==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-NOV-03 1V5N . COMPND 2 MOLECULE: PDI-LIKE HYPOTHETICAL PROTEIN AT1G60420; . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR K.MIYAMOTO,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7390.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 39 43.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 7.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 13.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 133 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-163.3 -0.3 -36.6 16.8 2 2 A S + 0 0 133 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.823 360.0 166.0-165.7 121.2 0.5 -32.9 17.2 3 3 A S - 0 0 119 -2,-0.3 2,-0.2 0, 0.0 0, 0.0 -0.935 22.8-131.8-136.5 158.8 3.1 -30.7 15.6 4 4 A G - 0 0 72 -2,-0.3 2,-0.3 0, 0.0 -2,-0.0 -0.611 15.8-161.4-108.0 169.6 3.8 -26.9 15.3 5 5 A S - 0 0 126 -2,-0.2 2,-0.1 0, 0.0 0, 0.0 -0.942 17.5-112.0-145.4 165.2 4.6 -24.6 12.4 6 6 A S - 0 0 128 -2,-0.3 2,-0.3 1,-0.1 0, 0.0 -0.322 29.3-121.6 -91.9 177.3 6.1 -21.2 11.7 7 7 A G - 0 0 66 -2,-0.1 2,-0.3 0, 0.0 -1,-0.1 -0.819 18.1-160.4-121.5 162.0 4.4 -18.0 10.4 8 8 A T - 0 0 99 -2,-0.3 3,-0.2 1,-0.1 2,-0.1 -0.864 21.6-104.2-135.2 168.8 4.8 -15.7 7.4 9 9 A E S S+ 0 0 170 -2,-0.3 -1,-0.1 1,-0.2 0, 0.0 -0.231 91.2 54.8 -85.5 178.4 3.9 -12.2 6.3 10 10 A E S S+ 0 0 173 1,-0.1 -1,-0.2 -2,-0.1 0, 0.0 0.799 79.1 108.7 66.6 28.8 1.2 -11.1 3.8 11 11 A R + 0 0 175 -3,-0.2 2,-1.3 2,-0.0 3,-0.3 -0.220 32.2 147.8-128.5 42.5 -1.3 -13.0 5.9 12 12 A L + 0 0 82 1,-0.2 4,-0.3 2,-0.1 -3,-0.0 -0.659 9.6 142.4 -83.6 93.4 -3.3 -10.2 7.5 13 13 A K S > S+ 0 0 144 -2,-1.3 4,-1.1 2,-0.1 -1,-0.2 0.873 74.6 34.2 -95.9 -52.2 -6.8 -11.6 7.8 14 14 A E H > S+ 0 0 141 -3,-0.3 4,-1.4 2,-0.2 3,-0.3 0.942 114.2 58.4 -69.4 -49.3 -8.0 -10.2 11.1 15 15 A I H >> S+ 0 0 65 1,-0.2 4,-1.5 2,-0.2 3,-1.0 0.923 102.0 54.5 -45.0 -56.8 -6.2 -6.9 10.8 16 16 A E H 3> S+ 0 0 92 1,-0.3 4,-2.4 -4,-0.3 -1,-0.2 0.901 102.0 58.5 -45.0 -50.2 -8.0 -6.1 7.5 17 17 A A H 3X S+ 0 0 59 -4,-1.1 4,-1.6 -3,-0.3 -1,-0.3 0.879 102.4 55.3 -48.6 -43.2 -11.3 -6.6 9.3 18 18 A K H XX S+ 0 0 124 -4,-1.4 4,-0.9 -3,-1.0 3,-0.7 0.963 107.9 46.2 -55.7 -57.3 -10.3 -3.9 11.8 19 19 A Y H >X S+ 0 0 56 -4,-1.5 3,-2.1 1,-0.3 4,-1.6 0.926 105.9 60.3 -52.1 -50.2 -9.7 -1.2 9.1 20 20 A D H 3< S+ 0 0 90 -4,-2.4 -1,-0.3 1,-0.3 3,-0.2 0.870 98.4 58.7 -45.8 -43.1 -12.9 -2.1 7.3 21 21 A E H X< S+ 0 0 142 -4,-1.6 3,-0.7 -3,-0.7 -1,-0.3 0.818 105.6 49.9 -58.2 -31.3 -14.7 -1.1 10.5 22 22 A I H << S+ 0 0 97 -3,-2.1 3,-0.3 -4,-0.9 -1,-0.2 0.832 117.1 39.1 -76.7 -33.8 -13.2 2.3 10.1 23 23 A A T 3< S+ 0 0 12 -4,-1.6 -1,-0.2 -3,-0.2 -2,-0.2 -0.137 78.6 120.3-107.5 35.9 -14.2 2.7 6.5 24 24 A K S < S+ 0 0 149 -3,-0.7 -1,-0.2 1,-0.2 -2,-0.1 0.895 89.1 27.4 -65.4 -41.1 -17.6 1.0 6.9 25 25 A D S S+ 0 0 152 -3,-0.3 -1,-0.2 -4,-0.2 -2,-0.1 0.762 96.1 110.7 -90.7 -30.1 -19.4 4.2 5.7 26 26 A W S S- 0 0 72 -4,-0.2 -3,-0.1 1,-0.1 48,-0.0 -0.207 72.3-121.2 -49.8 126.0 -16.5 5.4 3.5 27 27 A P - 0 0 50 0, 0.0 15,-0.3 0, 0.0 3,-0.1 -0.275 4.8-131.4 -69.8 156.5 -17.6 5.1 -0.1 28 28 A K S S+ 0 0 146 1,-0.2 14,-1.4 13,-0.1 2,-0.5 0.841 96.4 37.9 -76.8 -35.0 -15.6 3.0 -2.6 29 29 A K E S-A 41 0A 101 12,-0.2 2,-0.3 33,-0.0 -1,-0.2 -0.970 72.9-170.7-123.8 120.2 -15.5 5.8 -5.2 30 30 A V E -A 40 0A 9 10,-1.4 10,-1.0 -2,-0.5 2,-0.8 -0.813 19.8-138.7-109.7 149.7 -15.1 9.5 -4.3 31 31 A K - 0 0 111 -2,-0.3 8,-0.2 8,-0.3 5,-0.1 -0.752 27.7-170.9-108.6 84.8 -15.4 12.5 -6.5 32 32 A H - 0 0 6 -2,-0.8 44,-0.1 6,-0.4 47,-0.1 -0.162 24.8-131.7 -68.4 166.9 -12.6 14.9 -5.5 33 33 A V S > S+ 0 0 77 2,-0.2 3,-1.3 46,-0.1 4,-0.2 0.892 105.1 48.4 -86.8 -46.7 -12.4 18.5 -6.7 34 34 A L T 3 S+ 0 0 97 1,-0.3 3,-0.2 2,-0.1 -1,-0.1 0.800 127.0 30.5 -64.0 -28.9 -8.7 18.5 -7.9 35 35 A H T > S+ 0 0 21 1,-0.1 3,-2.6 2,-0.1 -1,-0.3 0.021 76.0 138.2-117.6 24.6 -9.4 15.2 -9.7 36 36 A E T < + 0 0 95 -3,-1.3 -1,-0.1 1,-0.3 -2,-0.1 0.818 57.3 82.7 -37.6 -39.4 -13.0 15.8 -10.5 37 37 A E T 3 S+ 0 0 119 -4,-0.2 2,-0.3 -3,-0.2 -1,-0.3 0.842 109.6 4.4 -34.1 -49.5 -12.2 14.4 -13.9 38 38 A H S < S- 0 0 60 -3,-2.6 2,-0.7 -6,-0.0 -6,-0.4 -0.933 80.8-106.5-138.9 161.6 -12.7 10.9 -12.3 39 39 A E - 0 0 83 -2,-0.3 -8,-0.3 -8,-0.2 -3,-0.1 -0.809 37.9-128.9 -94.4 115.6 -13.7 9.5 -9.0 40 40 A L E -A 30 0A 0 -10,-1.0 -10,-1.4 -2,-0.7 2,-0.5 0.004 15.4-129.1 -53.7 165.7 -10.8 8.0 -7.0 41 41 A E E -AB 29 63A 79 22,-2.8 22,-1.4 -12,-0.2 -12,-0.2 -0.904 23.7-114.6-127.9 103.9 -11.1 4.5 -5.6 42 42 A L E - B 0 62A 17 -14,-1.4 2,-0.4 -2,-0.5 20,-0.3 -0.050 45.0-174.1 -36.6 102.1 -10.3 3.9 -1.9 43 43 A T E - B 0 61A 50 18,-2.9 18,-0.7 2,-0.0 2,-0.3 -0.905 28.7-111.0-111.7 135.5 -7.2 1.8 -2.2 44 44 A R + 0 0 104 -2,-0.4 2,-0.4 16,-0.2 16,-0.1 -0.447 46.2 168.7 -64.8 123.2 -5.4 0.2 0.7 45 45 A V - 0 0 35 -2,-0.3 14,-1.3 1,-0.1 15,-1.0 -0.996 36.0-149.7-142.5 134.3 -2.0 1.9 1.2 46 46 A Q S S- 0 0 157 -2,-0.4 13,-0.3 1,-0.3 2,-0.3 0.955 84.1 -11.1 -64.5 -52.0 0.6 1.7 4.0 47 47 A V S S+ 0 0 71 11,-0.2 -1,-0.3 12,-0.1 2,-0.3 -0.993 71.0 149.4-152.9 144.8 1.8 5.3 3.5 48 48 A Y - 0 0 18 9,-0.9 2,-0.5 -2,-0.3 9,-0.1 -0.900 42.0-100.1-158.0-175.6 1.5 8.0 1.0 49 49 A T - 0 0 113 -2,-0.3 7,-0.3 7,-0.2 21,-0.2 -0.925 30.5-135.6-126.1 107.5 1.5 11.8 0.5 50 50 A C > - 0 0 2 5,-2.7 4,-0.6 -2,-0.5 5,-0.3 -0.388 5.7-153.9 -61.6 127.3 -1.9 13.6 0.1 51 51 A D T 4 S+ 0 0 112 19,-1.1 -1,-0.1 -2,-0.1 20,-0.1 -0.075 86.8 53.4 -93.6 33.6 -1.8 16.1 -2.8 52 52 A K T 4 S+ 0 0 40 3,-0.1 -1,-0.1 -18,-0.0 19,-0.1 0.604 123.0 13.4-127.7 -59.1 -4.5 18.1 -1.2 53 53 A C T 4 S- 0 0 48 2,-0.0 -2,-0.1 29,-0.0 3,-0.1 0.388 101.0-115.1-103.5 -0.1 -3.7 19.1 2.4 54 54 A E S < S+ 0 0 170 -4,-0.6 2,-0.2 1,-0.2 -3,-0.1 0.946 73.4 124.2 65.6 49.9 -0.1 18.0 2.1 55 55 A E - 0 0 123 -5,-0.3 -5,-2.7 0, 0.0 2,-0.4 -0.614 59.9-111.9-126.7-173.3 -0.3 15.2 4.6 56 56 A E - 0 0 115 -7,-0.3 -7,-0.2 -2,-0.2 2,-0.1 -0.976 26.3-161.3-131.4 120.3 0.3 11.5 4.8 57 57 A G - 0 0 5 -2,-0.4 -9,-0.9 -9,-0.1 2,-0.3 -0.304 3.7-151.1 -91.0 178.0 -2.4 8.8 5.2 58 58 A T - 0 0 80 2,-0.2 -12,-0.2 -11,-0.2 -11,-0.2 -0.990 69.1 -2.3-153.0 142.5 -2.2 5.2 6.3 59 59 A I S S+ 0 0 34 -14,-1.3 2,-0.2 -13,-0.3 -13,-0.2 0.754 125.7 61.8 48.8 25.1 -4.1 2.0 5.7 60 60 A W + 0 0 36 -15,-1.0 2,-0.2 -16,-0.1 13,-0.2 -0.770 53.0 148.5-177.9 129.5 -6.3 4.2 3.5 61 61 A S E -B 43 0A 0 -18,-0.7 -18,-2.9 -2,-0.2 2,-1.1 -0.789 43.0-122.7-170.9 122.8 -5.8 6.3 0.4 62 62 A Y E +B 42 0A 0 9,-1.4 2,-0.3 -20,-0.3 -20,-0.3 -0.560 41.7 179.4 -72.5 99.0 -8.1 7.2 -2.6 63 63 A H E -B 41 0A 43 -22,-1.4 -22,-2.8 -2,-1.1 2,-0.5 -0.758 19.8-143.7-103.8 149.9 -6.1 6.0 -5.6 64 64 A C > - 0 0 2 -2,-0.3 4,-2.1 -24,-0.2 2,-0.4 -0.954 6.8-153.0-117.5 121.7 -7.2 6.2 -9.2 65 65 A D T 4 S+ 0 0 141 -2,-0.5 -1,-0.1 1,-0.2 -25,-0.0 -0.015 96.2 51.3 -79.4 33.2 -6.3 3.4 -11.7 66 66 A E T 4 S+ 0 0 130 -2,-0.4 -1,-0.2 3,-0.1 -26,-0.0 