==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 17-NOV-03 1V4R . COMPND 2 MOLECULE: TRANSCRIPTIONAL REPRESSOR; . SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES; . AUTHOR T.TANAKA,C.KOMATSU,K.KOBAYASHI,M.SUGAI,M.KATAOKA,T.KOHNO . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6683.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 65 65.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 6.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 15.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 12.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 24 24.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 144 0, 0.0 2,-0.6 0, 0.0 41,-0.1 0.000 360.0 360.0 360.0 110.5 9.0 -11.8 9.3 2 2 A P - 0 0 98 0, 0.0 2,-1.0 0, 0.0 0, 0.0 -0.843 360.0-129.3 -92.0 116.2 7.9 -14.7 7.1 3 3 A Y - 0 0 133 -2,-0.6 2,-0.6 1,-0.1 38,-0.2 -0.525 29.1-157.1 -69.6 102.6 9.0 -14.3 3.5 4 4 A K - 0 0 106 -2,-1.0 -1,-0.1 36,-0.7 39,-0.0 -0.729 5.2-138.8 -94.7 118.7 5.8 -14.8 1.8 5 5 A A - 0 0 72 -2,-0.6 2,-0.7 1,-0.1 41,-0.1 -0.490 16.2-117.2 -81.4 142.7 6.0 -15.9 -1.9 6 6 A P - 0 0 48 0, 0.0 39,-0.1 0, 0.0 -1,-0.1 -0.691 26.5-171.6 -79.3 112.2 3.7 -14.6 -4.6 7 7 A E S S- 0 0 185 -2,-0.7 38,-0.1 37,-0.3 -2,-0.0 0.971 75.4 -29.9 -70.3 -56.2 1.7 -17.5 -6.0 8 8 A G S S+ 0 0 80 2,-0.1 2,-0.3 0, 0.0 -1,-0.1 0.055 107.1 105.2-155.9 35.0 0.1 -15.9 -9.0 9 9 A K - 0 0 73 35,-0.2 2,-0.1 1,-0.1 0, 0.0 -0.900 43.0-163.8-123.3 148.9 -0.4 -12.2 -8.2 10 10 A G >> - 0 0 39 -2,-0.3 3,-1.0 35,-0.1 4,-0.7 0.049 57.2 -43.2-105.9-140.5 1.4 -9.1 -9.3 11 11 A Y H 3> S+ 0 0 137 1,-0.2 4,-1.2 2,-0.2 5,-0.0 0.310 119.3 77.0 -80.3 10.8 1.6 -5.5 -8.2 12 12 A A H 3> S+ 0 0 65 2,-0.2 4,-1.9 3,-0.1 -1,-0.2 0.860 93.2 48.3 -84.9 -38.8 -2.1 -5.3 -7.5 13 13 A D H <> S+ 0 0 54 -3,-1.0 4,-2.6 2,-0.2 -2,-0.2 0.864 113.0 48.3 -70.6 -35.5 -1.9 -7.2 -4.3 14 14 A V H X S+ 0 0 0 -4,-0.7 4,-2.5 2,-0.2 5,-0.2 0.922 110.1 50.6 -71.6 -42.8 0.9 -5.1 -3.0 15 15 A A H X S+ 0 0 12 -4,-1.2 4,-0.9 1,-0.2 -2,-0.2 0.886 113.5 48.6 -58.8 -37.5 -0.9 -1.9 -4.0 16 16 A T H < S+ 0 0 95 -4,-1.9 3,-0.4 1,-0.2 4,-0.3 0.929 115.0 41.8 -67.8 -46.1 -3.8 -3.3 -2.1 17 17 A H H >X S+ 0 0 41 -4,-2.6 4,-1.4 1,-0.2 3,-0.9 0.746 105.6 64.5 -78.2 -20.8 -1.9 -4.2 1.0 18 18 A F H 3X S+ 0 0 4 -4,-2.5 4,-1.9 1,-0.3 -1,-0.2 0.826 91.5 64.5 -69.7 -29.2 0.1 -1.0 1.0 19 19 A R H 3< S+ 0 0 54 -4,-0.9 -1,-0.3 -3,-0.4 -2,-0.2 0.748 102.8 50.4 -61.7 -23.4 -3.1 0.8 1.6 20 20 A T H X>>S+ 0 0 22 -3,-0.9 3,-1.5 -4,-0.3 4,-1.1 0.902 104.2 55.2 -80.5 -44.3 -3.1 -1.0 4.9 21 21 A L H 3<>S+ 0 0 6 -4,-1.4 6,-1.0 1,-0.3 5,-0.5 0.866 104.9 54.9 -53.5 -40.8 0.5 -0.1 5.8 22 22 A I T 3<5S+ 0 0 12 -4,-1.9 -1,-0.3 3,-0.2 -2,-0.2 0.638 102.8 60.5 -72.8 -14.3 -0.4 3.6 5.4 23 23 A K T <45S- 0 0 96 -3,-1.5 -2,-0.2 -4,-0.2 -1,-0.1 0.976 140.9 -37.6 -75.9 -75.9 -3.2 3.2 7.9 24 24 A S T <5S+ 0 0 77 -4,-1.1 2,-0.6 4,-0.1 4,-0.3 0.649 100.2 122.1-119.4 -31.9 -1.4 2.1 11.1 25 25 A G T - 0 0 43 -2,-0.4 3,-1.8 -4,-0.3 2,-0.5 -0.233 54.4 -76.1 -65.5 166.3 1.7 6.4 8.5 29 29 A P T 3 S+ 0 0 75 0, 0.0 45,-0.3 0, 0.0 -1,-0.1 -0.542 124.2 40.4 -74.0 121.3 1.5 9.4 6.1 30 30 A G T 3 S+ 0 0 35 43,-1.7 2,-0.3 1,-0.6 44,-0.2 0.251 94.9 102.6 119.3 -6.5 4.5 11.5 6.9 31 31 A D S < S- 0 0 74 -3,-1.8 42,-3.9 42,-0.5 -1,-0.6 -0.743 73.0-108.7-108.6 158.7 6.9 8.7 7.4 32 32 A T B -A 72 0A 47 40,-0.3 40,-0.3 -2,-0.3 38,-0.1 -0.591 40.1 -88.7 -94.4 148.5 9.6 7.5 4.9 33 33 A L - 0 0 32 38,-3.4 38,-0.2 -2,-0.2 -1,-0.1 -0.163 39.8-134.0 -54.8 135.7 9.5 4.3 2.9 34 34 A P - 0 0 29 0, 0.0 -1,-0.1 0, 0.0 2,-0.1 -0.306 35.1 -80.5 -78.4 171.3 11.0 1.1 4.4 35 35 A S >> - 0 0 80 1,-0.1 3,-1.7 -2,-0.1 4,-1.0 -0.379 44.5-103.8 -72.3 156.9 13.3 -1.2 2.6 36 36 A V H 3> S+ 0 0 66 1,-0.3 4,-3.2 2,-0.2 -1,-0.1 0.709 117.0 71.8 -55.0 -21.6 11.9 -3.8 0.2 37 37 A A H 3> S+ 0 0 35 2,-0.2 4,-0.9 1,-0.2 -1,-0.3 0.887 95.4 49.2 -63.1 -41.2 12.5 -6.4 3.0 38 38 A D H X> S+ 0 0 38 -3,-1.7 4,-1.7 2,-0.2 3,-0.8 0.956 115.6 42.8 -63.4 -51.1 9.7 -5.1 5.2 39 39 A I H 3X S+ 0 0 3 -4,-1.0 4,-4.4 1,-0.2 3,-0.3 0.954 103.9 68.1 -57.0 -50.2 7.2 -5.1 2.3 40 40 A R H 3< S+ 0 0 104 -4,-3.2 -36,-0.7 1,-0.3 5,-0.3 0.695 109.8 34.3 -44.7 -33.6 8.5 -8.5 1.1 41 41 A A H << S+ 0 0 6 -4,-0.9 -1,-0.3 -3,-0.8 -2,-0.2 0.794 121.7 45.7 -93.4 -33.9 7.0 -10.2 4.2 42 42 A Q H < S+ 0 0 51 -4,-1.7 2,-0.6 -3,-0.3 -2,-0.2 0.915 114.3 52.3 -75.1 -44.9 4.0 -8.0 4.6 43 43 A F S < S- 0 0 3 -4,-4.4 2,-2.2 -5,-0.2 -39,-0.3 -0.818 83.2-144.0 -89.5 119.7 3.2 -8.3 1.0 44 44 A G S S+ 0 0 2 -2,-0.6 -37,-0.3 -41,-0.1 2,-0.2 -0.312 70.4 108.8 -73.5 53.6 3.2 -11.9 0.1 45 45 A V S S- 0 0 3 -2,-2.2 2,-0.1 -5,-0.3 -2,-0.1 -0.710 78.9 -75.5-136.4 170.6 4.7 -10.6 -3.1 46 46 A A >> - 0 0 36 -2,-0.2 3,-1.5 1,-0.1 4,-0.9 -0.440 41.1-118.4 -78.5 152.2 7.9 -10.6 -5.1 47 47 A A T 34 S+ 0 0 49 1,-0.3 4,-0.3 2,-0.2 -1,-0.1 0.568 117.5 49.7 -74.1 -5.3 10.7 -8.3 -3.9 48 48 A K T 3> S+ 0 0 137 2,-0.1 4,-0.6 1,-0.1 -1,-0.3 0.683 96.7 71.3 -92.6 -24.2 10.4 -6.4 -7.2 49 49 A T H <> S+ 0 0 12 -3,-1.5 4,-2.3 1,-0.2 3,-0.3 0.783 90.0 59.0 -69.3 -27.9 6.7 -6.1 -7.0 50 50 A V H X S+ 0 0 3 -4,-0.9 4,-2.1 1,-0.2 -1,-0.2 0.963 104.7 50.0 -61.6 -48.7 6.9 -3.5 -4.2 51 51 A S H 4 S+ 0 0 62 -4,-0.3 4,-0.4 1,-0.2 -1,-0.2 0.641 109.7 56.2 -63.5 -14.4 8.9 -1.3 -6.5 52 52 A R H >< S+ 0 0 132 -4,-0.6 3,-1.2 -3,-0.3 4,-0.3 0.952 109.5 39.2 -81.0 -58.2 6.1 -1.9 -9.1 53 53 A A H >X S+ 0 0 0 -4,-2.3 4,-2.3 1,-0.2 3,-2.0 0.750 99.9 79.4 -63.8 -25.4 3.1 -0.8 -7.0 54 54 A L T 3< S+ 0 0 38 -4,-2.1 4,-0.4 1,-0.3 -1,-0.2 0.862 87.3 57.0 -49.1 -38.9 5.3 2.1 -5.7 55 55 A A T <4 S+ 0 0 61 -3,-1.2 -1,-0.3 -4,-0.4 -2,-0.2 0.698 112.6 41.6 -68.7 -18.9 4.6 3.9 -9.0 56 56 A V T X> S+ 0 0 53 -3,-2.0 4,-2.9 -4,-0.3 3,-1.6 0.747 100.9 71.6 -91.1 -28.8 0.9 3.6 -8.2 57 57 A L T 3< S+ 0 0 0 -4,-2.3 6,-3.4 1,-0.3 18,-0.2 0.489 77.7 80.0 -72.6 -1.9 1.4 4.5 -4.5 58 58 A K T 34 S+ 0 0 103 -4,-0.4 18,-1.0 4,-0.2 -1,-0.3 0.915 117.2 12.6 -66.7 -42.4 2.1 8.0 -5.5 59 59 A S T <4 S+ 0 0 61 -3,-1.6 -2,-0.2 -4,-0.2 -1,-0.1 0.773 143.0 38.4 -94.8 -36.2 -1.6 8.5 -5.8 60 60 A E S < S+ 0 0 59 -4,-2.9 18,-0.3 -7,-0.2 -3,-0.3 0.979 124.2 29.6 -84.0 -66.1 -2.6 5.3 -4.1 61 61 A G S S- 0 0 0 -8,-0.2 -3,-0.2 -7,-0.1 -4,-0.2 0.413 106.4-117.6 -83.3 1.2 -0.2 4.6 -1.2 62 62 A L + 0 0 19 14,-0.3 13,-1.8 -6,-0.2 2,-0.3 0.794 62.6 146.0 73.2 37.3 0.3 8.4 -0.7 63 63 A V + 0 0 10 -6,-3.4 2,-0.3 10,-0.3 10,-0.2 -0.758 22.4 176.7-113.2 150.2 4.1 8.5 -1.5 64 64 A S E -B 72 0A 31 8,-1.8 2,-0.8 -2,-0.3 8,-0.6 -0.996 40.4-103.2-148.3 145.3 6.3 11.0 -3.2 65 65 A S E -B 71 0A 116 -2,-0.3 2,-0.7 6,-0.2 6,-0.2 -0.600 42.5-176.0 -67.9 106.8 10.0 11.5 -3.9 66 66 A R E > -B 70 0A 77 4,-1.0 2,-2.9 -2,-0.8 4,-2.4 -0.863 16.4-158.0-114.3 97.4 10.9 14.0 -1.2 67 67 A G T 4 S+ 0 0 95 -2,-0.7 4,-0.1 1,-0.2 -2,-0.1 -0.166 84.4 50.2 -74.7 50.5 14.5 15.0 -1.7 68 68 A A T 4 S+ 0 0 89 -2,-2.9 -1,-0.2 2,-0.3 3,-0.1 0.334 124.8 15.8-142.2 -63.9 14.9 16.2 1.9 69 69 A L T 4 S- 0 0 127 1,-0.4 2,-0.3 -3,-0.1 -2,-0.2 0.585 113.4-114.7 -91.2 -14.4 13.6 13.5 4.3 70 70 A G E < - B 0 66A 30 -4,-2.4 2,-2.1 2,-0.1 -4,-1.0 -0.765 68.5 -12.3 114.1-161.0 13.7 10.9 1.6 71 71 A T E S+ B 0 65A 58 -2,-0.3 -38,-3.4 -6,-0.2 2,-0.3 -0.516 82.5 178.8 -78.8 81.8 11.0 8.9 -0.1 72 72 A V E -AB 32 64A 0 -2,-2.1 2,-1.9 -8,-0.6 -8,-1.8 -0.633 34.4-120.5 -92.9 141.1 8.4 9.9 2.5 73 73 A V S S+ 0 0 0 -42,-3.9 -43,-1.7 -2,-0.3 -42,-0.5 -0.560 80.2 97.1 -88.2 75.7 4.8 8.8 2.3 74 74 A E + 0 0 83 -2,-1.9 -11,-0.3 -45,-0.3 -1,-0.1 -0.454 43.6 114.9-146.6 80.3 3.0 12.1 2.1 75 75 A K S S- 0 0 90 -13,-1.8 -12,-0.1 -18,-0.2 -16,-0.1 0.701 78.5 -7.8 -98.8 -85.6 2.2 12.9 -1.6 76 76 A N - 0 0 83 -18,-1.0 -14,-0.3 -13,-0.2 -13,-0.1 -0.904 64.5-130.3-130.2 95.1 -1.4 13.0 -2.7 77 77 A P - 0 0 96 0, 0.0 -17,-0.1 0, 0.0 3,-0.1 -0.254 42.6-103.1 -45.4 122.6 -4.2 11.9 -0.3 78 78 A I - 0 0 46 -18,-0.3 2,-2.1 1,-0.2 -18,-0.1 -0.227 41.0 -94.7 -56.3 136.1 -6.3 9.5 -2.4 79 79 A V + 0 0 114 -3,-0.1 2,-0.6 2,-0.1 -1,-0.2 -0.351 67.3 155.7 -55.3 79.3 -9.5 11.1 -3.6 80 80 A I + 0 0 72 -2,-2.1 3,-0.1 1,-0.1 -1,-0.0 -0.939 13.3 140.0-113.4 106.8 -11.6 9.8 -0.8 81 81 A T S S+ 0 0 140 -2,-0.6 2,-0.3 1,-0.2 -1,-0.1 0.325 76.4 17.2-120.0 -0.8 -14.7 11.9 -0.1 82 82 A G S >> S- 0 0 33 -3,-0.1 3,-0.7 1,-0.0 4,-0.5 -0.964 82.1-101.9-160.2 171.3 -16.9 8.9 0.6 83 83 A A H 3>>S+ 0 0 79 -2,-0.3 4,-2.0 1,-0.2 5,-0.8 0.495 107.8 77.5 -80.1 -0.5 -16.8 5.2 1.4 84 84 A D H 3>5S+ 0 0 63 3,-0.2 4,-0.6 1,-0.2 -1,-0.2 0.863 89.8 51.5 -77.0 -35.1 -17.6 4.5 -2.2 85 85 A R H <45S+ 0 0 159 -3,-0.7 -1,-0.2 1,-0.1 -2,-0.2 0.831 123.2 27.4 -73.5 -32.5 -14.1 5.1 -3.5 86 86 A L H <5S+ 0 0 88 -4,-0.5 -2,-0.2 1,-0.0 -1,-0.1 0.833 133.1 29.0-100.4 -40.7 -12.4 2.8 -0.9 87 87 A K H <5S- 0 0 60 -4,-2.0 4,-0.2 -5,-0.1 -3,-0.2 0.795 94.2-139.5 -94.1 -30.4 -15.0 0.2 -0.0 88 88 A R ><< - 0 0 137 -5,-0.8 3,-1.2 -4,-0.6 -4,-0.1 0.855 7.8-130.3 66.5 111.2 -16.9 0.1 -3.3 89 89 A M T 3 S+ 0 0 148 1,-0.3 -1,-0.1 -5,-0.2 4,-0.1 0.473 100.6 72.0 -72.4 -0.8 -20.7 -0.2 -2.9 90 90 A E T 3 S+ 0 0 140 -6,-0.2 -1,-0.3 2,-0.1 2,-0.2 0.867 96.4 53.1 -76.0 -39.6 -20.8 -3.0 -5.4 91 91 A K S < S- 0 0 109 -3,-1.2 2,-0.1 -4,-0.2 -4,-0.0 -0.470 99.7 -82.1-100.9 167.1 -19.2 -5.5 -3.0 92 92 A N - 0 0 121 -2,-0.2 2,-1.5 1,-0.1 -1,-0.1 -0.407 34.7-130.0 -68.1 138.6 -19.9 -6.6 0.5 93 93 A G + 0 0 64 -2,-0.1 -1,-0.1 -4,-0.1 2,-0.1 -0.516 48.2 157.3 -90.0 67.8 -18.6 -4.4 3.2 94 94 A M - 0 0 133 -2,-1.5 -3,-0.0 1,-0.2 2,-0.0 -0.370 51.7 -63.2 -86.4 171.3 -16.9 -7.1 5.3 95 95 A R - 0 0 240 -2,-0.1 2,-0.3 1,-0.0 -1,-0.2 -0.271 51.4-173.8 -59.0 130.0 -14.1 -6.5 7.8 96 96 A Y - 0 0 119 -3,-0.1 -1,-0.0 -2,-0.0 -3,-0.0 -0.777 48.1 -72.8-113.0 166.4 -10.8 -5.1 6.4 97 97 A A - 0 0 32 -2,-0.3 3,-0.4 1,-0.2 -74,-0.1 -0.456 51.4-179.8 -62.9 106.5 -7.6 -4.7 8.4 98 98 A P S S+ 0 0 106 0, 0.0 -1,-0.2 0, 0.0 -3,-0.0 0.478 78.0 20.8 -91.5 -4.1 -8.5 -1.6 10.6 99 99 A G 0 0 51 -75,-0.0 -2,-0.1 -74,-0.0 -79,-0.0 -0.063 360.0 360.0-157.8 43.1 -5.2 -1.4 12.4 100 100 A E 0 0 110 -3,-0.4 -80,-0.1 -80,-0.1 -3,-0.1 0.261 360.0 360.0-116.7 360.0 -2.5 -3.2 10.4