==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION/RNA 03-MAR-04 1VBY . COMPND 2 MOLECULE: HEPATITIS DELTA VIRUS RIBOZYME; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.KE,K.ZHOU,F.DING,J.H.D.CATE,J.A.DOUDNA . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5863.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 67.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 22.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 24.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 A P 0 0 180 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 99.9 -12.9 -2.0 14.5 2 5 A E - 0 0 88 1,-0.1 2,-0.3 80,-0.0 80,-0.0 0.115 360.0-115.8 -52.7 173.2 -14.0 -1.3 18.1 3 6 A T - 0 0 32 3,-0.0 -1,-0.1 1,-0.0 3,-0.1 -0.851 20.2-113.1-117.6 155.2 -11.7 0.0 20.8 4 7 A R - 0 0 184 -2,-0.3 -1,-0.0 81,-0.2 0, 0.0 -0.529 49.5 -78.5 -85.6 150.7 -10.4 -1.5 24.0 5 8 A P + 0 0 75 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 -0.065 57.6 178.7 -46.2 145.1 -11.4 -0.1 27.4 6 9 A N - 0 0 9 53,-0.2 50,-0.1 -3,-0.1 79,-0.1 -0.978 45.2-117.8-151.6 158.1 -9.5 3.0 28.5 7 10 A H S S+ 0 0 37 -2,-0.3 49,-2.1 55,-0.1 2,-0.4 0.799 102.7 64.8 -64.0 -31.0 -9.2 5.6 31.3 8 11 A T E S-A 55 0A 0 47,-0.2 76,-2.4 76,-0.2 2,-0.5 -0.819 71.0-154.6-101.8 135.0 -10.3 8.2 28.7 9 12 A I E -AB 54 83A 0 45,-2.7 45,-2.2 -2,-0.4 2,-0.5 -0.886 10.8-147.2-106.4 136.0 -13.6 8.3 27.0 10 13 A Y E -AB 53 82A 45 72,-2.4 72,-2.6 -2,-0.5 2,-0.4 -0.908 17.4-170.1-102.1 128.9 -13.7 10.0 23.6 11 14 A I E +AB 52 81A 0 41,-3.5 41,-2.5 -2,-0.5 2,-0.2 -0.964 10.6 164.4-122.3 137.7 -17.0 11.8 22.9 12 15 A N E +AB 51 80A 30 68,-2.3 68,-1.8 -2,-0.4 39,-0.2 -0.778 47.7 67.1-140.4-174.3 -18.1 13.3 19.6 13 16 A N S S+ 0 0 39 37,-0.7 2,-0.2 -2,-0.2 38,-0.2 0.777 72.0 156.6 68.7 25.5 -21.2 14.5 17.8 14 17 A L - 0 0 3 36,-2.1 -1,-0.2 -3,-0.2 2,-0.1 -0.572 57.4 -87.3 -82.7 147.4 -21.1 17.4 20.4 15 18 A N > - 0 0 37 59,-0.4 3,-0.9 -2,-0.2 35,-0.2 -0.339 36.5-155.7 -56.0 122.1 -22.8 20.7 19.5 16 19 A E T 3 S+ 0 0 98 