==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION/RNA 03-MAR-04 1VC0 . COMPND 2 MOLECULE: HEPATITIS DELTA VIRUS RIBOZYME; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.KE,K.ZHOU,F.DING,J.H.D.CATE,J.A.DOUDNA . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5950.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 62.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 20.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 24.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 A P 0 0 180 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 121.8 41.5 29.4 78.4 2 5 A E - 0 0 90 1,-0.1 2,-0.3 80,-0.0 80,-0.0 0.295 360.0-104.7 -55.6-169.1 40.2 30.4 81.9 3 6 A T - 0 0 37 3,-0.0 -1,-0.1 0, 0.0 3,-0.1 -0.912 19.8-116.5-128.4 155.2 42.5 31.5 84.7 4 7 A R - 0 0 190 -2,-0.3 0, 0.0 81,-0.2 0, 0.0 -0.496 50.9 -76.9 -85.0 155.8 43.9 29.9 87.9 5 8 A P + 0 0 78 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 -0.130 57.7 179.4 -51.2 146.0 43.0 31.3 91.4 6 9 A N - 0 0 8 53,-0.2 50,-0.1 -3,-0.1 57,-0.1 -0.982 44.6-118.2-151.5 157.8 44.9 34.5 92.4 7 10 A H S S+ 0 0 39 -2,-0.3 49,-2.1 55,-0.1 2,-0.4 0.754 103.6 60.3 -64.5 -25.8 45.3 37.0 95.2 8 11 A T E S-A 55 0A 0 47,-0.2 76,-2.4 76,-0.1 2,-0.4 -0.879 72.5-152.2-111.8 136.2 44.1 39.6 92.7 9 12 A I E -AB 54 83A 0 45,-2.4 45,-2.0 -2,-0.4 2,-0.6 -0.840 10.8-143.0-107.0 144.4 40.8 39.7 90.8 10 13 A Y E -AB 53 82A 46 72,-3.5 72,-2.3 -2,-0.4 2,-0.4 -0.948 19.2-170.3-109.5 119.4 40.5 41.4 87.4 11 14 A I E +AB 52 81A 0 41,-3.0 41,-2.2 -2,-0.6 2,-0.2 -0.910 11.2 163.5-112.4 134.4 37.3 43.2 86.9 12 15 A N E + B 0 80A 32 68,-2.4 68,-2.2 -2,-0.4 39,-0.2 -0.789 45.9 67.9-137.9-173.5 36.1 44.6 83.6 13 16 A N S S+ 0 0 50 37,-0.4 2,-0.2 -2,-0.2 38,-0.2 0.761 71.8 156.4 69.6 26.8 33.0 45.9 81.9 14 17 A L - 0 0 2 36,-2.2 2,-0.3 -3,-0.1 -1,-0.2 -0.514 55.8 -89.0 -83.8 152.8 33.1 48.9 84.3 15 18 A N > - 0 0 36 59,-0.3 3,-1.0 -2,-0.2 35,-0.2 -0.434 35.4-157.1 -62.9 121.7 31.5 52.2 83.6 16 19 A E T 3 S+ 0 0 103 -2,-0.3 -1,-0.2 1,-0.2 34,-0.1 0.625 82.6 70.8 -78.7 -12.0 34.1 54.3 81.8 17 20 A K T 3 S+ 0 0 73 2,-0.1 2,-0.4 33,-0.0 -1,-0.2 0.587 76.3 100.4 -80.9 -7.6 32.7 57.6 82.7 18 21 A I S < S- 0 0 24 -3,-1.0 -4,-0.0 1,-0.1 0, 0.0 -0.631 76.6-119.1 -84.7 130.4 33.6 57.3 86.4 19 22 A K > - 0 0 139 -2,-0.4 4,-2.6 1,-0.1 5,-0.2 -0.239 24.4-112.1 -62.8 153.1 36.8 59.1 87.5 20 23 A K H > S+ 0 0 106 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.883 111.8 49.2 -51.4 -51.8 39.7 57.1 89.0 21 24 A