==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION/RNA 04-MAR-04 1VC6 . COMPND 2 MOLECULE: HEPATITIS DELTA VIRUS RIBOZYME; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.KE,K.ZHOU,F.DING,J.H.D.CATE,J.A.DOUDNA . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5928.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 64.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 21.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 24.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 A P 0 0 180 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 114.8 41.2 28.9 78.0 2 5 A E - 0 0 93 1,-0.1 2,-0.3 80,-0.0 80,-0.0 0.299 360.0-100.3 -53.0-171.4 40.1 30.3 81.4 3 6 A T - 0 0 37 3,-0.0 -1,-0.1 1,-0.0 82,-0.1 -0.832 24.6-109.3-121.2 159.5 42.6 31.4 84.1 4 7 A R - 0 0 195 -2,-0.3 -1,-0.0 81,-0.2 0, 0.0 -0.516 52.4 -79.8 -83.3 151.8 44.1 29.9 87.2 5 8 A P - 0 0 79 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.125 58.4-179.8 -48.9 142.5 43.1 31.3 90.7 6 9 A N - 0 0 11 53,-0.2 50,-0.1 -3,-0.1 57,-0.1 -0.987 44.4-120.2-149.4 156.3 44.9 34.5 91.7 7 10 A H S S+ 0 0 39 -2,-0.3 49,-2.4 55,-0.1 2,-0.5 0.742 101.7 64.7 -63.8 -24.8 45.2 37.0 94.5 8 11 A T E S-A 55 0A 0 47,-0.2 76,-3.0 76,-0.1 2,-0.4 -0.893 71.6-153.4-109.4 129.7 44.1 39.6 91.9 9 12 A I E -AB 54 83A 0 45,-2.6 45,-2.3 -2,-0.5 2,-0.5 -0.833 10.7-147.1-100.6 134.1 40.7 39.7 90.3 10 13 A Y E -AB 53 82A 44 72,-2.5 72,-1.9 -2,-0.4 2,-0.3 -0.901 18.1-172.8-103.0 128.1 40.4 41.3 86.9 11 14 A I E +AB 52 81A 0 41,-2.6 41,-2.0 -2,-0.5 2,-0.3 -0.904 8.4 165.8-119.8 144.3 37.2 43.1 86.1 12 15 A N E + B 0 80A 29 68,-2.8 68,-1.5 -2,-0.3 39,-0.2 -0.869 47.7 68.3-147.4-176.3 36.0 44.6 82.9 13 16 A N S S+ 0 0 49 -2,-0.3 2,-0.3 1,-0.3 38,-0.1 0.841 71.5 158.3 67.8 33.8 32.9 46.0 81.1 14 17 A L - 0 0 2 36,-2.1 2,-0.3 -3,-0.1 -1,-0.3 -0.694 55.7 -89.8 -90.7 144.4 33.0 48.8 83.7 15 18 A N > - 0 0 36 59,-0.4 3,-1.2 -2,-0.3 35,-0.2 -0.329 36.2-158.7 -56.4 114.2 31.3 52.1 83.0 16 19 A E T 3 S+ 0 0 104 -2,-0.3 -1,-0.2 1,-0.2 34,-0.1 0.673 81.2 73.9 -71.0 -17.4 34.0 54.2 81.3 17 20 A K T 3 S+ 0 0 81 2,-0.1 2,-0.4 33,-0.0 -1,-0.2 0.597 77.0 97.4 -74.1 -7.6 32.4 57.5 82.1 18 21 A I S < S- 0 0 22 -3,-1.2 32,-0.2 1,-0.1 -4,-0.0 -0.659 79.1-116.6 -86.7 131.6 33.4 57.2 85.7 19 22 A K > - 0 0 139 -2,-0.4 4,-2.7 1,-0.1 5,-0.2 -0.237 24.6-114.5 -62.3 150.3 36.6 59.0 86.9 20 23 A K H > S+ 0 0 104 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.843 111.6 49.7 -50.8 -45.0 39.5 57.0 88.2 21 24 A D H > S+ 