1,-0.2 -1,-0.2 -2,-0.1 34,-0.1 0.622 83.0 72.6 -78.6 -11.1 -20.1 22.7 17.8 17 20 A K T 3 S+ 0 0 77 2,-0.1 2,-0.6 33,-0.0 -1,-0.2 0.393 75.1 102.4 -84.4 7.0 -21.7 26.0 18.6 18 21 A I S < S- 0 0 23 -3,-0.9 32,-0.1 1,-0.0 -4,-0.0 -0.794 76.6-118.9 -97.0 126.6 -20.6 25.8 22.3 19 22 A K > - 0 0 141 -2,-0.6 4,-2.5 1,-0.1 3,-0.4 -0.216 26.2-114.0 -56.9 144.6 -17.6 27.7 23.4 20 23 A K H > S+ 0 0 104 1,-0.2 4,-2.0 2,-0.2 5,-0.2 0.855 111.0 53.1 -48.2 -46.6 -14.7 25.7 24.8 21 24 A D H > S+ 0 0 102 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.888 112.9 42.2 -61.9 -43.1 -14.9 26.9 28.3 22 25 A E H > S+ 0 0 90 -3,-0.4 4,-3.4 2,-0.2 5,-0.4 0.935 108.8 58.3 -68.7 -50.5 -18.6 26.1 28.8 23 26 A L H X S+ 0 0 6 -4,-2.5 4,-2.2 1,-0.2 5,-0.2 0.892 109.5 45.0 -48.6 -47.3 -18.4 22.7 27.0 24 27 A K H X S+ 0 0 63 -4,-2.0 4,-2.4 -5,-0.2 -1,-0.2 0.932 114.5 49.8 -63.8 -43.4 -15.8 21.5 29.5 25 28 A K H X S+ 0 0 131 -4,-1.7 4,-1.8 -5,-0.2 -2,-0.2 0.962 114.4 43.1 -56.8 -56.8 -17.9 23.0 32.4 26 29 A S H X S+ 0 0 29 -4,-3.4 4,-1.6 1,-0.2 -1,-0.2 0.815 112.0 53.9 -60.0 -37.3 -21.1 21.3 31.2 27 30 A L H X S+ 0 0 0 -4,-2.2 4,-1.6 -5,-0.4 -1,-0.2 0.930 108.3 49.6 -66.0 -42.8 -19.4 18.0 30.5 28 31 A H H X S+ 0 0 91 -4,-2.4 4,-2.2 1,-0.2 -2,-0.2 0.898 104.3 62.2 -61.0 -37.6 -18.0 18.0 33.9 29 32 A A H < S+ 0 0 70 -4,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.910 113.7 31.4 -55.8 -44.3 -21.5 18.7 35.2 30 33 A I H < S+ 0 0 36 -4,-1.6 -1,-0.2 -3,-0.2 -2,-0.2 0.604 123.7 45.5 -94.3 -7.9 -22.9 15.5 33.8 31 34 A F H >< S+ 0 0 0 -4,-1.6 3,-1.8 -3,-0.2 4,-0.2 0.618 84.0 84.6-109.1 -15.9 -19.8 13.2 34.1 32 35 A S G >< S+ 0 0 55 -4,-2.2 3,-0.9 1,-0.3 -1,-0.1 0.669 81.1 68.9 -60.5 -19.6 -18.4 13.8 37.6 33 36 A R G 3 S+ 0 0 173 1,-0.2 -1,-0.3 -4,-0.2 3,-0.1 0.632 88.9 63.5 -75.6 -14.6 -20.7 11.3 39.1 34 37 A F G < S- 0 0 18 -3,-1.8 -1,-0.2 1,-0.3 2,-0.2 0.514 121.7 -64.5 -87.2 -6.1 -19.0 8.4 37.4 35 38 A G S < S- 0 0 22 -3,-0.9 -1,-0.3 -4,-0.2 2,-0.1 -0.775 76.6 -35.0 144.3 172.6 -15.7 9.0 