==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTIONAL STIMULATOR 26-NOV-03 1USM . COMPND 2 MOLECULE: HEPATOCYTE NUCLEAR FACTOR 1-ALPHA; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR T.H.TAHIROV,E.INAGAKI . 77 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4788.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 74.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 23.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 27 35.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 133 0, 0.0 2,-0.2 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 147.1 -16.2 37.3 -76.1 2 2 A D - 0 0 104 1,-0.1 11,-0.1 10,-0.0 9,-0.1 -0.556 360.0 -73.5-100.5 167.9 -14.1 40.4 -76.2 3 3 A W - 0 0 20 -2,-0.2 2,-0.4 9,-0.1 9,-0.2 -0.259 49.4-166.0 -60.0 144.0 -10.4 40.9 -75.4 4 4 A E E -A 11 0A 116 7,-2.1 7,-2.9 -3,-0.1 2,-0.9 -0.982 24.1-122.8-135.1 145.7 -9.5 40.8 -71.8 5 5 A E E A 10 0A 103 -2,-0.4 5,-0.2 5,-0.2 -2,-0.0 -0.794 360.0 360.0 -88.3 106.5 -6.3 41.9 -69.9 6 6 A R 0 0 135 3,-2.7 3,-2.6 -2,-0.9 -2,-0.0 -0.792 360.0 360.0 -99.0 360.0 -5.2 38.8 -68.0 7 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 8 10 A K 0 0 113 0, 0.0 2,-0.3 0, 0.0 -3,-0.1 0.000 360.0 360.0 360.0 104.1 -0.1 41.1 -68.1 9 11 A R - 0 0 71 -3,-2.6 -3,-2.7 45,-0.1 2,-0.7 -0.962 360.0-118.3-142.2 157.0 -1.4 40.3 -71.6 10 12 A L E -AB 5 53A 12 43,-3.0 43,-2.6 -2,-0.3 2,-0.3 -0.870 45.7-178.5 -96.9 115.9 -4.3 41.0 -73.9 11 13 A V E +AB 4 52A 0 -7,-2.9 -7,-2.1 -2,-0.7 2,-0.3 -0.910 19.2 162.6-127.6 146.1 -6.0 37.7 -74.6 12 14 A K E - B 0 51A 12 39,-1.7 39,-2.7 -2,-0.3 2,-0.4 -0.973 23.2-142.2-156.3 141.4 -8.9 36.3 -76.6 13 15 A T E - B 0 50A 28 -2,-0.3 2,-0.4 37,-0.2 37,-0.2 -0.863 11.4-156.0-107.7 143.0 -10.0 32.8 -77.7 14 16 A F E - B 0 49A 11 35,-2.8 35,-2.2 -2,-0.4 2,-0.3 -0.977 12.5-138.9-120.2 130.0 -11.5 32.2 -81.1 15 17 A A E + B 0 48A 90 -2,-0.4 33,-0.2 33,-0.2 32,-0.1 -0.659 22.6 174.4 -93.1 145.0 -13.7 29.1 -81.7 16 18 A F - 0 0 41 31,-2.1 4,-0.0 -2,-0.3 3,-0.0 -0.926 40.5-116.6-140.9 