D H > S+ 0 0 100 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.921 114.6 44.3 -60.6 -44.9 39.4 58.3 92.6 22 25 A E H > S+ 0 0 92 2,-0.2 4,-3.4 1,-0.2 5,-0.3 0.941 111.2 53.2 -66.9 -46.5 35.7 57.7 92.9 23 26 A L H X S+ 0 0 9 -4,-2.6 4,-2.6 1,-0.2 5,-0.2 0.898 109.8 48.6 -55.2 -44.5 35.9 54.3 91.2 24 27 A K H X S+ 0 0 60 -4,-2.2 4,-1.9 -5,-0.2 -1,-0.2 0.921 113.8 47.6 -62.9 -41.1 38.6 53.1 93.6 25 28 A K H X S+ 0 0 129 -4,-1.8 4,-1.9 -5,-0.2 -2,-0.2 0.962 113.7 45.4 -64.6 -53.4 36.5 54.4 96.5 26 29 A S H X S+ 0 0 30 -4,-3.4 4,-1.4 1,-0.2 -1,-0.2 0.873 110.8 54.5 -57.7 -41.9 33.2 52.8 95.4 27 30 A L H X S+ 0 0 0 -4,-2.6 4,-2.1 -5,-0.3 3,-0.3 0.899 108.6 48.5 -60.7 -40.1 35.0 49.5 94.6 28 31 A H H X S+ 0 0 89 -4,-1.9 4,-2.3 1,-0.2 -1,-0.2 0.893 104.0 62.2 -66.4 -36.4 36.4 49.4 98.1 29 32 A A H < S+ 0 0 75 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.854 115.6 30.1 -58.6 -38.0 32.9 50.1 99.5 30 33 A I H < S+ 0 0 37 -4,-1.4 -1,-0.2 -3,-0.3 -2,-0.2 0.726 124.3 44.2 -96.9 -20.6 31.5 46.9 98.1 31 34 A F H >< S+ 0 0 0 -4,-2.1 3,-1.4 -5,-0.2 4,-0.3 0.586 87.0 83.7-101.3 -11.1 34.6 44.7 98.1 32 35 A S G >< S+ 0 0 52 -4,-2.3 3,-1.1 1,-0.3 -1,-0.2 0.725 80.3 68.2 -65.2 -21.1 36.1 45.3 101.6 33 36 A R G 3 S+ 0 0 171 1,-0.2 -1,-0.3 -3,-0.2 3,-0.1 0.692 89.5 64.2 -72.3 -17.0 33.7 42.8 103.2 34 37 A F G < S- 0 0 19 -3,-1.4 -1,-0.2 1,-0.3 2,-0.2 0.629 121.8 -67.9 -81.2 -10.9 35.4 39.9 101.5 35 38 A G S < S- 0 0 22 -3,-1.1 -1,-0.3 -4,-0.3 0, 0.0 -0.805 75.0 -31.9 146.2 172.9 38.7 40.6 103.3 36 39 A Q - 0 0 115 -2,-0.2 21,-2.0 -3,-0.1 2,-0.5 -0.307 55.0-147.7 -58.4 136.2 41.6 42.9 103.7 37 40 A I E -C 56 0A 25 19,-0.2 19,-0.3 1,-0.1 3,-0.1 -0.942 13.0-167.9-110.6 124.2 42.4 44.8 100.5 38 41 A L E - 0 0 63 17,-3.0 2,-0.3 -2,-0.5 18,-0.2 0.881 67.7 -31.9 -77.0 -36.8 46.0 45.7 99.8 39 42 A D E -C 55 0A 64 16,-1.2 16,-2.9 2,-0.0 2,-0.4 -0.986 45.0-135.4-174.2 163.0 45.3 47.9 96.9 40 43 A I E -C 54 0A 7 -2,-0.3 2,-0.5 14,-0.2 14,-0.2 -0.995 20.7-158.0-133.3 125.7 43.0 48.7 93.9 41 44 A L E +C 53 0A 67 12,-2.2 12,-1.9 -2,-0.4 2,-0.3 -0.926 16.8 167.6-113.4 128.7 44.6 49.7 90.6 42 45 A V - 0 0 13 -2,-0.5 2,-0.4 10,-0.2 10,-0.1 -0.995 8.7-177.9-138.4 140.3 42.6 51.7 88.0 43 46 A S - 0 0 49 5,-0.5 8,-0.4 8,-0.5 7,-0.1 -0.999 19.2-157.7-139.4 137.1 43.8 53.4 84.9 44 47 A R + 0 0 112 -2,-0.4 5,-0.2 5,-0.1 -1,-0.0 0.333 51.4 129.7 -96.6 8.2 41.7 55.4 82.4 45 48 A S S > S- 0 0 57 1,-0.1 4,-2.1 3,-0.1 -2,-0.1 -0.141 77.9 -99.8 -59.2 158.7 44.2 55.0 79.6 46 