39.2 36 39 A Q - 0 0 108 -2,-0.2 21,-2.7 -3,-0.1 2,-0.5 -0.403 55.4-146.9 -62.3 132.1 -12.8 11.5 39.7 37 40 A I E -C 56 0A 26 19,-0.2 19,-0.2 1,-0.1 3,-0.1 -0.890 13.0-167.5-106.0 127.1 -12.0 13.3 36.4 38 41 A L E - 0 0 60 17,-3.1 2,-0.3 -2,-0.5 18,-0.2 0.818 67.1 -34.4 -82.4 -29.7 -8.4 14.2 35.8 39 42 A D E -C 55 0A 64 16,-1.0 16,-2.6 2,-0.0 2,-0.4 -0.973 45.3-133.3-178.4 166.3 -9.1 16.5 32.9 40 43 A I E -C 54 0A 7 -2,-0.3 2,-0.5 14,-0.2 14,-0.2 -0.976 20.6-155.2-139.1 123.3 -11.3 17.3 29.9 41 44 A L E +C 53 0A 66 12,-1.7 12,-2.0 -2,-0.4 2,-0.3 -0.890 18.0 168.7-107.0 127.1 -9.8 18.2 26.6 42 45 A V E -C 52 0A 13 -2,-0.5 2,-0.4 10,-0.2 10,-0.1 -0.993 7.9-179.9-136.3 141.3 -11.7 20.2 24.1 43 46 A S - 0 0 52 5,-0.5 8,-0.3 8,-0.5 -2,-0.0 -0.993 19.5-158.0-143.2 133.0 -10.5 22.0 20.9 44 47 A R + 0 0 104 -2,-0.4 5,-0.2 5,-0.1 -1,-0.0 0.260 51.4 129.6 -95.4 13.8 -12.6 24.0 18.5 45 48 A S S > S- 0 0 55 1,-0.1 4,-1.7 3,-0.1 3,-0.4 -0.226 77.8-100.1 -65.0 159.6 -10.2 23.5 15.6 46 49 A L T 4 S+ 0 0 147 1,-0.2 -1,-0.1 2,-0.2 3,-0.1 0.836 123.4 40.7 -47.1 -41.3 -11.5 22.3 12.3 47 50 A K T 4 S+ 0 0 168 1,-0.2 -1,-0.2 3,-0.0 -3,-0.0 0.765 121.5 38.1 -83.2 -28.3 -10.3 18.8 13.0 48 51 A M T >4 S+ 0 0 47 -3,-0.4 3,-0.9 3,-0.0 -5,-0.5 0.398 83.1 119.3-108.4 5.4 -11.2 18.5 16.7 49 52 A R T 3< S+ 0 0 101 -4,-1.7 -36,-0.2 1,-0.2 -5,-0.1 -0.252 71.6 27.8 -68.8 157.3 -14.5 20.3 16.9 50 53 A G T 3 S+ 0 0 11 1,-0.2 -36,-2.1 -35,-0.2 -37,-0.7 0.686 109.6 89.6 66.4 19.0 -17.6 18.5 18.1 51 54 A Q E < -A 12 0A 33 -3,-0.9 -8,-0.5 -8,-0.3 2,-0.3 -0.940 49.2-179.1-142.0 164.2 -15.5 16.1 20.1 52 55 A A E -AC 11 42A 1 -41,-2.5 -41,-3.5 -2,-0.3 2,-0.5 -0.984 21.9-136.8-161.2 156.8 -14.0 15.8 23.6 53 56 A F E -AC 10 41A 60 -12,-2.0 -12,-1.7 -2,-0.3 2,-0.7 -0.906 15.4-164.1-121.0 101.3 -11.8 13.6 25.7 54 57 A V E -AC 9 40A 0 -45,-2.2 -45,-2.7 -2,-0.5 2,-0.8 -0.767 11.3-153.2 -88.0 120.0 -13.0 13.0 29.2 55 58 A I E -AC 8 39A 0 -16,-2.6 -17,-3.1 -2,-0.7 -16,-1.0 -0.787 10.1-165.4 -97.9 101.9 -10.1 11.6 