==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION/RNA 03-MAR-04 1VBX . COMPND 2 MOLECULE: HEPATITIS DELTA VIRUS RIBOZYME; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.KE,K.ZHOU,F.DING,J.H.D.CATE,J.A.DOUDNA . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5944.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 65.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 21.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 24.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 A P 0 0 178 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 105.2 41.1 29.1 77.3 2 5 A E - 0 0 91 1,-0.1 2,-0.3 80,-0.0 80,-0.0 0.232 360.0-107.8 -50.4 179.6 40.0 30.1 80.8 3 6 A T - 0 0 40 3,-0.0 -1,-0.1 80,-0.0 82,-0.1 -0.824 23.2-113.3-116.7 157.4 42.4 31.4 83.5 4 7 A R - 0 0 193 -2,-0.3 -1,-0.0 81,-0.2 0, 0.0 -0.547 49.4 -79.1 -86.9 152.5 43.8 29.9 86.7 5 8 A P + 0 0 78 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.129 58.4 179.6 -49.2 142.0 42.9 31.2 90.1 6 9 A N - 0 0 11 53,-0.2 50,-0.1 2,-0.1 56,-0.1 -0.939 44.9-115.7-146.4 164.9 44.8 34.3 91.2 7 10 A H S S+ 0 0 40 -2,-0.3 49,-1.9 55,-0.1 2,-0.4 0.741 103.4 59.6 -70.6 -23.0 45.2 36.9 94.0 8 11 A T E S-A 55 0A 0 47,-0.2 76,-2.2 76,-0.1 2,-0.4 -0.852 73.1-149.4-111.6 141.8 43.9 39.5 91.6 9 12 A I E -AB 54 83A 0 45,-2.4 45,-2.1 -2,-0.4 2,-0.6 -0.900 12.0-141.7-109.6 138.8 40.5 39.6 89.8 10 13 A Y E -AB 53 82A 44 72,-3.0 72,-1.8 -2,-0.4 2,-0.4 -0.904 20.2-171.0-102.6 120.7 40.2 41.2 86.4 11 14 A I E +AB 52 81A 0 41,-2.8 41,-1.7 -2,-0.6 2,-0.3 -0.898 11.5 160.6-112.9 139.8 37.0 43.1 85.9 12 15 A N E +AB 51 80A 33 68,-2.3 68,-2.0 -2,-0.4 39,-0.2 -0.864 44.9 67.8-145.4-177.7 35.8 44.6 82.7 13 16 A N S S+ 0 0 46 37,-0.5 2,-0.2 -2,-0.3 38,-0.1 0.828 72.3 157.5 69.7 33.4 32.6 45.9 80.9 14 17 A L - 0 0 2 36,-2.0 2,-0.5 -3,-0.1 -1,-0.2 -0.598 56.6 -89.3 -88.8 151.6 32.8 48.8 83.4 15 18 A N > - 0 0 35 59,-0.3 3,-1.3 -2,-0.2 35,-0.2 -0.424 37.1-160.2 -62.6 112.7 31.1 52.1 82.7 16 19 A E T 3 S+ 0 0 98 -2,-0.5 -1,-0.2 1,-0.3 34,-0.1 0.675 80.3 74.4 -71.4 -14.0 33.9 54.0 81.0 17 20 A K T 3 S+ 0 0 81 2,-0.1 2,-0.5 33,-0.0 -1,-0.3 0.431 76.3 100.6 -80.1 5.4 32.3 57.4 81.7 18 21 A I S < S- 0 0 19 -3,-1.3 5,-0.0 1,-0.0 -4,-0.0 -0.772 77.8-117.2 -95.6 128.3 33.4 57.2 85.4 19 22 A K > - 0 0 146 -2,-0.5 4,-2.6 1,-0.1 5,-0.2 -0.265 25.9-116.7 -60.1 148.0 36.5 59.1 86.6 20 23 A K H > S+ 0 0 102 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.880 