49 A L T 4 S+ 0 0 147 1,-0.2 -1,-0.1 2,-0.2 3,-0.1 0.879 124.0 39.3 -44.0 -47.0 42.8 53.8 76.2 47 50 A K T 4 S+ 0 0 166 1,-0.2 -1,-0.2 3,-0.0 -2,-0.0 0.812 122.7 37.9 -77.8 -33.9 44.0 50.2 77.0 48 51 A M T >4 S+ 0 0 52 -3,-0.1 3,-1.1 2,-0.0 -5,-0.5 0.476 83.3 117.2-101.8 -0.5 43.2 50.0 80.7 49 52 A R T 3< S+ 0 0 103 -4,-2.1 -5,-0.1 1,-0.2 -33,-0.1 -0.328 73.2 29.2 -67.9 151.2 39.9 51.9 80.9 50 53 A G T 3 S+ 0 0 13 1,-0.3 -36,-2.2 -35,-0.2 -37,-0.4 0.492 107.8 90.0 80.5 6.8 36.8 49.9 82.1 51 54 A Q < - 0 0 33 -3,-1.1 -8,-0.5 -8,-0.4 2,-0.3 -0.872 48.9-177.8-132.5 162.6 39.0 47.6 84.2 52 55 A A E -A 11 0A 0 -41,-2.2 -41,-3.0 -2,-0.3 2,-0.5 -0.979 20.0-139.7-158.2 155.0 40.3 47.3 87.7 53 56 A F E -AC 10 41A 61 -12,-1.9 -12,-2.2 -2,-0.3 2,-0.7 -0.977 14.0-165.5-120.7 112.4 42.5 45.1 89.8 54 57 A V E -AC 9 40A 0 -45,-2.0 -45,-2.4 -2,-0.5 2,-0.8 -0.899 11.0-155.1-101.3 118.2 41.4 44.5 93.4 55 58 A I E -AC 8 39A 0 -16,-2.9 -17,-3.0 -2,-0.7 -16,-1.2 -0.812 9.4-166.8-101.5 103.5 44.3 43.0 95.3 56 59 A F E - C 0 37A 0 -49,-2.1 -19,-0.2 -2,-0.8 3,-0.1 -0.456 24.7-133.5 -83.6 153.4 43.3 40.9 98.3 57 60 A K S S+ 0 0 103 -21,-2.0 2,-0.4 1,-0.2 -1,-0.1 0.902 92.8 39.2 -73.2 -38.5 45.7 39.8 101.0 58 61 A E S >> S- 0 0 114 -22,-0.4 3,-1.3 -51,-0.1 4,-1.3 -0.940 75.1-134.6-120.4 134.9 44.3 36.3 101.0 59 62 A V H 3> S+ 0 0 52 -2,-0.4 4,-2.7 1,-0.3 5,-0.2 0.757 103.6 64.5 -52.9 -30.7 43.2 34.1 98.1 60 63 A S H 3> S+ 0 0 68 2,-0.2 4,-2.8 1,-0.2 -1,-0.3 0.909 101.1 52.0 -64.1 -34.9 40.0 33.0 99.9 61 64 A S H <> S+ 0 0 13 -3,-1.3 4,-3.1 2,-0.2 5,-0.3 0.977 109.7 47.8 -62.2 -55.3 38.8 36.6 99.8 62 65 A A H X S+ 0 0 0 -4,-1.3 4,-3.2 1,-0.2 -2,-0.2 0.937 112.5 49.6 -51.2 -51.6 39.4 36.9 96.0 63 66 A T H X S+ 0 0 21 -4,-2.7 4,-2.5 2,-0.2 -1,-0.2 0.919 113.4 46.2 -54.9 -47.1 37.6 33.6 95.4 64 67 A N H X S+ 0 0 83 -4,-2.8 4,-3.4 -5,-0.2 5,-0.3 0.985 113.1 48.3 -57.6 -59.3 34.7 34.8 97.6 65 68 A A H X S+ 0 0 0 -4,-3.1 4,-2.4 1,-0.2 -2,-0.2 0.877 111.5 52.9 -47.0 -45.5 34.5 38.2 95.9 66 69 A L H X S+ 0 0 27 -4,-3.2 4,-0.6 -5,-0.3 -1,-0.2 0.966 115.3 37.2 -58.5 -56.6 34.7 36.5 92.5 67 70 A R H < S+ 0 0 191 -4,-2.5 3,-0.5 1,-0.2 -2,-0.2 0.919 120.5 46.8 -64.4 -43.8 31.8 34.1 93.1 68 71 A S H < S+ 0 0 66 -4,-3.4 -1,-0.2 -5,-0.2 -2,-0.2 0.827 118.6 35.4 -70.2 -35.4 29.6 36.6 95.1 69 72 A M H >< S+ 0 0 6 -4,-2.4 3,-2.1 -5,-0.3 -1,-0.2 0.262 76.5 133.4-106.4 12.3 29.9 39.7 93.0 70 73 A Q T 3< S+ 0 0 93 -4,-0.6 10,-0.2 -3,-0.5 9,-0.0 -0.446 84.6 8.4 -62.2 130.9 29.9 38.1 89.5 71 