==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-JUL-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSFERASE 24-JUL-07 2V6Z . COMPND 2 MOLECULE: DNA POLYMERASE EPSILON SUBUNIT 2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.NUUTINEN,H.TOSSAVAINEN,K.FREDRIKSSON,P.PIRILA,P.PERMI, . 75 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5068.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 73.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 4.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 18.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 36 48.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 25 M M 0 0 112 0, 0.0 37,-0.0 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 108.3 3.1 -15.9 0.3 2 26 M A >> - 0 0 38 1,-0.0 4,-2.5 0, 0.0 3,-2.2 -0.917 360.0 -84.3-148.2 165.6 4.6 -13.5 -2.3 3 27 M P H 3> S+ 0 0 42 0, 0.0 4,-2.8 0, 0.0 5,-0.2 0.816 122.2 61.8 -46.6 -39.4 7.9 -11.7 -3.2 4 28 M E H 34 S+ 0 0 150 1,-0.2 4,-0.4 2,-0.2 0, 0.0 0.705 115.5 33.2 -64.0 -19.8 7.3 -8.9 -0.6 5 29 M R H <> S+ 0 0 159 -3,-2.2 4,-2.0 2,-0.1 -1,-0.2 0.759 114.5 58.8-100.8 -36.8 7.3 -11.6 2.2 6 30 M L H X S+ 0 0 5 -4,-2.5 4,-3.0 1,-0.2 5,-0.2 0.913 101.8 56.0 -55.3 -48.2 9.9 -13.9 0.5 7 31 M R H X S+ 0 0 100 -4,-2.8 4,-2.7 1,-0.2 5,-0.2 0.913 108.4 46.5 -53.0 -49.3 12.5 -11.0 0.5 8 32 M S H > S+ 0 0 74 -4,-0.4 4,-1.8 -5,-0.2 -1,-0.2 0.904 115.2 46.2 -63.8 -42.4 12.2 -10.6 4.3 9 33 M R H X S+ 0 0 96 -4,-2.0 4,-1.4 2,-0.2 -2,-0.2 0.927 115.6 46.8 -61.3 -47.0 12.5 -14.4 4.9 10 34 M A H X S+ 0 0 0 -4,-3.0 4,-1.2 2,-0.2 -2,-0.2 0.892 111.0 49.2 -69.3 -42.9 15.5 -14.7 2.5 11 35 M L H X S+ 0 0 51 -4,-2.7 4,-2.4 -5,-0.2 3,-0.4 0.923 108.0 56.6 -60.7 -43.6 17.4 -11.7 3.9 12 36 M S H X S+ 0 0 61 -4,-1.8 4,-2.5 -5,-0.2 -2,-0.2 0.864 100.2 57.9 -59.4 -36.9 17.0 -13.0 7.4 13 37 M A H X S+ 0 0 3 -4,-1.4 4,-0.5 2,-0.2 -1,-0.2 0.900 110.8 42.3 -61.1 -41.4 18.6 -16.4 6.5 14 38 M F H ><>S+ 0 0 1 -4,-1.2 5,-2.0 -3,-0.4 3,-1.0 0.918 113.2 53.8 -69.5 -41.8 21.9 -14.5 5.4 