162.4 -13.7 26.9 -84.8 17 19 A P S S- 0 0 86 0, 0.0 2,-0.2 0, 0.0 3,-0.1 0.656 92.3 -7.0 -76.5 -15.4 -15.4 23.6 -85.9 18 20 A N S > S- 0 0 45 1,-0.1 29,-1.1 27,-0.1 4,-0.5 -0.800 79.5 -86.5-156.0-164.1 -12.1 21.7 -86.2 19 21 A F H > S+ 0 0 87 27,-0.2 4,-2.7 -2,-0.2 5,-0.2 0.869 114.2 61.1 -85.7 -43.3 -8.3 22.0 -86.0 20 22 A R H > S+ 0 0 131 1,-0.2 4,-2.3 2,-0.2 5,-0.1 0.897 106.6 44.3 -50.8 -50.9 -7.8 22.9 -89.7 21 23 A E H > S+ 0 0 90 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.831 111.5 54.5 -66.9 -32.3 -9.8 26.1 -89.5 22 24 A A H X S+ 0 0 0 -4,-0.5 4,-2.3 2,-0.2 -2,-0.2 0.936 110.5 46.0 -65.8 -45.5 -8.1 27.1 -86.2 23 25 A L H X S+ 0 0 54 -4,-2.7 4,-2.1 1,-0.2 -2,-0.2 0.891 109.1 55.7 -64.2 -39.6 -4.7 26.7 -87.9 24 26 A D H X S+ 0 0 78 -4,-2.3 4,-1.3 -5,-0.2 -1,-0.2 0.925 109.9 46.0 -58.6 -44.8 -5.8 28.7 -90.9 25 27 A F H X S+ 0 0 7 -4,-2.1 4,-2.2 1,-0.2 3,-0.3 0.909 108.2 56.1 -65.4 -41.8 -6.8 31.6 -88.7 26 28 A A H X S+ 0 0 7 -4,-2.3 4,-2.2 1,-0.2 -1,-0.2 0.882 104.9 53.5 -58.2 -38.6 -3.5 31.3 -86.8 27 29 A N H X S+ 0 0 104 -4,-2.1 4,-1.9 2,-0.2 -1,-0.2 0.859 106.9 50.9 -66.1 -34.3 -1.7 31.8 -90.0 28 30 A R H X S+ 0 0 106 -4,-1.3 4,-2.0 -3,-0.3 -1,-0.2 0.889 109.9 49.7 -69.5 -38.1 -3.6 34.9 -90.8 29 31 A V H X S+ 0 0 0 -4,-2.2 4,-2.5 1,-0.2 -2,-0.2 0.888 109.3 54.0 -66.1 -36.4 -2.7 36.3 -87.4 30 32 A G H X S+ 0 0 26 -4,-2.2 4,-2.0 2,-0.2 -2,-0.2 0.899 107.0 49.2 -63.6 -40.6 0.9 35.4 -88.1 31 33 A A H X S+ 0 0 43 -4,-1.9 4,-1.9 2,-0.2 -1,-0.2 0.898 110.8 51.0 -65.0 -40.0 0.9 37.4 -91.4 32 34 A L H X S+ 0 0 2 -4,-2.0 4,-2.1 1,-0.2 -2,-0.2 0.926 108.5 51.9 -61.3 -45.7 -0.6 40.3 -89.6 33 35 A A H X>S+ 0 0 0 -4,-2.5 5,-1.6 1,-0.2 4,-0.8 0.884 107.8 52.0 -58.7 -41.5 2.2 40.0 -86.9 34 36 A E H <5S+ 0 0 128 -4,-2.0 3,-0.3 1,-0.2 -1,-0.2 0.888 110.2 48.8 -63.8 -40.0 4.8 40.1 -89.7 35 37 A R H <5S+ 0 0 150 -4,-1.9 -2,-0.2 1,-0.2 -1,-0.2 0.870 117.7 39.3 -68.1 -38.7 3.4 43.2 -91.2 36 38 A E H <5S- 0 0 57 -4,-2.1 -1,-0.2 2,-0.2 -2,-0.2 0.417 103.1-126.8 -92.9 -0.3 