31.2 56 59 A F E - C 0 37A 0 -49,-2.1 -19,-0.2 -2,-0.8 3,-0.1 -0.569 22.0-137.0 -84.0 144.5 -11.2 9.4 34.2 57 60 A K S S+ 0 0 98 -21,-2.7 2,-0.5 -2,-0.2 -1,-0.1 0.895 93.0 40.2 -66.9 -39.1 -8.8 8.4 37.0 58 61 A E S >> S- 0 0 116 -22,-0.4 4,-1.4 1,-0.1 3,-1.4 -0.943 76.0-137.6-118.5 129.9 -10.2 4.9 37.1 59 62 A V H 3> S+ 0 0 51 -2,-0.5 4,-2.7 1,-0.3 -53,-0.2 0.807 103.3 64.1 -48.1 -36.0 -11.1 2.8 34.0 60 63 A S H 3> S+ 0 0 65 1,-0.2 4,-2.3 2,-0.2 -1,-0.3 0.911 101.6 50.6 -56.9 -42.6 -14.3 1.6 35.8 61 64 A S H <> S+ 0 0 10 -3,-1.4 4,-3.0 2,-0.2 5,-0.3 0.949 108.8 51.2 -59.6 -49.8 -15.6 5.1 35.8 62 65 A A H X S+ 0 0 0 -4,-1.4 4,-1.9 1,-0.2 -2,-0.2 0.921 110.2 50.0 -53.6 -47.0 -14.9 5.5 32.1 63 66 A T H X S+ 0 0 15 -4,-2.7 4,-2.5 2,-0.2 -1,-0.2 0.894 112.2 47.0 -59.8 -42.7 -16.8 2.3 31.4 64 67 A N H X S+ 0 0 80 -4,-2.3 4,-3.0 2,-0.2 5,-0.4 0.947 111.0 50.2 -62.8 -51.5 -19.8 3.5 33.5 65 68 A A H X S+ 0 0 0 -4,-3.0 4,-1.5 1,-0.2 -1,-0.2 0.818 112.4 50.6 -56.7 -32.3 -19.8 6.9 31.9 66 69 A L H X S+ 0 0 25 -4,-1.9 4,-0.9 -5,-0.3 -2,-0.2 0.945 113.9 40.7 -74.0 -48.5 -19.7 5.1 28.5 67 70 A R H < S+ 0 0 195 -4,-2.5 -2,-0.2 1,-0.1 -3,-0.2 0.949 122.1 39.9 -66.0 -47.6 -22.6 2.7 29.2 68 71 A S H < S+ 0 0 65 -4,-3.0 -3,-0.2 1,-0.2 -2,-0.2 0.867 119.2 39.4 -71.5 -42.7 -24.9 5.2 30.9 69 72 A M H >< S+ 0 0 6 -4,-1.5 3,-2.6 -5,-0.4 10,-0.2 0.526 79.0 125.6 -89.6 -6.4 -24.5 8.4 29.0 70 73 A Q T 3< S+ 0 0 94 -4,-0.9 10,-0.2 1,-0.3 9,-0.0 -0.241 85.5 9.2 -53.4 137.7 -24.3 6.9 25.5 71 74 A G T 3 S+ 0 0 36 8,-2.3 -1,-0.3 1,-0.2 9,-0.1 0.284 90.6 156.2 76.1 -13.4 -27.0 8.6 23.4 72 75 A F < - 0 0 81 -3,-2.6 7,-2.1 6,-0.2 2,-0.3 -0.223 48.4-117.8 -53.1 122.0 -27.7 11.2 26.1 73 76 A P E +D 78 0B 90 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.458 43.1 170.9 -63.8 124.0 -29.2 14.4 24.6 74 77 A F E > -D 77 0B 17 3,-3.4 3,-1.7 -2,-0.3 -59,-0.4 -0.982 66.9 -10.3-141.3 123.1 -26.8 17.2 25.4 75 78 A Y T 3 S- 0 0 51 -2,-0.4 -1,-0.1 1,-0.3 -57,-0.0 0.926 133.4 -51.3 53.4 43.8 -27.1 20.7 