0.537 130.4 5.0-134.8 -37.7 -6.4 6.0 -14.4 67 67 A C T 4 S- 0 0 50 -3,-0.3 -2,-0.2 2,-0.1 -4,-0.0 0.483 93.2-118.6-127.1 -16.5 -4.2 8.9 -13.3 68 68 A D < + 0 0 101 -4,-2.1 2,-0.6 1,-0.2 -3,-0.1 0.920 49.1 169.7 75.0 46.2 -2.7 7.5 -10.1 69 69 A F - 0 0 24 -5,-0.1 2,-0.4 -34,-0.1 -1,-0.2 -0.819 15.4-162.4 -96.1 121.9 -4.2 10.2 -7.8 70 70 A D + 0 0 50 -2,-0.6 -19,-1.1 -21,-0.2 2,-0.3 -0.823 17.0 159.6-105.3 142.5 -3.9 9.6 -4.1 71 71 A L - 0 0 0 -2,-0.4 -9,-1.4 -9,-0.2 2,-0.2 -0.879 38.8 -86.5-147.9 178.3 -5.9 11.3 -1.4 72 72 A H > - 0 0 24 -2,-0.3 4,-2.8 -11,-0.2 5,-0.3 -0.639 30.3-123.3 -93.8 151.6 -7.1 11.1 2.2 73 73 A A H > S+ 0 0 9 -2,-0.2 4,-1.6 -13,-0.2 -1,-0.1 0.906 115.4 36.0 -57.2 -44.2 -10.3 9.3 3.3 74 74 A K H > S+ 0 0 151 2,-0.2 4,-2.9 1,-0.2 -1,-0.2 0.915 114.0 56.3 -75.9 -45.5 -11.6 12.4 4.9 75 75 A C H 4 S+ 0 0 6 1,-0.2 -2,-0.2 2,-0.2 -1,-0.2 0.912 111.7 43.9 -52.3 -47.3 -10.2 14.8 2.3 76 76 A A H < S+ 0 0 0 -4,-2.8 -1,-0.2 1,-0.2 -45,-0.2 0.928 111.7 53.2 -65.1 -46.7 -12.0 13.0 -0.4 77 77 A L H < S+ 0 0 70 -4,-1.6 -2,-0.2 -5,-0.3 -1,-0.2 0.944 108.0 56.7 -53.7 -53.4 -15.3 12.7 1.6 78 78 A N < - 0 0 34 -4,-2.9 3,-0.1 1,-0.1 0, 0.0 -0.210 64.6-164.0 -75.0 170.0 -15.4 16.4 2.3 79 79 A E S S+ 0 0 121 -47,-0.1 2,-0.5 1,-0.1 -46,-0.1 0.691 75.6 11.7-118.7 -64.5 -15.4 19.1 -0.4 80 80 A D S S+ 0 0 124 1,-0.1 -1,-0.1 2,-0.1 -5,-0.0 -0.802 71.8 131.8-125.5 89.7 -14.6 22.5 1.0 81 81 A T + 0 0 95 -2,-0.5 4,-0.1 4,-0.1 -1,-0.1 -0.185 46.7 91.2-129.9 40.6 -13.2 22.3 4.6 82 82 A K S S- 0 0 149 2,-0.4 3,-0.1 -3,-0.0 -1,-0.1 0.852 111.7 -31.4 -99.1 -51.7 -10.1 24.5 4.3 83 83 A E S S+ 0 0 182 1,-0.4 2,-0.1 0, 0.0 -3,-0.0 0.529 123.5 31.8-133.7 -61.1 -11.4 28.0 5.3 84 84 A S - 0 0 83 1,-0.1 -1,-0.4 3,-0.0 -2,-0.4 -0.416 63.8-164.8 -99.2 177.0 -15.0 28.6 4.3 85 85 A G - 0 0 45 -2,-0.1 2,-0.6 -4,-0.1 -4,-0.1 -0.683 42.5 -35.7-143.1-163.3 -18.0 26.2 4.0 86 86 A P + 0 0 140 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.534 68.8 150.6 -69.8 111.9 -21.5 25.8 2.6 87 87 A S - 0 0 115 -2,-0.6 2,-0.5 2,-0.0 -3,-0.0 -0.997 33.6-151.4-147.2 139.7 -23.3 29.1 2.8 88 88 A S 0 0 118 -2,-0.3 0, 0.0 0, 0.0 0, 0.0 -0.946 360.0 360.0-116.5 117.8 -26.1 30.8 0.8 89 89 A G 0 0 128 -2,-0.5 -2,-0.0 0, 0.0 0, 0.0 -0.631 360.0 360.0 133.0 360.0 -26.2 34.5 0.6