3.2 45.1 -87.9 37 39 A N T <5S+ 0 0 137 -4,-0.8 2,-0.4 -3,-0.3 -3,-0.2 0.839 77.0 107.4 57.4 35.5 6.5 43.9 -86.5 38 40 A H < - 0 0 29 -5,-1.6 -2,-0.2 -6,-0.2 -1,-0.2 -0.956 54.3-156.1-145.2 122.6 4.8 42.7 -83.3 39 41 A H - 0 0 100 -2,-0.4 15,-0.3 15,-0.1 2,-0.1 -0.816 0.5-151.6-110.5 142.5 4.2 39.0 -82.6 40 42 A P - 0 0 29 0, 0.0 2,-0.6 0, 0.0 13,-0.2 -0.266 26.0-110.3 -93.7 179.5 1.7 37.2 -80.3 41 43 A R E -C 52 0A 122 11,-2.0 11,-1.9 -2,-0.1 2,-0.4 -0.988 40.7-162.2-109.9 120.6 1.8 34.0 -78.5 42 44 A L E -C 51 0A 58 -2,-0.6 2,-0.5 9,-0.2 9,-0.2 -0.909 12.9-165.1-109.6 134.3 -0.6 31.7 -80.3 43 45 A T E -C 50 0A 58 7,-2.4 7,-2.5 -2,-0.4 2,-0.5 -0.972 11.6-171.1-119.9 116.0 -2.1 28.5 -78.9 44 46 A V E +C 49 0A 46 -2,-0.5 2,-0.3 5,-0.2 5,-0.2 -0.920 18.2 144.0-111.7 129.3 -3.7 26.3 -81.5 45 47 A E E > -C 48 0A 72 3,-2.3 3,-2.1 -2,-0.5 -27,-0.1 -0.909 60.6 -50.9-149.7 173.6 -5.8 23.2 -80.6 46 48 A W T 3 S- 0 0 184 -2,-0.3 -27,-0.2 1,-0.3 -30,-0.0 -0.326 124.2 -5.7 -54.0 122.5 -8.8 21.4 -81.9 47 49 A G T 3 S+ 0 0 13 -29,-1.1 -31,-2.1 -32,-0.1 2,-0.3 0.520 122.6 73.0 71.5 8.6 -11.5 24.0 -82.3 48 50 A R E < -BC 15 45A 111 -3,-2.1 -3,-2.3 -33,-0.2 2,-0.4 -0.978 47.4-168.5-159.8 144.2 -9.7 26.9 -80.8 49 51 A V E -BC 14 44A 0 -35,-2.2 -35,-2.8 -2,-0.3 2,-0.5 -0.999 15.0-159.0-127.3 126.0 -7.0 29.5 -81.2 50 52 A T E -BC 13 43A 15 -7,-2.5 -7,-2.4 -2,-0.4 2,-0.5 -0.922 8.6-162.5-105.2 130.3 -5.9 31.6 -78.2 51 53 A V E -BC 12 42A 0 -39,-2.7 -39,-1.7 -2,-0.5 2,-0.4 -0.966 6.4-173.7-116.7 126.8 -4.2 34.9 -79.1 52 54 A E E -BC 11 41A 12 -11,-1.9 -11,-2.0 -2,-0.5 2,-0.4 -0.984 0.9-171.5-124.1 129.2 -2.1 36.7 -76.6 53 55 A W E +B 10 0A 0 -43,-2.6 -43,-3.0 -2,-0.4 2,-0.3 -0.974 20.5 137.3-121.3 130.1 -0.6 40.2 -77.1 54 56 A W - 0 0 77 -2,-0.4 2,-0.6 -15,-0.3 7,-0.2 -0.974 47.4-118.1-160.6 164.6 1.8 41.9 -74.8 55 57 A T B >> -D 60 0B 25 5,-2.8 5,-1.6 -2,-0.3 4,-1.1 -0.946 18.6-156.9-113.2 110.5 5.0 44.0 -75.0 56 58 A H T >45S+ 0 0 165 -2,-0.6 3,-1.0 1,-0.2 -1,-0.2 0.902 90.4 52.7 -50.7 -53.1 7.9 