==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 28-AUG-03 1UMQ . COMPND 2 MOLECULE: PHOTOSYNTHETIC APPARATUS REGULATORY PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; . AUTHOR C.LAGURI,M.K.PHILLIPS-JONES,M.P.WILLIAMSON . 60 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5349.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 37 61.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 26 43.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 22 A L 0 0 193 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 139.5 22.7 18.4 16.9 2 23 A A - 0 0 68 3,-0.0 2,-0.2 5,-0.0 0, 0.0 0.142 360.0-124.3 61.7 177.7 22.9 14.6 17.5 3 24 A K > + 0 0 180 3,-0.0 3,-1.6 0, 0.0 2,-0.8 -0.628 69.3 52.8-136.4-162.9 22.1 11.9 15.0 4 25 A G T 3 S- 0 0 57 1,-0.3 3,-0.3 -2,-0.2 -2,-0.0 -0.559 126.6 -0.8 73.7-107.7 19.9 8.9 14.8 5 26 A E T 3 S+ 0 0 191 -2,-0.8 -1,-0.3 1,-0.2 -3,-0.0 0.523 124.4 72.1 -96.1 -7.1 16.3 10.0 15.6 6 27 A S S < S+ 0 0 69 -3,-1.6 -1,-0.2 1,-0.2 -2,-0.2 0.646 101.2 46.9 -80.9 -15.0 17.4 13.6 16.2 7 28 A L S S- 0 0 112 -3,-0.3 -1,-0.2 0, 0.0 -3,-0.1 -0.868 99.2-118.6-132.2 95.8 17.9 14.1 12.5 8 29 A P - 0 0 102 0, 0.0 -3,-0.1 0, 0.0 -2,-0.1 0.016 25.0-137.4 -32.3 119.8 15.1 12.7 10.3 9 30 A P - 0 0 101 0, 0.0 -4,-0.0 0, 0.0 0, 0.0 -0.734 16.3-129.3 -85.1 132.0 16.2 9.9 7.9 10 31 A P - 0 0 77 0, 0.0 2,-2.8 0, 0.0 3,-0.4 -0.119 43.0 -79.1 -67.5 172.9 14.9 10.0 4.3 11 32 A P S S+ 0 0 104 0, 0.0 5,-0.1 0, 0.0 0, 0.0 -0.256 76.2 145.9 -70.9 55.1 13.3 7.0 2.6 12 33 A E + 0 0 144 -2,-2.8 4,-0.1 3,-0.1 3,-0.0 0.831 49.3 75.3 -62.8 -35.3 16.8 5.6 2.0 13 34 A N S S- 0 0 122 -3,-0.4 3,-0.2 1,-0.1 0, 0.0 -0.644 78.3-137.6 -87.2 134.3 15.6 2.0 2.4 14 35 A P S S+ 0 0 111 0, 0.0 2,-1.7 0, 0.0 -1,-0.1 0.911 101.8 60.4 -48.7 -48.1 13.6 0.3 -0.4 15 36 A M S S+ 0 0 152 4,-0.1 -2,-0.1 5,-0.0 2,-0.1 -0.566 79.9 177.6 -86.9 74.4 11.3 -1.2 2.2 16 37 A S > - 0 0 42 -2,-1.7 4,-2.6 -3,-0.2 5,-0.2 -0.371 41.4-109.2 -73.0 161.9 10.0 2.1 3.7 17 38 A A H > S+ 0 0 90 1,-0.2 4,-0.6 2,-0.2 -1,-0.1 0.890 120.3 30.0 -64.2 -41.8 7.4 2.0 6.4 18 39 A D H > S+ 0 0 79 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.768 113.2 65.3 -87.5 -26.8 4.6 3.3 4.2 19 40 A R H > S+ 0 0 120 1,-0.2 4,-2.1 2,-0.2 -2,-0.2 0.917 100.6 51.2 -59.9 -44.1 6.1 1.8 1.1 20 41 A V H X S+ 0 0 63 -4,-2.6 4,-1.2 1,-0.2 -1,-0.2 0.862 109.3 52.4 -60.6 -35.9 5.5 -1.7 2.5 21 42 A R H >X S+ 0 0 109 -4,-0.6 4,-2.2 -5,-0.2 3,-0.8 0.959 107.4 49.1 -67.1 -49.5 1.9 -0.7 3.2 22 43 A W H 3X S+ 0 0 59 -4,-2.5 4,-1.7 1,-0.3 -1,-0.2 0.881 109.0 54.9 -58.7 -38.1 1.2 0.5 -0.4 23 44 A E H 3X S+ 0 0 107 -4,-2.1 4,-1.7 1,-0.2 -1,-0.3 0.847 108.9 47.5 -63.2 -30.9 2.7 -2.7 -1.6 24 45 A H H S+ 0 0 22 -4,-2.5 5,-3.2 1,-0.2 6,-0.3 0.820 110.5 47.0 -57.6 -31.7 -6.7 -4.8 -4.2 30 51 A E H ><5S+ 0 0 136 -4,-2.2 3,-0.8 3,-0.2 -1,-0.2 