==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION/RNA 04-MAR-04 1VC5 . COMPND 2 MOLECULE: HEPATITIS DELTA VIRUS RIBOZYME; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.KE,K.ZHOU,F.DING,J.H.D.CATE,J.A.DOUDNA . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6108.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 62.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 18.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 24.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 A P 0 0 160 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -46.1 37.6 -30.5 46.1 2 5 A E - 0 0 90 80,-0.1 2,-0.2 83,-0.0 80,-0.1 -0.999 360.0-160.6-139.3 134.3 39.0 -31.5 49.6 3 6 A T - 0 0 49 -2,-0.4 80,-0.1 80,-0.1 82,-0.1 -0.465 39.7 -73.3-102.4 175.8 42.5 -31.5 51.0 4 7 A R - 0 0 217 -2,-0.2 2,-0.2 81,-0.2 -1,-0.1 -0.455 68.9 -78.5 -70.4 142.6 44.0 -33.3 54.0 5 8 A P - 0 0 83 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.199 62.5-176.9 -48.8 103.9 43.1 -32.0 57.5 6 9 A N - 0 0 16 2,-0.3 56,-0.1 -2,-0.2 81,-0.1 -0.497 39.9-115.7 -97.8 169.3 45.2 -28.9 58.0 7 10 A H S S+ 0 0 49 -2,-0.2 49,-1.9 76,-0.1 2,-0.3 0.785 102.9 57.4 -72.0 -30.2 45.5 -26.5 60.9 8 11 A T E S-A 55 0A 0 47,-0.2 76,-2.2 78,-0.1 2,-0.6 -0.809 77.3-142.7-103.8 143.2 44.1 -23.7 58.8 9 12 A I E -AB 54 83A 0 45,-1.8 45,-1.6 -2,-0.3 2,-0.9 -0.933 12.3-139.6-108.9 116.7 40.7 -23.8 57.0 10 13 A Y E -AB 53 82A 51 72,-0.8 72,-2.7 -2,-0.6 2,-0.5 -0.633 24.5-172.2 -75.1 103.1 40.5 -22.2 53.6 11 14 A I E +AB 52 81A 0 41,-2.0 41,-2.3 -2,-0.9 70,-0.3 -0.880 12.6 161.6-102.0 126.2 37.1 -20.4 53.5 12 15 A N E + B 0 80A 22 68,-3.3 68,-1.9 -2,-0.5 39,-0.2 -0.744 40.9 64.6-134.1-178.2 36.0 -18.9 50.2 13 16 A N S S+ 0 0 54 37,-0.3 38,-0.2 -2,-0.2 -1,-0.1 0.778 73.0 151.2 68.5 30.7 32.8 -17.6 48.4 14 17 A L - 0 0 5 36,-2.9 2,-0.3 -3,-0.1 -1,-0.2 -0.353 56.2 -75.5 -87.3 169.0 32.6 -14.8 51.0 15 18 A N - 0 0 40 59,-0.3 3,-0.2 1,-0.2 35,-0.2 -0.518 36.2-167.1 -69.4 123.1 31.1 -11.3 50.5 16 19 A E S S+ 0 0 98 -2,-0.3 -1,-0.2 1,-0.2 34,-0.1 0.821 81.1 65.8 -78.8 -34.7 33.5 -9.0 48.5 17 20 A K S S+ 0 0 75 2,-0.0 -1,-0.2 0, 0.0 2,-0.1 0.753 82.5 94.3 -61.5 -28.6 31.6 -5.7 49.3 18 21 A I S S- 0 0 27 -3,-0.2 -4,-0.0 1,-0.1 0, 0.0 -0.430 82.6-112.8 -69.1 138.5 32.5 -6.0 53.0 19 22 A K > - 0 0 128 -2,-0.1 4,-2.0 1,-0.1 5,-0.2 -0.216 24.6-111.5 -69.2 162.1 35.7 -4.2 54.2 20 23 A K H > S+ 0 0 92 2,-0.2 4,-2.7 1,-0.2 5,-0.2 0.968 110.1 39.2 -61.0 -65.0 