15 39 M K H ><5S+ 0 0 131 -4,-2.4 3,-1.4 1,-0.2 -2,-0.2 0.863 100.6 59.9 -60.9 -38.0 21.7 -12.2 8.5 16 40 M L H 3<5S+ 0 0 128 -4,-2.5 -1,-0.2 1,-0.3 -2,-0.2 0.741 108.6 45.6 -61.0 -24.9 21.5 -15.3 10.8 17 41 M R T <<5S- 0 0 119 -3,-1.0 -1,-0.3 -4,-0.5 -2,-0.2 0.389 123.9-104.5 -97.4 -1.4 24.9 -16.3 9.4 18 42 M G T < 5S+ 0 0 49 -3,-1.4 -3,-0.2 -4,-0.3 2,-0.1 0.405 81.8 122.6 90.6 1.1 26.4 -12.8 9.7 19 43 M L < - 0 0 17 -5,-2.0 -1,-0.3 -6,-0.1 2,-0.3 -0.400 48.1-149.1 -85.1 168.0 26.2 -12.0 5.9 20 44 M L E -a 61 0A 69 40,-2.8 42,-3.0 -2,-0.1 2,-0.4 -0.900 12.7-140.8-130.9 158.4 24.4 -9.1 4.1 21 45 M L E -a 62 0A 19 -2,-0.3 42,-0.2 40,-0.2 40,-0.1 -0.984 11.5-123.5-137.7 125.9 22.9 -9.2 0.6 22 46 M R > - 0 0 122 40,-2.6 4,-2.8 -2,-0.4 5,-0.2 -0.138 27.3-113.7 -57.1 156.6 22.8 -6.7 -2.3 23 47 M G H > S+ 0 0 45 1,-0.2 4,-1.3 2,-0.2 -1,-0.1 0.821 119.2 47.9 -66.1 -33.6 19.5 -5.4 -3.9 24 48 M E H > S+ 0 0 92 2,-0.2 4,-1.4 3,-0.1 -1,-0.2 0.804 114.7 48.3 -73.2 -28.2 20.3 -7.1 -7.3 25 49 M A H > S+ 0 0 0 37,-0.2 4,-2.1 2,-0.2 5,-0.3 0.899 108.1 50.8 -81.0 -43.1 21.2 -10.4 -5.4 26 50 M I H X S+ 0 0 18 -4,-2.8 4,-2.2 1,-0.2 -2,-0.2 0.932 112.7 49.2 -58.8 -44.9 18.1 -10.5 -3.2 27 51 M K H X S+ 0 0 117 -4,-1.3 4,-2.2 -5,-0.2 5,-0.2 0.904 107.8 55.0 -59.8 -43.9 15.9 -10.1 -6.4 28 52 M Y H X S+ 0 0 52 -4,-1.4 4,-1.8 1,-0.2 -2,-0.2 0.948 115.4 36.0 -58.3 -53.7 17.9 -12.9 -8.2 29 53 M L H X S+ 0 0 0 -4,-2.1 4,-1.7 2,-0.2 -1,-0.2 0.802 111.2 62.6 -74.4 -24.2 17.2 -15.5 -5.4 30 54 M T H < S+ 0 0 2 -4,-2.2 -1,-0.2 -5,-0.3 -2,-0.2 0.908 109.7 41.1 -63.2 -40.7 13.7 -14.1 -4.8 31 55 M E H >< S+ 0 0 133 -4,-2.2 3,-0.7 2,-0.2 -2,-0.2 0.873 114.2 52.5 -73.0 -37.1 12.8 -15.1 -8.5 32 56 M A H 3< S+ 0 0 54 -4,-1.8 -2,-0.2 1,-0.2 -1,-0.2 0.753 119.2 35.6 -68.0 -25.5 14.8 -18.4 -8.2 33 57 M L T >< S+ 0 0 3 -4,-1.7 3,-1.6 1,-0.1 -1,-0.2 0.241 82.1 117.2-110.5 7.5 12.7 -19.3 -5.0 34 58 M Q T < S+ 0 0 114 -3,-0.7 -1,-0.1 1,-0.3 -2,-0.1 0.719 86.0 31.9 -51.6 -30.0 9.4 -17.7 -6.1 35 59 M S T 3 S+ 0 0 120 -4,-0.2 -1,-0.3 -3,-0.2 2,-0.2 0.252 90.0 122.1-116.9 6.3 7.5 -21.1 -6.1 36 60 M I S < S- 0 0 60 -3,-1.6 5,-0.1 1,-0.1 -3,-0.1 -0.474 76.1 -89.3 -70.1 143.0 9.4 -22.9 -3.2 37 61 M S >> - 0 0 56 -2,-0.2 3,-1.9 1,-0.1 4,-1.1 -0.280 31.8-129.4 -52.9 129.5 7.3 -24.2 -0.2 38 62 M E T 34 S+ 0 0 121 1,-0.3 4,-0.3 2,-0.2 -1,-0.1 0.775 108.5 46.2 -57.7 -32.7 7.0 -21.5 2.6 39 63 M L T 34 S+ 0 0 146 1,-0.2 -1,-0.3 2,-0.1 4,-0.2 0.463 117.0 45.3 -88.0 -4.2 8.1 -23.9 5.4 40 64 M E T <> S+ 0 0 107 -3,-1.9 4,-2.5 2,-0.1 -2,-0.2 0.417 84.6 94.4-114.1 -6.9 11.1 -25.2 3.2 41 65 M L H X S+ 0 0 4 -4,-1.1 4,-2.3 1,-0.2 5,-0.2 0.867 88.2 46.3 -57.6 -42.0 12.3 -21.8 2.0 42 66 M E H > S+ 0 0 107 -4,-0.3 4,-1.7 2,-0.2 -1,-0.2 0.931 113.8 47.0 -68.3 -46.0 14.9 -21.5 4.8 43 67 M D H 4 S+ 0 0 99 2,-0.2 4,-0.4 -4,-0.2 -2,-0.2 0.845 115.4 47.5 -65.4 -34.5 16.2 -25.1 4.3 44 68 M K H >X S+ 0 0 43 -4,-2.5 3,-1.6 2,-0.2 4,-0.6 0.956 111.4 47.9 -68.8 -53.9 16.4 -24.5 0.5 45 69 M L H >X S+ 0 0 1 -4,-2.3 4,-2.1 1,-0.3 3,-0.9 0.798 98.9 71.3 -61.0 -26.2 18.2 -21.1 0.7 46 70 M E H 3X S+ 0 0 59 -4,-1.7 4,-2.3 1,-0.3 -1,-0.3 0.810 91.5 58.1 -62.4 -26.8 20.7 -22.8 3.3 47 71 M K H <> S+ 0 0 108 -3,-1.6 4,-0.7 -4,-0.4 -1,-0.3 0.808 105.1 50.2 -72.0 -29.4 22.2 -24.7 0.3 48 72 M I H XX S+ 0 0 0 -3,-0.9 4,-2.5 -4,-0.6 3,-1.1 0.958 110.7 48.9 -69.1 -50.8 22.9 -21.4 -1.4 49 73 M I H 3X S+ 0 0 6 -4,-2.1 4,-2.5 1,-0.3 -2,-0.2 0.908 106.8 56.0 -57.2 -43.5 24.6 -20.1 1.8 50 74 M N H 3< S+ 0 0 102 -4,-2.3 -1,-0.3 1,-0.2 -2,-0.2 0.754 110.8 45.4 -60.6 -25.2 26.7 -23.4 2.1 51 75 M A H X< S+ 0 0 2 -3,-1.1 3,-1.8 -4,-0.7 4,-0.3 0.883 109.3 53.3 -83.7 -40.8 28.0 -22.7 -1.5 52 76 M V H >< S+ 0 0 2 -4,-2.5 3,-1.6 1,-0.3 -2,-0.2 0.902 100.6 63.7 -56.8 -40.1 28.7 -18.9 -0.7 53 77 M E T 3< S+ 0 0 135 -4,-2.5 -1,-0.3 1,-0.3 -2,-0.2 0.533 109.5 39.0 -63.0 -7.6 30.8 -20.2 2.3 54 78 M K T < S+ 0 0 144 -3,-1.8 -1,-0.3 2,-0.1 -2,-0.2 0.220 99.1 94.3-126.0 10.6 33.2 -22.0 -0.3 55 79 M Q S < S- 0 0 42 -3,-1.6 2,-0.3 -4,-0.3 11,-0.0 -0.702 86.6 -92.1 -99.2 154.6 33.3 -19.2 -3.0 56 80 M P + 0 0 126 0, 0.0 2,-0.3 0, 0.0 -2,-0.1 -0.522 62.1 143.0 -71.3 126.1 36.0 -16.4 -3.3 57 81 M L - 0 0 89 -2,-0.3 3,-0.1 5,-0.0 5,-0.1 -0.957 40.9-159.5-156.0 167.6 35.0 -13.2 -1.5 58 82 M S S S+ 0 0 129 -2,-0.3 2,-0.3 3,-0.2 -1,-0.0 0.230 75.9 40.1-138.7 8.0 36.4 -10.2 0.5 59 83 M S S S- 0 0 66 2,-0.1 -1,-0.1 1,-0.0 -40,-0.0 -0.971 77.5-115.9-153.3 159.7 33.4 -8.8 2.4 60 84 M N S S+ 0 0 75 -2,-0.3 -40,-2.8 -41,-0.1 2,-0.9 0.517 89.9 101.1 -77.8 -5.2 30.2 -10.0 4.2 61 85 M M E -a 20 0A 80 -42,-0.2 2,-0.2 -40,-0.1 -40,-0.2 -0.748 65.4-155.0 -83.1 104.2 28.2 -8.2 1.5 62 86 M I E -a 21 0A 0 -42,-3.0 -40,-2.6 -2,-0.9 2,-0.2 -0.582 11.4-160.6 -80.3 143.0 27.0 -10.9 -1.0 63 87 M E >> - 0 0 106 -2,-0.2 4,-2.3 -42,-0.2 3,-0.8 -0.768 33.2 -99.4-126.1 165.9 26.3 -9.9 -4.7 64 88 M R H 3> S+ 0 0 122 1,-0.2 4,-3.1 -2,-0.2 5,-0.2 0.895 120.5 56.5 -54.9 -44.7 24.4 -11.2 -7.7 65 89 M S H 34 S+ 0 0 83 1,-0.2 4,-0.4 2,-0.2 -1,-0.2 0.833 110.9 45.2 -57.5 -33.8 27.6 -12.6 -9.3 66 90 M V H X> S+ 0 0 20 -3,-0.8 4,-2.0 2,-0.2 3,-0.8 0.933 115.9 45.0 -73.8 -46.7 28.2 -14.7 -6.1 67 91 M V H 3X S+ 0 0 0 -4,-2.3 4,-2.9 1,-0.2 5,-0.2 0.880 103.4 64.2 -65.7 -38.4 24.5 -15.9 -5.9 68 92 M E H 3< S+ 0 0 77 -4,-3.1 -1,-0.2 1,-0.2 -2,-0.2 0.704 114.4 33.9 -60.1 -21.5 24.3 -16.7 -9.7 69 93 M A H <> S+ 0 0 49 -3,-0.8 4,-0.5 -4,-0.4 3,-0.4 0.716 114.8 56.8-101.9 -32.8 27.0 -19.4 -9.0 70 94 M A H >X S+ 0 0 0 -4,-2.0 4,-1.1 1,-0.2 3,-0.8 0.859 99.8 60.0 -67.5 -35.9 25.8 -20.4 -5.4 71 95 M V H 3X S+ 0 0 20 -4,-2.9 4,-1.4 1,-0.2 -1,-0.2 0.822 92.5 68.5 -59.6 -30.9 22.3 -21.2 -6.7 72 96 M Q H 34 S+ 0 0 120 -3,-0.4 -1,-0.2 1,-0.2 -2,-0.2 0.816 102.3 44.1 -62.9 -33.4 23.8 -23.9 -9.0 73 97 M E H << S+ 0 0 120 -3,-0.8 -1,-0.2 -4,-0.5 -2,-0.2 0.801 113.2 51.6 -78.4 -32.4 24.8 -26.0 -5.9 74 98 M S H < 0 0 4 -4,-1.1 -2,-0.2 1,-0.2 -1,-0.2 0.684 360.0 360.0 -73.5 -22.3 21.3 -25.5 -4.3 75 99 M S < 0 0 142 -4,-1.4 -1,-0.2 -28,-0.1 -2,-0.1 0.921 360.0 360.0 -54.4 360.0 19.5 -26.6 -7.5