0 0 98 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.956 114.1 43.2 -64.7 -51.0 39.4 58.2 91.8 22 25 A E H > S+ 0 0 91 1,-0.2 4,-3.4 2,-0.2 5,-0.3 0.914 112.3 54.5 -62.1 -44.3 35.6 57.7 92.3 23 26 A L H X S+ 0 0 7 -4,-2.7 4,-2.3 1,-0.2 5,-0.2 0.913 106.4 50.8 -57.7 -45.7 35.8 54.3 90.6 24 27 A K H X S+ 0 0 69 -4,-2.1 4,-2.2 -5,-0.2 -1,-0.2 0.915 114.8 44.8 -59.1 -39.7 38.5 53.0 92.9 25 28 A K H X S+ 0 0 127 -4,-1.7 4,-2.0 2,-0.2 -2,-0.2 0.968 112.2 49.0 -69.7 -53.7 36.4 54.1 95.9 26 29 A S H X S+ 0 0 31 -4,-3.4 4,-1.0 1,-0.2 -1,-0.2 0.824 112.9 50.3 -55.0 -34.1 33.1 52.8 94.7 27 30 A L H >X S+ 0 0 0 -4,-2.3 4,-1.8 -5,-0.3 3,-0.7 0.938 108.4 49.8 -71.3 -46.5 34.8 49.5 94.0 28 31 A H H 3X S+ 0 0 87 -4,-2.2 4,-2.0 1,-0.2 -2,-0.2 0.825 103.7 64.3 -59.7 -29.1 36.4 49.2 97.4 29 32 A A H 3< S+ 0 0 73 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.873 112.4 31.1 -64.5 -37.7 33.0 49.9 98.8 30 33 A I H << S+ 0 0 40 -4,-1.0 -1,-0.2 -3,-0.7 -2,-0.2 0.638 125.0 42.2 -98.7 -12.5 31.5 46.7 97.4 31 34 A F H >< S+ 0 0 0 -4,-1.8 3,-1.7 1,-0.1 4,-0.3 0.684 85.6 86.0-105.5 -22.0 34.5 44.4 97.5 32 35 A S G >< S+ 0 0 52 -4,-2.0 3,-0.8 -5,-0.3 -1,-0.1 0.718 83.8 65.7 -53.1 -21.3 36.2 45.2 100.9 33 36 A R G 3 S+ 0 0 175 1,-0.2 -1,-0.3 -5,-0.1 3,-0.1 0.818 88.7 62.9 -71.4 -33.3 33.9 42.7 102.5 34 37 A F G < S- 0 0 18 -3,-1.7 -1,-0.2 1,-0.3 2,-0.2 0.539 124.5 -62.1 -69.7 -6.3 35.3 39.6 100.7 35 38 A G S < S- 0 0 18 -3,-0.8 -1,-0.3 -4,-0.3 -4,-0.0 -0.697 76.3 -36.0 142.6 165.7 38.6 40.3 102.4 36 39 A Q - 0 0 113 -2,-0.2 21,-1.4 -3,-0.1 2,-0.5 -0.109 53.6-144.1 -51.2 147.8 41.5 42.7 102.9 37 40 A I E -C 56 0A 23 19,-0.2 19,-0.2 1,-0.1 3,-0.1 -0.974 14.8-167.9-121.9 121.6 42.4 44.6 99.7 38 41 A L E - 0 0 53 17,-2.8 2,-0.3 -2,-0.5 18,-0.2 0.911 69.6 -39.2 -73.6 -39.3 46.0 45.5 99.0 39 42 A D E -C 55 0A 70 16,-1.2 16,-2.9 2,-0.0 2,-0.4 -0.975 45.0-132.2-176.0 164.6 45.2 47.9 96.2 40 43 A I E -C 54 0A 7 -2,-0.3 2,-0.5 14,-0.2 14,-0.2 -1.000 20.9-155.7-132.0 131.0 42.9 48.6 93.2 41 44 A L E +C 53 0A 69 12,-2.0 12,-1.8 -2,-0.4 2,-0.4 -0.941 16.7 169.9-117.0 123.8 44.3 49.7 89.9 42 45 A V E -C 52 0A 11 -2,-0.5 2,-0.3 10,-0.2 10,-0.1 -0.983 7.5-178.6-131.7 140.9 42.4 51.6 87.4 43 46 A S - 0 0 50 8,-0.6 8,-0.5 5,-0.6 7,-0.1 -0.996 18.5-159.0-138.2 139.8 43.5 53.4 84.2 44 47 A R + 0 0 111 -2,-0.3 5,-0.2 5,-0.2 -1,-0.0 0.216 52.7 126.8-103.7 12.7 41.3 55.4 81.8 45 48 A S S > S- 0 0 52 1,-0.1 4,-2.2 3,-0.1 -2,-0.1 -0.185 79.4 -99.2 -66.1 163.5 43.7 55.1 78.9 46 49 A L T 4 