38.8 -6.1 55.4 21 24 A D H > S+ 0 0 100 1,-0.2 4,-0.5 2,-0.2 -1,-0.2 0.775 116.7 52.7 -62.0 -31.0 39.0 -5.3 59.2 22 25 A E H >> S+ 0 0 87 2,-0.2 4,-2.1 1,-0.2 3,-0.5 0.917 113.1 42.3 -69.4 -46.6 35.2 -5.6 59.6 23 26 A L H 3X S+ 0 0 9 -4,-2.0 4,-2.2 1,-0.2 5,-0.3 0.860 109.3 59.0 -67.4 -37.9 35.1 -9.0 57.9 24 27 A K H 3< S+ 0 0 56 -4,-2.7 4,-0.4 1,-0.2 -1,-0.2 0.689 113.4 39.8 -63.6 -20.9 38.2 -10.1 59.8 25 28 A K H X S+ 0 0 0 -4,-2.2 3,-0.7 2,-0.2 4,-0.6 0.903 111.4 48.2 -67.0 -43.2 34.3 -14.1 61.1 28 31 A H H >> S+ 0 0 85 -4,-0.4 4,-1.4 -5,-0.3 3,-0.6 0.836 103.8 62.6 -62.6 -35.8 36.0 -14.2 64.5 29 32 A A H 3< S+ 0 0 71 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.752 115.4 30.6 -62.6 -27.0 32.7 -13.3 66.1 30 33 A I H << S+ 0 0 47 -4,-0.7 -1,-0.2 -3,-0.7 -2,-0.2 0.334 122.1 49.4-114.2 3.6 31.1 -16.5 64.8 31 34 A F H XX S+ 0 0 0 -3,-0.6 3,-0.9 -4,-0.6 4,-0.7 0.424 79.1 94.6-119.7 -4.5 34.2 -18.8 64.8 32 35 A S T 3< S+ 0 0 66 -4,-1.4 -1,-0.1 1,-0.2 -4,-0.1 -0.104 77.3 64.4 -84.5 38.4 35.5 -18.1 68.4 33 36 A R T 34 S+ 0 0 170 -2,-0.6 -1,-0.2 -3,-0.1 3,-0.1 0.548 91.6 56.2-127.9 -25.5 33.7 -21.2 69.8 34 37 A F T <4 S- 0 0 31 -3,-0.9 2,-0.3 1,-0.3 -2,-0.1 0.852 121.0 -40.6 -78.6 -37.8 35.4 -24.1 68.1 35 38 A G S < S- 0 0 22 -4,-0.7 2,-0.7 26,-0.1 -1,-0.3 -0.974 74.9 -58.5-178.5 171.0 38.9 -23.2 69.1 36 39 A Q - 0 0 127 -2,-0.3 21,-1.4 -3,-0.1 2,-0.4 -0.535 50.1-146.8 -70.5 108.6 41.5 -20.6 69.7 37 40 A I E -C 56 0A 22 -2,-0.7 19,-0.2 19,-0.2 3,-0.1 -0.629 10.1-164.5 -77.6 129.9 42.1 -18.7 66.4 38 41 A L E - 0 0 67 17,-2.3 2,-0.3 -2,-0.4 -1,-0.2 0.943 67.6 -28.8 -78.3 -53.1 45.7 -17.6 66.0 39 42 A D E -C 55 0A 75 16,-0.5 16,-1.7 14,-0.1 2,-0.5 -0.902 50.7-136.5-166.4 138.2 45.0 -15.1 63.1 40 43 A I E -C 54 0A 6 -2,-0.3 2,-0.6 14,-0.2 14,-0.2 -0.856 20.2-148.4 -96.9 131.1 42.5 -14.7 60.2 41 44 A L E +C 53 0A 85 12,-2.3 12,-1.6 -2,-0.5 2,-0.4 -0.893 20.4 174.4-105.7 114.8 44.1 -13.6 56.9 42 45 A V - 0 0 8 -2,-0.6 2,-0.3 10,-0.2 10,-0.1 -0.980 6.6-171.1-123.4 126.7 41.9 -11.4 54.7 43 46 A S - 0 0 38 5,-0.5 7,-0.3 8,-0.4 8,-0.2 -0.826 21.7-160.1-117.3 155.8 43.0 -9.9 51.4 44 47 A R + 0 0 106 -2,-0.3 5,-0.2 5,-0.1 -1,-0.1 0.106 52.7 123.4-119.0 19.3 41.5 -7.3 49.0 45 48 A S S S- 0 0 61 3,-0.1 4,-0.5 1,-0.0 -2,-0.1 0.047 75.7 -93.9 -72.6-176.5 43.5 -8.2 45.9 46 49 A L S S+ 0 0 148 2,-0.2 3,-0.3 1,-0.1 -1,-0.0 0.987 119.3 10.5 -66.0 -63.4 42.3 -9.2 42.4 47 50 A K S S+ 0 0 183 1,-0.2 -1,-0.1 3,-0.0 -2,-0.0 