0.936 114.4 43.7 -72.0 -48.7 -5.9 -7.2 -7.1 31 52 A M H 3<5S+ 0 0 116 -4,-1.1 -2,-0.2 1,-0.3 -3,-0.1 0.818 116.4 45.1 -74.2 -31.4 -7.1 -10.4 -5.4 32 53 A C T 3<5S- 0 0 31 -4,-2.9 -1,-0.3 3,-0.1 -2,-0.2 0.442 113.2-119.2 -89.7 0.9 -10.3 -9.0 -3.9 33 54 A D T < 5S- 0 0 119 -3,-0.8 -3,-0.2 -5,-0.3 3,-0.1 0.981 76.6 -37.6 56.3 62.1 -11.0 -7.3 -7.3 34 55 A R S - 0 0 72 -6,-0.3 4,-2.2 -7,-0.3 -1,-0.2 -0.669 21.8-172.0 -78.1 100.6 -12.7 -4.5 -2.7 36 57 A V H > S+ 0 0 28 -2,-1.2 4,-2.7 1,-0.2 5,-0.2 0.808 81.1 57.9 -65.5 -28.9 -11.6 -1.5 -0.6 37 58 A S H > S+ 0 0 77 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.945 109.0 42.4 -68.6 -48.1 -13.1 -3.1 2.5 38 59 A E H > S+ 0 0 92 2,-0.2 4,-2.3 1,-0.2 5,-0.2 0.915 115.1 52.9 -62.3 -42.3 -11.0 -6.3 2.3 39 60 A T H X S+ 0 0 0 -4,-2.2 4,-1.3 1,-0.2 -2,-0.2 0.958 110.7 44.0 -59.1 -54.3 -8.0 -4.3 1.3 40 61 A A H X>S+ 0 0 2 -4,-2.7 5,-2.0 1,-0.2 4,-0.6 0.849 116.0 48.4 -61.3 -35.3 -8.2 -1.9 4.3 41 62 A R H <5S+ 0 0 161 -4,-2.0 -1,-0.2 3,-0.2 -2,-0.2 0.837 113.1 47.3 -75.0 -31.3 -8.9 -4.8 6.7 42 63 A R H <5S+ 0 0 111 -4,-2.3 -2,-0.2 1,-0.2 -1,-0.2 0.626 115.1 46.5 -83.3 -16.4 -6.0 -6.8 5.2 43 64 A L H <5S- 0 0 24 -4,-1.3 -2,-0.2 -5,-0.2 -1,-0.2 0.515 115.9-120.0 -95.3 -10.4 -3.8 -3.6 5.5 44 65 A N T <5S+ 0 0 125 -4,-0.6 2,-0.3 1,-0.2 -3,-0.2 0.996 72.5 106.9 62.9 69.6 -5.1 -3.1 9.1 45 66 A M S > - 0 0 143 -2,-0.3 4,-1.8 1,-0.1 3,-0.6 -0.514 41.3-115.4 -82.6 152.6 -9.9 2.2 8.1 47 68 A R H 3> S+ 0 0 101 1,-0.3 4,-2.6 2,-0.2 5,-0.1 0.875 119.4 55.4 -56.4 -37.8 -11.8 2.1 4.9 48 69 A R H 3> S+ 0 0 159 2,-0.2 4,-3.3 1,-0.2 -1,-0.3 0.863 103.1 56.2 -61.4 -37.6 -11.2 5.8 4.5 49 70 A T H <> S+ 0 0 52 -3,-0.6 4,-2.2 2,-0.2 -2,-0.2 0.958 110.6 42.1 -59.9 -52.4 -7.4 5.2 4.9 50 71 A L H X S+ 0 0 0 -4,-1.8 4,-2.2 1,-0.2 -2,-0.2 0.923 116.2 51.2 -59.4 -45.1 -7.4 2.7 1.9 51 72 A Q H X S+ 0 0 51 -4,-2.6 4,-3.4 1,-0.2 -2,-0.2 0.929 109.5 47.6 -59.8 -50.0 -9.7 5.1 -0.0 52 73 A R H X S+ 0 0 159 -4,-3.3 4,-1.7 1,-0.2 -1,-0.2 0.885 110.2 53.6 -61.9 -38.5 -7.5 8.2 0.5 53 74 A I H < S+ 0 0 16 -4,-2.2 4,-0.3 -5,-0.2 -1,-0.2 0.899 116.2 38.8 -62.1 -41.6 -4.4 6.2 -0.5 54 75 A L H >< S+ 0 0 5 -4,-2.2 3,-1.1 1,-0.2 4,-0.4 0.895 114.8 55.1 -70.1 -40.7 -6.2 5.2 -3.7 55 76 A A H 3< S+ 0 0 21 -4,-3.4 -2,-0.2 1,-0.3 -1,-0.2 0.675 101.2 56.2 -74.0 -22.4 -7.7 8.6 -4.1 56 77 A K T 3< S+ 0 0 135 -4,-1.7 -1,-0.3 -5,-0.2 -2,-0.2 0.622 113.2 42.0 -81.9 -13.1 -4.4 10.5 -3.9 57 78 A R S < S+ 0 0 143 -3,-1.1 -2,-0.2 -4,-0.3 -1,-0.2 0.338 121.3 39.1-113.2 4.0 -3.1 8.4 -6.9 58 79 A S S S- 0 0 31 -4,-0.4 2,-0.2 2,-0.1 -1,-0.1 -0.986 82.8-114.3-149.3 154.6 -6.2 8.5 -9.0 59 80 A P 0 0 145 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 0.049 360.0 360.0 -77.8 29.8 -9.0 11.0 -9.8 60 81 A R 0 0 171 -6,-0.2 -2,-0.1 -2,-0.2 -3,-0.1 -0.892 360.0 360.0-112.1 360.0 -11.4 8.8 -7.9