,-0.2 0.954 101.7 61.4 -82.9 -55.6 -3.3 -3.9 10.8 14 14 B E H 3< S+ 0 0 96 -4,-2.8 -3,-0.1 1,-0.3 -2,-0.1 0.837 91.7 74.4 -40.4 -39.4 -3.0 -6.7 8.0 15 15 B R T 3< 0 0 181 -4,-0.5 -1,-0.3 1,-0.3 -2,-0.1 0.726 360.0 360.0 -40.1 -31.3 -0.9 -8.6 10.8 16 16 B Q < 0 0 200 -3,-3.1 -1,-0.3 -4,-0.1 -2,-0.2 0.768 360.0 360.0 -84.0 360.0 -4.3 -9.2 12.6