110.5 50.3 -51.0 -51.3 39.3 56.9 87.9 21 24 A D H > S+ 0 0 100 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.921 113.8 45.6 -60.0 -42.1 39.3 58.1 91.5 22 25 A E H > S+ 0 0 88 2,-0.2 4,-3.1 1,-0.2 5,-0.3 0.933 111.5 52.1 -67.9 -44.4 35.6 57.6 91.9 23 26 A L H X S+ 0 0 7 -4,-2.6 4,-2.7 1,-0.2 5,-0.2 0.940 107.8 50.7 -57.5 -50.5 35.7 54.2 90.3 24 27 A K H X S+ 0 0 68 -4,-2.7 4,-1.8 1,-0.2 -1,-0.2 0.927 114.0 46.7 -54.8 -42.0 38.4 52.9 92.5 25 28 A K H >X S+ 0 0 125 -4,-1.7 4,-2.2 -5,-0.2 3,-0.5 0.978 112.3 46.7 -63.8 -58.3 36.4 54.1 95.5 26 29 A S H 3X S+ 0 0 33 -4,-3.1 4,-1.3 1,-0.2 -1,-0.2 0.848 111.3 54.8 -51.8 -37.0 33.1 52.7 94.4 27 30 A L H 3X S+ 0 0 0 -4,-2.7 4,-1.1 -5,-0.3 -1,-0.2 0.874 107.9 47.6 -66.1 -38.8 34.9 49.4 93.7 28 31 A H H < S+ 0 0 0 -4,-1.1 3,-2.1 -3,-0.3 4,-0.3 0.692 85.6 82.1-108.9 -20.7 34.5 44.5 97.1 32 35 A S G >< S+ 0 0 52 -4,-2.4 3,-0.8 1,-0.3 -3,-0.1 0.666 80.5 70.1 -60.1 -16.6 36.1 45.0 100.5 33 36 A R G 3 S+ 0 0 175 1,-0.2 -1,-0.3 -5,-0.2 3,-0.1 0.627 88.6 63.5 -76.7 -12.2 33.7 42.5 102.2 34 37 A F G < S- 0 0 19 -3,-2.1 2,-0.2 1,-0.4 -1,-0.2 0.630 122.8 -64.1 -86.4 -11.2 35.4 39.6 100.4 35 38 A G S < S- 0 0 21 -3,-0.8 -1,-0.4 -4,-0.3 -4,-0.0 -0.800 77.1 -35.4 148.9 171.1 38.7 40.2 102.2 36 39 A Q - 0 0 118 -2,-0.2 21,-2.3 -3,-0.1 2,-0.5 -0.267 54.5-146.2 -56.3 140.3 41.5 42.7 102.6 37 40 A I E -C 56 0A 23 19,-0.2 19,-0.3 1,-0.2 3,-0.1 -0.952 12.6-167.6-114.6 119.1 42.3 44.5 99.3 38 41 A L E - 0 0 56 17,-2.6 2,-0.3 -2,-0.5 18,-0.2 0.912 67.4 -35.8 -72.2 -38.7 45.9 45.4 98.7 39 42 A D E -C 55 0A 69 16,-1.3 16,-3.2 2,-0.0 2,-0.4 -0.992 43.9-131.3-173.5 168.4 45.0 47.7 95.8 40 43 A I E -C 54 0A 8 -2,-0.3 2,-0.5 14,-0.2 14,-0.2 -0.960 20.3-158.2-137.6 117.4 42.9 48.6 92.8 41 44 A L E +C 53 0A 67 12,-2.3 12,-2.3 -2,-0.4 2,-0.4 -0.839 16.2 169.6-102.1 132.6 44.4 49.6 89.5 42 45 A V - 0 0 13 -2,-0.5 2,-0.3 10,-0.2 10,-0.1 -0.998 8.3-176.8-142.0 134.9 42.4 51.5 87.0 43 46 A S - 0 0 52 5,-0.6 8,-0.4 -2,-0.4 7,-0.2 -0.977 17.6-158.4-131.9 144.8 43.5 53.2 83.8 44 47 A R + 0 0 112 -2,-0.3 5,-0.2 5,-0.2 -1,-0.0 0.321 52.0 124.9-105.8 9.0 41.4 55.3 81.4 45 48 A S S > S- 0 0 56 1,-0.1 4,-1.8 3,-0.1 -2,-0.1 0.003 79.6 -97.3 -62.4 170.8 43.7 54.9 78.4 46 49 A L T 4 S+ 0 0 148 1,-0.2 -1,-0.1 2,-0.2 -3,-0.0 0.867 124.4 37.0 -58.7 -37.8 42.4 53.6 75.1 47 50 A K T 4 S+ 0 0 167 1,-0.1 -1,-0.2 3,-0.0 -4,-0.0 0.804 123.6 39.4 -86.8 -29.6 43.7 50.1 75.9 48 51 A M T >4 S+ 0 0 55 3,-0.0 3,-1.0 2,-0.0 -5,-0.6 0.472 82.7 115.2-103.6 -1.4 42.9 50.0 79.6 49 52 A R T 3< S+ 0 0 98 -4,-1.8 -5,-0.2 1,-0.2 3,-0.1 -0.281 72.6 28.5 -68.2 155.0 39.6 51.7 80.0 50 53 A G T 3 S+ 0 0 11 1,-0.3 -36,-2.0 -35,-0.2 -37,-0.5 0.527 107.9 88.3 75.8 6.5 36.5 49.8 81.2 51 54 A Q E < -A 12 0A 32 -3,-1.0 -8,-0.3 -8,-0.4 -1,-0.3 -0.758 50.3-177.7-128.6 173.5 38.7 47.4 83.1 52 55 A A E -A 11 0A 1 -41,-1.7 -41,-2.8 -2,-0.2 2,-0.6 -0.943 21.3-136.7-169.3 149.7 40.2 47.2 86.6 53 56 A F E -AC 10 41A 60 -12,-2.3 -12,-2.3 -2,-0.3 2,-0.7 -0.960 15.0-164.8-117.0 114.7 42.4 44.9 88.6 54 57 A V E -AC 9 40A 0 -45,-2.1 -45,-2.4 -2,-0.6 2,-0.9 -0.893 11.1-153.8 -98.6 117.9 41.3 44.4 92.2 55 58 A I E -AC 8 39A 0 -16,-3.2 -17,-2.6 -2,-0.7 -16,-1.3 -0.793 10.8-165.1-100.9 100.6 44.2 42.9 94.1 56 59 A F E - C 0 37A 0 -49,-1.9 -19,-0.2 -2,-0.9 3,-0.1 -0.463 22.2-135.5 -80.4 146.8 43.1 40.8 97.1 57 60 A K S S+ 0 0 76 -21,-2.3 2,-0.5 1,-0.2 -1,-0.1 0.953 92.2 38.4 -67.3 -49.2 45.4 39.7 99.9 58 61 A E S >> S- 0 0 122 -22,-0.4 3,-1.5 1,-0.1 4,-1.2 -0.903 76.3-135.7-111.7 129.6 44.1 36.0 100.0 59 62 A V H 3> S+ 0 0 49 -2,-0.5 4,-2.8 1,-0.3 -53,-0.2 0.791 104.7 64.6 -47.5 -34.3 43.2 34.0 96.9 60 63 A S H 3> S+ 0 0 67 1,-0.2 4,-3.4 2,-0.2 -1,-0.3 0.945 100.7 52.3 -57.2 -42.8 40.1 32.8 98.6 61 64 A S H <> S+ 0 0 9 -3,-1.5 4,-2.9 2,-0.2 5,-0.3 0.920 108.9 47.8 -57.6 -48.9 38.8 36.4 98.6 62 65 A A H X S+ 0 0 0 -4,-1.2 4,-2.4 1,-0.2 -1,-0.2 0.932 113.4 50.4 -58.6 -43.8 39.4 36.8 94.9 63 66 A T H X S+ 0 0 22 -4,-2.8 4,-2.5 2,-0.2 -2,-0.2 0.952 113.5 43.3 -58.9 -52.8 37.6 33.5 94.4 64 67 A N H X S+ 0 0 87 -4,-3.4 4,-3.5 1,-0.2 5,-0.3 0.972 114.1 49.7 -55.3 -59.6 34.6 34.5 96.5 65 68 A A H X S+ 0 0 0 -4,-2.9 4,-2.0 1,-0.2 -1,-0.2 0.857 110.3 54.1 -49.3 -39.2 34.4 37.9 95.0 66 69 A L H X S+ 0 0 22 -4,-2.4 4,-1.1 -5,-0.3 -1,-0.2 0.992 114.7 36.5 -62.2 -59.0 34.6 36.3 91.6 67 70 A R H < S+ 0 0 195 -4,-2.5 3,-0.2 1,-0.2 -2,-0.2 0.889 120.0 48.9 -61.8 -40.9 31.7 33.9 92.1 68 71 A S H < S+ 0 0 63 -4,-3.5 -1,-0.2 -5,-0.2 -2,-0.2 0.830 117.7 35.0 -70.5 -34.2 29.6 36.4 94.2 69 72 A M H >< S+ 0 0 7 -4,-2.0 3,-2.6 -5,-0.3 -1,-0.2 0.437 75.5 129.6-105.0 0.4 29.7 39.5 92.0 70 73 A Q T 3< S+ 0 0 94 -4,-1.1 10,-0.2 1,-0.3 9,-0.1 -0.334 85.8 11.4 -53.7 130.9 29.7 38.1 88.5 71 74 A G T 3 S+ 0 0 38 8,-2.1 -1,-0.3 1,-0.2 9,-0.1 0.462 88.0 159.0 78.2 0.8 27.0 40.0 86.6 72 