S+ 0 0 150 1,-0.2 -1,-0.1 2,-0.2 -3,-0.0 0.868 123.7 39.1 -50.9 -41.5 42.6 53.7 75.6 47 50 A K T 4 S+ 0 0 164 1,-0.2 -1,-0.2 3,-0.0 -3,-0.0 0.783 125.4 34.0 -82.9 -30.2 44.0 50.3 76.4 48 51 A M T >4 S+ 0 0 56 -3,-0.1 3,-1.2 2,-0.0 -5,-0.6 0.424 83.7 119.5-110.0 2.3 43.0 50.0 80.1 49 52 A R T 3< S+ 0 0 98 -4,-2.2 -5,-0.2 1,-0.2 -33,-0.1 -0.330 74.4 26.4 -68.8 149.6 39.7 51.9 80.4 50 53 A G T 3 S+ 0 0 10 1,-0.2 -36,-2.1 -35,-0.2 2,-0.3 0.392 108.2 94.8 80.4 -3.4 36.7 50.1 81.6 51 54 A Q < - 0 0 32 -3,-1.2 -8,-0.6 -8,-0.5 2,-0.3 -0.844 47.9-179.2-122.3 157.8 38.9 47.6 83.5 52 55 A A E -AC 11 42A 0 -41,-2.0 -41,-2.6 -2,-0.3 2,-0.5 -0.987 20.7-141.2-151.4 154.1 40.2 47.3 87.0 53 56 A F E -AC 10 41A 64 -12,-1.8 -12,-2.0 -2,-0.3 2,-0.8 -0.943 13.5-162.9-120.4 107.4 42.5 45.0 89.0 54 57 A V E -AC 9 40A 0 -45,-2.3 -45,-2.6 -2,-0.5 2,-0.9 -0.811 11.6-154.0 -91.8 112.4 41.3 44.4 92.6 55 58 A I E -AC 8 39A 0 -16,-2.9 -17,-2.8 -2,-0.8 -16,-1.2 -0.756 10.6-166.2 -94.3 102.3 44.3 43.0 94.4 56 59 A F E - C 0 37A 0 -49,-2.4 -19,-0.2 -2,-0.9 3,-0.1 -0.542 22.3-138.1 -84.7 146.6 43.2 40.8 97.4 57 60 A K S S+ 0 0 92 -21,-1.4 2,-0.5 -2,-0.2 -1,-0.1 0.881 92.1 40.9 -70.5 -38.6 45.6 39.7 100.1 58 61 A E S >> S- 0 0 118 -22,-0.4 3,-1.6 1,-0.1 4,-1.3 -0.959 75.5-138.4-120.2 124.0 44.2 36.2 100.3 59 62 A V H 3> S+ 0 0 49 -2,-0.5 4,-3.3 1,-0.3 5,-0.2 0.807 102.6 62.7 -41.3 -43.7 43.2 34.2 97.2 60 63 A S H 3> S+ 0 0 61 1,-0.2 4,-3.1 2,-0.2 -1,-0.3 0.917 102.0 51.9 -52.8 -44.1 40.1 32.9 99.0 61 64 A S H <> S+ 0 0 12 -3,-1.6 4,-2.9 2,-0.2 5,-0.3 0.958 110.9 46.1 -57.1 -55.3 38.8 36.5 99.2 62 65 A A H X S+ 0 0 0 -4,-1.3 4,-3.3 1,-0.2 -2,-0.2 0.955 112.8 51.6 -52.0 -52.9 39.4 37.0 95.5 63 66 A T H X S+ 0 0 19 -4,-3.3 4,-2.3 2,-0.2 -2,-0.2 0.911 113.4 43.1 -49.8 -51.6 37.7 33.6 94.7 64 67 A N H X S+ 0 0 70 -4,-3.1 4,-2.9 1,-0.2 3,-0.5 0.993 113.6 51.8 -56.8 -62.6 34.7 34.5 96.8 65 68 A A H X S+ 0 0 0 -4,-2.9 4,-2.1 1,-0.3 5,-0.3 0.838 109.2 53.0 -39.8 -45.4 34.5 38.0 95.4 66 69 A L H X S+ 0 0 24 -4,-3.3 4,-0.9 -5,-0.3 -1,-0.3 0.944 113.6 39.1 -62.8 -48.5 34.7 36.4 91.9 67 70 A R H < S+ 0 0 192 -4,-2.3 -2,-0.2 -3,-0.5 -1,-0.2 0.941 119.6 46.0 -69.4 -43.5 31.8 34.0 92.4 68 71 A S H < S+ 0 0 71 -4,-2.9 -2,-0.2 1,-0.2 -3,-0.2 0.901 117.8 36.0 -66.7 -47.7 29.6 36.4 94.4 69 72 A M H >< S+ 0 0 8 -4,-2.1 3,-3.0 -5,-0.3 -1,-0.2 0.532 78.1 132.1 -88.6 -6.9 29.8 39.7 92.4 70 73 A Q T 3< S+ 0 0 95 -4,-0.9 10,-0.2 1,-0.3 9,-0.1 -0.194 85.0 6.0 -48.1 127.2 29.9 38.2 88.9 71 74 A G T 3 S+ 0 0 31 