==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 10-MAR-04 1VCS . COMPND 2 MOLECULE: VESICLE TRANSPORT THROUGH INTERACTION WITH T- . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR T.ABE,H.HIROTA,T.TOMIZAWA,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA, . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7914.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 72 70.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 58 56.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 131 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 152.8 -35.8 -7.5 0.9 2 2 A S + 0 0 129 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.361 360.0 117.7-179.4 89.3 -32.8 -7.5 -1.3 3 3 A S + 0 0 137 -2,-0.1 2,-0.3 2,-0.0 0, 0.0 -0.982 18.8 128.0-159.0 151.1 -29.3 -6.8 0.1 4 4 A G - 0 0 63 -2,-0.3 2,-0.3 0, 0.0 0, 0.0 -0.903 26.2-153.0 169.9 165.0 -25.9 -8.5 0.4 5 5 A S + 0 0 126 -2,-0.3 2,-0.2 0, 0.0 -2,-0.0 -0.888 20.4 154.6-162.6 127.5 -22.2 -8.2 -0.2 6 6 A S + 0 0 137 -2,-0.3 2,-0.4 2,-0.0 0, 0.0 -0.650 14.8 146.7-159.6 94.2 -19.5 -10.8 -0.7 7 7 A G - 0 0 78 -2,-0.2 2,-0.2 2,-0.1 0, 0.0 -0.960 22.7-165.1-138.0 117.3 -16.3 -9.9 -2.6 8 8 A E + 0 0 206 -2,-0.4 2,-0.1 2,-0.0 -2,-0.0 -0.578 34.7 97.9 -97.5 161.8 -12.9 -11.3 -1.9 9 9 A G - 0 0 39 -2,-0.2 -2,-0.1 3,-0.1 0, 0.0 -0.309 29.5-173.4 132.7 144.4 -9.6 -10.1 -3.1 10 10 A Y S > S+ 0 0 77 -2,-0.1 4,-2.5 3,-0.1 5,-0.3 0.611 80.5 55.5-126.2 -63.1 -6.7 -7.9 -1.9 11 11 A E H > S+ 0 0 49 1,-0.2 4,-4.5 2,-0.2 5,-0.3 0.900 107.2 55.3 -40.7 -56.8 -4.1 -7.3 -4.7 12 12 A Q H > S+ 0 0 142 2,-0.2 4,-2.9 1,-0.2 -1,-0.2 0.928 112.6 40.6 -41.9 -66.0 -6.8 -5.9 -6.9 13 13 A D H > S+ 0 0 93 2,-0.2 4,-2.9 1,-0.2 3,-0.3 0.961 118.8 45.8 -47.8 -67.4 -7.9 -3.3 -4.4 14 14 A F H X S+ 0 0 2 -4,-2.5 4,-3.1 1,-0.3 5,-0.4 0.903 110.9 53.6 -41.5 -57.5 -4.4 -2.5 -3.3 15 15 A A H X S+ 0 0 38 -4,-4.5 4,-2.8 -5,-0.3 -1,-0.3 0.910 110.8 46.9 -44.7 -52.5 -3.3 -2.3 -6.9 16 16 A V H X S+ 0 0 77 -4,-2.9 4,-3.5 -5,-0.3 -1,-0.3 0.915 115.4 47.3 -56.7 -46.0 -6.1 0.1 -7.6 17 17 A L H X S+ 0 0 35 -4,-2.9 4,-3.9 2,-0.2 5,-0.2 0.993 110.9 47.8 -58.2 -68.6 -5.1 2.1 -4.4 18 18 A T H X S+ 0 0 15 -4,-3.1 4,-4.1 2,-0.2 -1,-0.2 0.859 117.8 45.5 -38.9 -48.1 -1.4 2.2 -5.1 19 19 A A H X S+ 0 0 46 -4,-2.8 4,-2.9 -5,-0.4 5,-0.3 0.994 113.6 45.1 -60.6 -67.0 -2.3 3.3 -8.6 20 20 A E H X S+ 0 0 104 -4,-3.5 4,-1.9 1,-0.2 -2,-0.2 0.817 119.3 47.5 -46.0 -35.0 -4.9 5.9 -7.7 21 21 A I H X S+ 0 0 1 -4,-3.9 4,-3.4 -5,-0.3 5,-0.3 0.989 107.7 50.9 -70.7 -63.7 -2.4 7.0 -5.0 22 22 A T H X S+ 0 0 47 -4,-4.1 4,-1.7 1,-0.3 -2,-0.2 0.869 112.8 49.4 -39.6 -49.9 0.7 7.2 -7.2 23 23 A S H >X S+ 0 0 54 -4,-2.9 4,-0.9 1,-0.2 3,-0.8 0.954 111.6 46.4 -56.3 -55.0 -1.3 9.3 -9.6 24 24 A K H >X S+ 0 0 51 -4,-1.9 4,-1.6 -5,-0.3 3,-0.5 0.849 109.2 57.3 -56.1 -35.6 -2.5 11.6 -6.9 25 25 A I H 3< S+ 0 0 3 -4,-3.4 -1,-0.3 1,-0.3 -2,-0.2 0.846 106.7 47.7 -63.7 -34.7 1.0 11.7 -5.7 26 26 A A H << S+ 0 0 56 -4,-1.7 -1,-0.3 -3,-0.8 -2,-0.2 0.596 112.7 50.7 -80.4 -12.4 2.0 13.0 -9.1 27 27 A R H X< S+ 0 0 137 -4,-0.9 3,-1.8 -3,-0.5 -2,-0.2 0.640 89.8 78.8 -96.1 -20.3 -0.8 15.4 -8.8 28 28 A V G >< S+ 0 0 0 -4,-1.6 3,-1.6 1,-0.3 -2,-0.2 0.928 98.1 43.8 -51.8 -50.8 0.3 16.7 -5.4 29 29 A P G 3 S+ 0 0 38 0, 0.0 -1,-0.3 0, 0.0 -2,-0.1 0.430 118.3 48.1 -75.0 1.3 2.9 18.8 -7.0 30 30 A R G < S+ 0 0 205 -3,-1.8 -2,-0.2 2,-0.1 -3,-0.1 0.105 98.3 88.5-125.2 17.1 0.3 19.8 -9.6 31 31 A L S < S- 0 0 39 -3,-1.6 6,-0.0 1,-0.1 -3,-0.0 -0.820 77.9-105.9-117.2 157.2 -2.5 20.6 -7.1 32 32 A P > - 0 0 63 0, 0.0 4,-3.3 0, 0.0 3,-0.3 -0.209 33.2-106.2 -75.0 169.3 -3.3 23.8 -5.3 33 33 A P T 4 S+ 0 0 103 0, 0.0 4,-0.2 0, 0.0 5,-0.0 0.433 121.9 55.5 -75.1 1.1 -2.7 24.6 -1.6 34 34 A D T 4 S+ 0 0 143 3,-0.1 4,-0.4 2,-0.1 -3,-0.0 0.723 121.0 25.0-100.8 -32.0 -6.4 24.1 -1.1 35 35 A E T > S+ 0 0 110 -3,-0.3 4,-2.8 2,-0.1 5,-0.1 0.626 118.5 61.5-104.0 -22.2 -6.6 20.7 -2.6 36 36 A K H X S+ 0 0 31 -4,-3.3 4,-4.6 2,-0.2 5,-0.4 0.978 98.0 54.9 -67.7 -58.5 -3.0 19.7 -2.0 37 37 A K H 4 S+ 0 0 161 1,-0.3 