23.9 76 79 A D T 3 S+ 0 0 155 1,-0.1 -1,-0.3 -61,-0.1 -62,-0.0 0.529 122.8 94.1 73.7 7.4 -29.8 19.3 21.6 77 80 A K E < S-D 74 0B 65 -3,-1.7 -3,-3.4 -5,-0.1 2,-0.6 -0.972 78.3-109.6-137.7 149.0 -27.7 16.4 20.3 78 81 A P E -D 73 0B 71 0, 0.0 -6,-0.2 0, 0.0 2,-0.2 -0.645 37.1-129.2 -78.2 117.0 -27.2 12.7 21.2 79 82 A M - 0 0 2 -7,-2.1 -8,-2.3 -2,-0.6 2,-0.6 -0.445 16.1-153.9 -64.4 129.4 -23.7 12.2 22.7 80 83 A R E -B 12 0A 117 -68,-1.8 -68,-2.3 -2,-0.2 2,-0.3 -0.933 17.3-168.3-112.2 109.6 -21.8 9.4 20.9 81 84 A I E +B 11 0A 6 -2,-0.6 2,-0.3 -70,-0.2 -70,-0.2 -0.778 15.3 158.4-105.0 145.2 -19.2 7.9 23.3 82 85 A Q E -B 10 0A 78 -72,-2.6 -72,-2.4 -2,-0.3 2,-0.3 -0.856 44.6 -92.1-144.7 176.3 -16.3 5.5 22.7 83 86 A Y E -B 9 0A 30 -2,-0.3 2,-0.3 -74,-0.3 -74,-0.2 -0.731 49.7-102.0 -93.4 146.9 -13.1 4.6 24.4 84 87 A A - 0 0 6 -76,-2.4 -76,-0.2 -2,-0.3 -80,-0.1 -0.547 23.4-131.5 -71.2 127.6 -10.0 6.6 23.4 85 88 A K S S+ 0 0 178 -2,-0.3 2,-0.3 -82,-0.1 -81,-0.2 0.839 88.5 19.7 -43.9 -41.9 -7.8 4.5 21.0 86 89 A T S S- 0 0 106 -80,-0.0 -78,-0.1 1,-0.0 2,-0.1 -0.868 93.5 -85.8-131.6 166.5 -4.7 5.4 23.1 87 90 A D - 0 0 74 -2,-0.3 2,-0.2 1,-0.1 -2,-0.0 -0.390 41.1-119.4 -72.4 145.5 -3.8 6.6 26.6 88 91 A S >> - 0 0 16 1,-0.1 3,-2.1 -2,-0.1 4,-2.0 -0.604 26.3-114.3 -82.6 144.3 -3.8 10.3 27.3 89 92 A D H 3> S+ 0 0 117 1,-0.3 4,-2.9 -2,-0.2 -1,-0.1 0.864 115.3 63.5 -44.7 -46.5 -0.5 11.8 28.5 90 93 A I H 34 S+ 0 0 61 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.842 110.9 39.7 -48.6 -36.2 -1.9 12.6 31.9 91 94 A I H X> S+ 0 0 5 -3,-2.1 3,-1.1 1,-0.1 4,-0.9 0.878 109.3 58.6 -81.4 -42.0 -2.4 8.8 32.3 92 95 A A H 3< S+ 0 0 56 -4,-2.0 2,-2.1 1,-0.3 -2,-0.2 0.947 93.4 69.0 -50.4 -51.3 0.9 7.8 30.6 93 96 A K T 3< S+ 0 0 167 -4,-2.9 -1,-0.3 -5,-0.2 -2,-0.1 0.140 119.5 15.8 -59.4 25.8 2.8 9.8 33.2 94 97 A M T <4 0 0 151 -2,-2.1 -2,-0.2 -3,-1.1 -3,-0.1 -0.056 360.0 360.0-155.3 -90.1 1.7 7.2 35.8 95 98 A K < 0 0 96 -4,-0.9 -2,-0.2 -2,-0.0 -3,-0.1 -0.450 360.0 360.0 -82.2 360.0 0.4 3.8 34.5