8,-1.5 -1,-0.3 1,-0.2 9,-0.1 0.524 89.5 159.7 75.0 5.3 27.4 40.1 86.8 72 75 A F < - 0 0 80 -3,-3.0 7,-2.6 6,-0.2 -1,-0.2 -0.409 47.0-114.6 -63.9 128.0 26.7 42.6 89.5 73 76 A P E +D 78 0B 88 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.469 43.8 171.1 -64.5 129.7 25.1 45.8 88.2 74 77 A F E > -D 77 0B 18 3,-2.1 3,-1.8 -2,-0.2 -59,-0.4 -0.964 70.0 -10.5-146.1 121.2 27.5 48.7 88.8 75 78 A Y T 3 S- 0 0 54 -2,-0.4 -1,-0.1 1,-0.3 -57,-0.1 0.911 132.1 -55.0 52.6 42.6 27.0 52.1 87.4 76 79 A D T 3 S+ 0 0 158 1,-0.1 -1,-0.3 -61,-0.0 0, 0.0 0.548 120.2 101.0 69.8 11.3 24.3 50.5 85.2 77 80 A K E < S-D 74 0B 62 -3,-1.8 -3,-2.1 -5,-0.1 2,-0.6 -0.990 77.7-112.1-132.4 138.5 26.5 47.8 83.7 78 81 A P E -D 73 0B 75 0, 0.0 -6,-0.2 0, 0.0 -7,-0.1 -0.510 38.1-127.6 -68.6 112.0 26.9 44.1 84.6 79 82 A M - 0 0 2 -7,-2.6 -8,-1.5 -2,-0.6 2,-0.5 -0.243 18.1-152.1 -57.2 145.6 30.4 43.7 86.1 80 83 A R E -B 12 0A 114 -68,-1.5 -68,-2.8 -10,-0.2 2,-0.3 -0.990 17.1-170.9-125.7 121.7 32.5 41.0 84.4 81 84 A I E +B 11 0A 8 -2,-0.5 2,-0.3 -70,-0.2 -70,-0.2 -0.823 15.6 153.7-118.7 154.3 35.1 39.3 86.6 82 85 A Q E -B 10 0A 88 -72,-1.9 -72,-2.5 -2,-0.3 2,-0.3 -0.914 47.6 -88.0-157.1 176.0 38.0 36.9 86.2 83 86 A Y E -B 9 0A 33 -2,-0.3 -74,-0.2 -74,-0.3 -76,-0.1 -0.724 54.2 -99.4 -92.2 147.7 41.3 36.0 87.8 84 87 A A - 0 0 3 -76,-3.0 -76,-0.1 -2,-0.3 -80,-0.1 -0.390 25.9-126.0 -64.3 144.3 44.2 38.1 86.7 85 88 A K S S+ 0 0 185 1,-0.1 2,-0.3 -82,-0.1 -81,-0.2 0.816 89.4 11.4 -61.5 -31.3 46.4 36.2 84.1 86 89 A T S S- 0 0 100 -78,-0.0 -1,-0.1 -80,-0.0 -78,-0.1 -0.953 93.4 -78.0-145.1 165.4 49.4 36.8 86.3 87 90 A D - 0 0 74 -2,-0.3 2,-0.2 1,-0.1 -2,-0.0 -0.336 44.7-123.3 -65.8 139.7 50.5 38.0 89.8 88 91 A S >> - 0 0 19 1,-0.1 3,-2.1 -2,-0.0 4,-1.7 -0.585 27.2-110.8 -80.1 148.5 50.5 41.8 90.4 89 92 A D H 3> S+ 0 0 111 1,-0.3 4,-2.8 2,-0.2 5,-0.1 0.788 117.2 65.0 -49.5 -35.1 53.9 43.2 91.5 90 93 A I H 34 S+ 0 0 64 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.856 108.0 42.3 -57.6 -35.0 52.5 43.9 94.9 91 94 A I H X> S+ 0 0 6 -3,-2.1 3,-1.9 1,-0.1 4,-0.7 0.915 110.1 53.9 -78.4 -46.4 52.2 40.2 95.3 92 95 A A H 3< S+ 0 0 60 -4,-1.7 -2,-0.2 1,-0.3 -3,-0.1 0.941 95.4 68.6 -52.8 -49.7 55.5 39.2 93.8 93 96 A K T 3< S+ 0 0 179 -4,-2.8 -1,-0.3 2,-0.2 -2,-0.1 0.416 121.2 16.5 -54.0 7.0 57.2 41.5 96.2 94 97 A M T <4 0 0 142 -3,-1.9 -2,-0.2 -5,-0.1 -3,-0.1 0.198 360.0 360.0-136.8 -93.8 56.1 39.0 98.8 95 98 A K < 0 0 100 -4,-0.7 -2,-0.2 0, 0.0 -3,-0.1 -0.552 360.0 360.0 -86.0 360.0 55.0 35.5 97.7