42.3 -73.2 57 59 A S T 345S+ 0 0 114 1,-0.3 -1,-0.2 2,-0.1 -2,-0.0 0.835 114.1 44.0 -56.5 -34.8 10.0 45.4 -72.5 58 60 A A T 345S- 0 0 63 -3,-0.5 -1,-0.3 2,-0.2 -2,-0.2 0.597 102.9-132.3 -86.3 -13.5 6.9 47.1 -70.9 59 61 A G T <<5S+ 0 0 56 -4,-1.1 2,-0.3 -3,-1.0 -3,-0.2 0.832 76.4 24.3 65.4 31.8 5.9 44.0 -68.9 60 62 A G B - 0 0 39 -2,-0.4 4,-1.7 1,-0.0 3,-0.4 -0.673 48.0 -91.0-121.6 177.5 0.5 48.8 -74.6 63 65 A E H > S+ 0 0 114 1,-0.2 4,-2.2 -2,-0.2 5,-0.2 0.862 124.8 57.8 -58.8 -36.6 -1.2 50.7 -77.4 64 66 A K H > S+ 0 0 62 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.892 104.0 52.3 -61.9 -39.1 0.5 48.5 -80.0 65 67 A D H > S+ 0 0 0 -3,-0.4 4,-2.1 1,-0.2 -1,-0.2 0.906 109.0 49.1 -63.8 -41.1 -1.1 45.4 -78.4 66 68 A R H X S+ 0 0 81 -4,-1.7 4,-2.1 2,-0.2 -1,-0.2 0.872 109.9 52.1 -66.3 -35.5 -4.5 46.9 -78.5 67 69 A E H X S+ 0 0 69 -4,-2.2 4,-2.4 2,-0.2 -2,-0.2 0.930 109.7 49.1 -64.6 -45.0 -4.0 47.8 -82.2 68 70 A M H X S+ 0 0 0 -4,-2.5 4,-2.0 1,-0.2 -2,-0.2 0.875 108.7 53.8 -62.5 -36.7 -3.0 44.2 -82.9 69 71 A A H X S+ 0 0 4 -4,-2.1 4,-2.2 2,-0.2 -1,-0.2 0.929 110.4 46.1 -63.2 -44.7 -6.1 43.0 -81.1 70 72 A R H X S+ 0 0 144 -4,-2.1 4,-1.9 1,-0.2 -2,-0.2 0.902 112.7 49.5 -65.9 -39.3 -8.3 45.1 -83.2 71 73 A L H X S+ 0 0 56 -4,-2.4 4,-0.9 2,-0.2 -1,-0.2 0.835 108.5 55.1 -68.7 -30.4 -6.6 44.1 -86.4 72 74 A T H >< S+ 0 0 0 -4,-2.0 3,-0.8 -5,-0.2 4,-0.4 0.938 108.9 46.3 -66.8 -47.0 -6.9 40.5 -85.3 73 75 A D H >< S+ 0 0 13 -4,-2.2 3,-1.8 1,-0.2 4,-0.5 0.870 104.1 63.1 -62.6 -36.2 -10.7 40.8 -84.9 74 76 A A H >< S+ 0 0 51 -4,-1.9 3,-1.3 1,-0.3 -1,-0.2 0.798 88.7 70.3 -59.1 -28.8 -10.9 42.6 -88.3 75 77 A L T << S+ 0 0 17 -4,-0.9 -1,-0.3 -3,-0.8 -2,-0.2 0.764 92.9 58.2 -59.6 -25.9 -9.6 39.4 -89.9 76 78 A L T < S- 0 0 62 -3,-1.8 -1,-0.3 -4,-0.4 -2,-0.2 0.732 89.4-154.8 -76.8 -22.8 -13.0 37.8 -89.1 77 79 A Q < 0 0 132 -3,-1.3 -3,-0.1 -4,-0.5 -2,-0.1 0.937 360.0 360.0 42.2 61.8 -14.8 40.5 -91.1 78 80 A R 0 0 236 -5,-0.3 -1,-0.1 0, 0.0 -4,-0.1 0.917 360.0 360.0 -73.9 360.0 -18.0 39.9 -89.0