74 A G T 3 S+ 0 0 37 8,-2.1 -1,-0.3 1,-0.2 9,-0.1 0.595 87.8 163.5 74.6 11.6 27.4 40.1 87.4 72 75 A F < - 0 0 82 -3,-2.1 7,-2.0 7,-0.3 2,-0.4 -0.458 43.8-119.0 -69.9 124.7 26.8 42.8 90.1 73 76 A P E +D 78 0B 89 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.491 43.7 171.9 -64.1 117.1 25.1 46.0 88.7 74 77 A F E > -D 77 0B 17 3,-2.7 3,-1.2 -2,-0.4 -59,-0.3 -0.990 67.2 -12.5-135.2 121.3 27.6 48.7 89.4 75 78 A Y T 3 S- 0 0 52 -2,-0.4 -1,-0.1 1,-0.3 -57,-0.1 0.915 133.3 -51.1 53.1 43.2 27.2 52.2 88.0 76 79 A D T 3 S+ 0 0 155 1,-0.1 -1,-0.3 -3,-0.1 -62,-0.0 0.622 122.5 96.1 71.0 16.8 24.5 50.8 85.7 77 80 A K E < S-D 74 0B 62 -3,-1.2 -3,-2.7 -5,-0.1 2,-0.5 -0.995 78.4-111.2-142.9 138.5 26.6 47.9 84.4 78 81 A P E -D 73 0B 74 0, 0.0 2,-0.2 0, 0.0 -6,-0.2 -0.508 37.6-131.3 -69.5 117.8 27.0 44.2 85.2 79 82 A M - 0 0 2 -7,-2.0 -8,-2.1 -2,-0.5 2,-0.5 -0.459 15.3-151.1 -67.7 132.0 30.5 43.8 86.6 80 83 A R E -B 12 0A 114 -68,-2.2 -68,-2.4 -2,-0.2 2,-0.4 -0.950 16.1-166.1-109.8 127.9 32.5 40.9 85.0 81 84 A I E +B 11 0A 4 -2,-0.5 2,-0.3 -70,-0.2 -70,-0.2 -0.927 17.4 154.4-121.7 142.2 35.1 39.3 87.3 82 85 A Q E -B 10 0A 81 -72,-2.3 -72,-3.5 -2,-0.4 2,-0.2 -0.895 47.0 -92.0-147.0 170.7 38.0 36.9 86.7 83 86 A Y E -B 9 0A 33 -2,-0.3 -74,-0.2 -74,-0.3 2,-0.2 -0.591 50.4-102.4 -84.7 151.6 41.3 36.1 88.4 84 87 A A - 0 0 5 -76,-2.4 -76,-0.1 -2,-0.2 -80,-0.1 -0.533 23.6-128.7 -74.0 143.2 44.3 38.1 87.2 85 88 A K S S+ 0 0 191 -2,-0.2 2,-0.3 -82,-0.1 -81,-0.2 0.943 88.8 22.7 -56.3 -51.1 46.6 36.2 84.9 86 89 A T S S- 0 0 106 1,-0.1 2,-0.1 -80,-0.0 -78,-0.1 -0.757 93.6 -89.5-119.1 165.4 49.7 37.0 86.9 87 90 A D - 0 0 73 -2,-0.3 2,-0.1 1,-0.1 -1,-0.1 -0.443 42.6-118.9 -71.4 141.9 50.5 38.0 90.4 88 91 A S >> - 0 0 17 -2,-0.1 4,-1.7 1,-0.1 3,-1.3 -0.503 26.0-113.4 -77.1 151.6 50.5 41.8 91.2 89 92 A D H 3> S+ 0 0 115 1,-0.3 4,-3.3 2,-0.2 5,-0.2 0.890 114.7 63.9 -52.8 -45.4 53.9 43.2 92.4 90 93 A I H 34 S+ 0 0 59 1,-0.3 -1,-0.3 2,-0.2 -3,-0.0 0.822 109.5 42.0 -47.1 -36.5 52.5 44.0 95.8 91 94 A I H X> S+ 0 0 6 -3,-1.3 3,-1.3 2,-0.1 4,-0.8 0.829 110.9 54.0 -82.1 -36.9 52.0 40.3 96.2 92 95 A A H 3< S+ 0 0 57 -4,-1.7 -2,-0.2 1,-0.3 -3,-0.2 0.930 96.1 66.8 -62.9 -45.5 55.3 39.3 94.6 93 96 A K T 3< S+ 0 0 174 -4,-3.3 -1,-0.3 2,-0.2 -2,-0.1 0.487 121.5 19.1 -56.7 1.8 57.2 41.5 97.1 94 97 A M T <4 0 0 147 -3,-1.3 -2,-0.2 -5,-0.2 -3,-0.1 0.312 360.0 360.0-129.9 -93.8 55.9 39.0 99.7 95 98 A K < 0 0 96 -4,-0.8 -2,-0.2 0, 0.0 -3,-0.1 -0.484 360.0 360.0 -83.6 360.0 54.8 35.5 98.5