0.793 122.9 67.1 -85.6 -30.9 42.4 -13.0 42.7 48 51 A M S > S+ 0 0 68 2,-0.1 3,-0.6 -6,-0.0 -5,-0.5 0.497 83.7 97.8 -72.4 -3.9 43.0 -13.1 46.5 49 52 A R T 3 + 0 0 92 -4,-0.5 -5,-0.1 -3,-0.3 3,-0.1 -0.360 68.9 38.1 -79.4 163.5 39.5 -11.6 47.2 50 53 A G T 3 S+ 0 0 16 -7,-0.3 -36,-2.9 1,-0.3 -37,-0.3 0.185 105.0 79.6 84.4 -16.8 36.4 -13.6 48.1 51 54 A Q < - 0 0 31 -3,-0.6 -8,-0.4 -39,-0.2 2,-0.3 -0.567 53.7-171.4-114.1 176.9 38.5 -16.0 50.3 52 55 A A E -A 11 0A 1 -41,-2.3 -41,-2.0 -2,-0.2 2,-0.5 -0.967 19.1-132.6-161.6 162.1 40.0 -16.1 53.8 53 56 A F E -AC 10 41A 54 -12,-1.6 -12,-2.3 -2,-0.3 2,-0.9 -0.943 13.4-167.7-126.8 109.4 42.3 -18.2 56.0 54 57 A V E -AC 9 40A 0 -45,-1.6 -45,-1.8 -2,-0.5 2,-0.5 -0.830 14.1-153.6 -98.0 100.3 41.2 -19.0 59.6 55 58 A I E -AC 8 39A 3 -16,-1.7 -17,-2.3 -2,-0.9 -16,-0.5 -0.639 12.0-164.0 -78.5 118.7 44.3 -20.4 61.3 56 59 A F E - C 0 37A 0 -49,-1.9 -19,-0.2 -2,-0.5 -20,-0.0 -0.807 18.1-148.1-104.8 146.2 43.3 -22.8 64.2 57 60 A K S S+ 0 0 98 -21,-1.4 2,-0.3 -2,-0.3 -1,-0.2 0.985 86.4 44.6 -72.9 -65.0 45.6 -24.0 67.0 58 61 A E S > S- 0 0 111 -22,-0.2 4,-1.2 1,-0.1 3,-0.5 -0.651 75.1-142.4 -82.7 138.6 44.1 -27.4 67.6 59 62 A V H > S+ 0 0 52 -2,-0.3 4,-1.7 1,-0.2 -1,-0.1 0.868 101.8 60.9 -66.7 -37.9 43.3 -29.5 64.5 60 63 A S H > S+ 0 0 69 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.744 100.7 56.3 -60.5 -27.0 40.1 -30.9 66.2 61 64 A S H > S+ 0 0 8 -3,-0.5 4,-1.6 2,-0.2 -1,-0.2 0.944 108.8 43.5 -68.5 -51.2 38.9 -27.3 66.4 62 65 A A H X S+ 0 0 0 -4,-1.2 4,-1.0 1,-0.2 -2,-0.2 0.732 109.1 60.9 -66.6 -24.9 39.2 -26.7 62.6 63 66 A T H X S+ 0 0 57 -4,-1.7 4,-1.3 2,-0.2 -1,-0.2 0.907 112.9 35.0 -66.7 -45.0 37.7 -30.2 62.1 64 67 A N H X S+ 0 0 91 -4,-1.4 4,-1.1 1,-0.2 5,-0.2 0.666 112.0 62.5 -82.9 -19.6 34.4 -29.1 63.8 65 68 A A H X S+ 0 0 0 -4,-1.6 4,-0.7 2,-0.2 -1,-0.2 0.733 107.6 44.3 -74.4 -24.5 34.7 -25.6 62.5 66 69 A L H X S+ 0 0 25 -4,-1.0 4,-0.5 2,-0.1 -2,-0.2 0.891 114.0 45.5 -85.0 -46.1 34.4 -26.9 58.9 67 70 A R H < S+ 0 0 218 -4,-1.3 -2,-0.2 1,-0.2 -3,-0.1 0.724 119.1 41.1 -74.0 -24.0 31.6 -29.5 59.4 68 71 A S H < S+ 0 0 55 -4,-1.1 -1,-0.2 1,-0.1 -3,-0.1 0.831 117.6 42.7 -92.2 -38.3 29.3 -27.1 61.4 69 72 A M H >< S+ 0 0 20 -4,-0.7 3,-1.6 -5,-0.2 2,-0.3 0.342 80.9 128.9 -94.0 5.5 29.8 -23.8 59.5 70 73 A Q T 3< S- 0 0 91 -4,-0.5 10,-0.2 1,-0.3 -4,-0.0 -0.474 85.2 -1.4 -67.0 122.1 29.6 -25.4 56.0 71 74 A G T 3 S+ 0 0 40 8,-2.7 -1,-0.3 -2,-0.3 9,-0.1 0.501 91.8 152.7 76.6 