75 A F < - 0 0 81 -3,-2.6 7,-2.9 7,-0.2 2,-0.4 -0.365 45.9-119.1 -63.1 129.5 26.5 42.6 89.3 73 76 A P E +D 78 0B 90 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.576 42.5 171.0 -69.8 122.6 24.9 45.8 87.9 74 77 A F E > -D 77 0B 17 3,-3.0 3,-1.7 -2,-0.4 -59,-0.3 -0.979 67.3 -12.3-140.4 121.1 27.4 48.6 88.6 75 78 A Y T 3 S- 0 0 52 -2,-0.4 -1,-0.1 1,-0.3 -57,-0.0 0.933 132.2 -52.1 53.0 46.5 26.9 52.1 87.2 76 79 A D T 3 S+ 0 0 159 1,-0.1 -1,-0.3 -61,-0.0 -62,-0.0 0.506 122.3 96.4 69.4 6.9 24.2 50.7 84.9 77 80 A K E < S-D 74 0B 59 -3,-1.7 -3,-3.0 -5,-0.1 2,-0.6 -0.970 78.8-110.2-133.8 146.5 26.3 47.8 83.5 78 81 A P E -D 73 0B 74 0, 0.0 -6,-0.2 0, 0.0 2,-0.1 -0.568 36.6-132.4 -73.3 114.4 26.8 44.1 84.3 79 82 A M - 0 0 2 -7,-2.9 -8,-2.1 -2,-0.6 2,-0.5 -0.430 16.1-152.4 -64.8 137.1 30.3 43.7 85.8 80 83 A R E -B 12 0A 120 -68,-2.0 -68,-2.3 -10,-0.2 2,-0.3 -0.977 16.8-165.9-117.6 121.1 32.2 40.8 84.1 81 84 A I E +B 11 0A 4 -2,-0.5 2,-0.3 -70,-0.2 -70,-0.2 -0.838 17.9 150.9-117.4 149.1 34.8 39.2 86.3 82 85 A Q E -B 10 0A 90 -72,-1.8 -72,-3.0 -2,-0.3 2,-0.3 -0.896 47.5 -86.7-152.4 178.1 37.8 36.8 85.9 83 86 A Y E -B 9 0A 29 -74,-0.3 -74,-0.2 -2,-0.3 2,-0.2 -0.679 53.2-102.4 -91.2 150.0 41.1 36.0 87.5 84 87 A A - 0 0 5 -76,-2.2 -76,-0.1 -2,-0.3 -80,-0.1 -0.505 24.3-125.6 -71.8 141.2 44.0 38.0 86.2 85 88 A K S S+ 0 0 192 -2,-0.2 2,-0.2 -82,-0.1 -81,-0.2 0.891 89.8 12.8 -52.0 -44.5 46.2 36.2 83.7 86 89 A T S S- 0 0 103 -80,-0.0 2,-0.2 1,-0.0 -78,-0.1 -0.785 94.6 -79.1-129.0 174.9 49.4 36.8 85.7 87 90 A D - 0 0 76 -2,-0.2 2,-0.1 1,-0.1 -2,-0.0 -0.500 42.7-119.2 -79.4 142.6 50.3 38.0 89.2 88 91 A S >> - 0 0 15 -2,-0.2 4,-2.0 1,-0.1 3,-1.2 -0.483 26.5-115.2 -76.0 150.8 50.3 41.7 90.0 89 92 A D H 3> S+ 0 0 114 1,-0.3 4,-2.8 2,-0.2 5,-0.1 0.833 115.4 61.3 -56.5 -36.2 53.6 43.1 91.1 90 93 A I H 34 S+ 0 0 65 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.840 108.7 45.0 -59.2 -33.9 52.4 43.9 94.6 91 94 A I H X> S+ 0 0 5 -3,-1.2 3,-1.8 2,-0.1 4,-1.0 0.907 109.3 53.7 -77.8 -43.0 51.8 40.2 94.9 92 95 A A H 3< S+ 0 0 58 -4,-2.0 -2,-0.2 1,-0.3 -3,-0.1 0.930 95.4 68.1 -57.0 -46.5 55.2 39.2 93.4 93 96 A K T 3< S+ 0 0 173 -4,-2.8 -1,-0.3 2,-0.2 -2,-0.1 0.512 120.2 19.5 -54.4 0.4 57.0 41.4 95.9 94 97 A M T <4 0 0 138 -3,-1.8 -2,-0.2 -5,-0.1 -3,-0.1 0.385 360.0 360.0-127.4 -89.0 55.7 38.8 98.4 95 98 A K < 0 0 96 -4,-1.0 -2,-0.2 0, 0.0 -3,-0.1 -0.625 360.0 360.0 -94.2 360.0 54.6 35.4 97.2