5.6 27.0 -23.5 53.9 72 75 A F < - 0 0 87 -3,-1.6 7,-1.3 7,-0.3 -1,-0.3 -0.554 51.0-110.8 -71.7 121.9 26.1 -21.2 56.8 73 76 A P B +D 78 0B 85 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.245 39.5 176.9 -54.0 136.5 24.9 -17.8 55.5 74 77 A F S S- 0 0 18 3,-2.1 -59,-0.3 -3,-0.0 3,-0.3 -0.889 72.0 -13.5-150.4 111.8 27.2 -14.9 56.1 75 78 A Y S S- 0 0 78 -2,-0.3 -57,-0.1 1,-0.2 -1,-0.0 0.912 131.7 -52.3 55.4 47.6 26.5 -11.3 54.9 76 79 A D S S+ 0 0 104 1,-0.2 -1,-0.2 -61,-0.0 0, 0.0 0.727 123.4 107.3 60.8 27.5 23.7 -12.9 52.7 77 80 A K S S- 0 0 66 -3,-0.3 -3,-2.1 -5,-0.1 2,-0.2 -0.992 71.3-123.0-138.9 128.0 26.3 -15.4 51.3 78 81 A P B -D 73 0B 71 0, 0.0 2,-0.6 0, 0.0 -6,-0.1 -0.508 31.9-120.3 -71.0 131.7 26.8 -19.1 52.0 79 82 A M - 0 0 2 -7,-1.3 -8,-2.7 -10,-0.2 2,-0.8 -0.627 20.8-163.2 -80.6 117.1 30.2 -20.0 53.3 80 83 A R E -B 12 0A 112 -68,-1.9 -68,-3.3 -2,-0.6 2,-0.3 -0.865 20.9-177.7 -99.2 100.8 32.2 -22.5 51.1 81 84 A I E +B 11 0A 7 -2,-0.8 -70,-0.3 -70,-0.3 2,-0.3 -0.761 10.8 165.4-107.3 147.2 34.9 -23.8 53.4 82 85 A Q E -B 10 0A 61 -72,-2.7 -72,-0.8 -2,-0.3 2,-0.2 -0.844 40.5 -87.5-140.9 176.2 37.8 -26.2 52.7 83 86 A Y E -B 9 0A 29 -74,-0.3 -74,-0.2 -2,-0.3 2,-0.1 -0.640 51.6 -98.1 -85.5 151.8 41.0 -27.4 54.3 84 87 A A - 0 0 4 -76,-2.2 -1,-0.1 -2,-0.2 -76,-0.1 -0.455 20.8-135.7 -70.2 141.6 44.3 -25.4 53.6 85 88 A K S S+ 0 0 190 -2,-0.1 2,-0.3 1,-0.1 -81,-0.2 0.845 87.6 14.3 -64.9 -36.7 46.5 -26.9 50.9 86 89 A T S S- 0 0 107 -80,-0.0 -78,-0.1 -78,-0.0 -1,-0.1 -0.932 93.4 -86.5-137.8 160.1 49.6 -26.3 53.1 87 90 A D - 0 0 70 -2,-0.3 -2,-0.0 1,-0.1 2,-0.0 -0.399 48.5-111.2 -67.6 141.0 50.4 -25.4 56.7 88 91 A S > - 0 0 19 -2,-0.1 4,-2.5 1,-0.1 3,-0.4 -0.281 26.1-108.0 -71.6 158.9 50.4 -21.8 57.7 89 92 A D H > S+ 0 0 136 1,-0.2 4,-1.0 2,-0.2 -1,-0.1 0.789 120.0 53.7 -58.5 -33.6 53.6 -19.9 58.6 90 93 A I H > S+ 0 0 76 2,-0.2 4,-0.6 1,-0.2 -1,-0.2 0.870 112.4 43.9 -68.6 -38.8 52.6 -19.7 62.3 91 94 A I H >> S+ 0 0 14 -3,-0.4 4,-1.5 1,-0.2 3,-0.6 0.822 108.6 58.2 -73.9 -33.8 52.1 -23.5 62.3 92 95 A A H 3< S+ 0 0 62 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.763 101.0 57.6 -65.5 -27.2 55.3 -24.0 60.4 93 96 A K H 3< S+ 0 0 176 -4,-1.0 -1,-0.2 -5,-0.2 -2,-0.2 0.752 103.7 53.8 -73.1 -27.0 57.1 -22.2 63.2 94 97 A M H << 0 0 142 -4,-0.6 -2,-0.2 -3,-0.6 -1,-0.1 0.972 360.0 360.0 -72.0 -58.4 55.8 -24.8 65.7 95 98 A K < 0 0 126 -4,-1.5 -1,-0.3 0, 0.0 0, 0.0 -0.996 360.0 360.0-150.0 360.0 57.1 -28.0 64.0