4,-0.5 -5,-0.2 -1,-0.2 0.890 118.2 37.1 -39.5 -54.0 -3.2 20.0 1.8 38 38 A Q H >> S+ 0 0 130 -4,-0.4 4,-3.6 2,-0.2 3,-1.1 0.924 117.0 52.4 -66.2 -46.7 -6.1 17.6 1.7 39 39 A M H 3X S+ 0 0 18 -4,-2.8 4,-2.6 1,-0.3 5,-0.3 0.927 104.1 55.1 -54.5 -50.6 -4.6 15.5 -1.1 40 40 A V H 3< S+ 0 0 20 -4,-4.6 4,-0.3 1,-0.2 -1,-0.3 0.718 117.2 40.0 -56.3 -20.1 -1.4 15.1 0.8 41 41 A A H <> S+ 0 0 47 -3,-1.1 4,-1.5 -4,-0.5 -2,-0.3 0.798 107.2 59.7 -95.9 -39.0 -3.7 13.8 3.5 42 42 A N H X S+ 0 0 77 -4,-3.6 4,-2.1 1,-0.3 -2,-0.2 0.833 108.1 48.3 -57.9 -33.3 -6.0 11.8 1.2 43 43 A V H X S+ 0 0 1 -4,-2.6 4,-2.0 -5,-0.2 -1,-0.3 0.807 102.5 62.3 -75.9 -31.5 -2.9 9.9 0.2 44 44 A E H > S+ 0 0 95 -4,-0.3 4,-1.9 -5,-0.3 -2,-0.2 0.821 110.2 41.0 -62.3 -32.3 -1.9 9.4 3.8 45 45 A K H X S+ 0 0 113 -4,-1.5 4,-3.4 2,-0.2 5,-0.3 0.964 114.3 47.5 -78.7 -60.2 -5.2 7.4 4.2 46 46 A Q H X S+ 0 0 38 -4,-2.1 4,-0.7 1,-0.2 -2,-0.2 0.778 115.0 52.7 -51.4 -28.1 -5.2 5.5 1.0 47 47 A L H >X S+ 0 0 3 -4,-2.0 4,-2.2 2,-0.2 3,-1.7 0.987 111.5 40.0 -71.4 -63.7 -1.6 4.7 1.9 48 48 A E H 3X S+ 0 0 106 -4,-1.9 4,-1.6 1,-0.3 -2,-0.2 0.827 112.0 60.3 -54.3 -33.9 -2.1 3.4 5.4 49 49 A E H 3< S+ 0 0 89 -4,-3.4 4,-0.4 1,-0.2 -1,-0.3 0.781 111.4 39.2 -64.9 -27.6 -5.2 1.7 4.1 50 50 A A H S+ 0 0 16 -4,-0.4 4,-4.6 1,-0.3 5,-0.4 0.973 100.9 50.0 -54.9 -61.5 -3.0 -4.9 2.9 54 54 A L H X S+ 0 0 11 -4,-1.9 4,-1.6 1,-0.3 -1,-0.3 0.807 114.1 49.7 -47.2 -31.9 0.7 -5.8 2.4 55 55 A E H X S+ 0 0 125 -4,-1.1 4,-2.4 -5,-0.2 -1,-0.3 0.919 115.7 39.5 -73.9 -46.5 0.4 -7.0 6.0 56 56 A Q H < S+ 0 0 84 -4,-3.1 4,-0.4 2,-0.2 -2,-0.2 0.911 116.7 50.6 -68.9 -44.5 -2.7 -9.1 5.5 57 57 A M H X S+ 0 0 0 -4,-4.6 4,-3.5 1,-0.2 3,-0.3 0.883 117.4 39.9 -60.2 -41.1 -1.5 -10.3 2.1 58 58 A D H X S+ 0 0 59 -4,-1.6 4,-1.0 -5,-0.4 -1,-0.2 0.842 112.8 54.8 -76.2 -35.6 1.9 -11.3 3.6 59 59 A L H < S+ 0 0 94 -4,-2.4 -1,-0.2 1,-0.2 4,-0.2 0.501 119.2 37.2 -74.7 -3.5 0.2 -12.6 6.7 60 60 A E H >> S+ 0 0 63 -4,-0.4 4,-2.0 -3,-0.3 3,-1.2 0.762 104.0 62.0-110.9 -51.8 -1.9 -14.7 4.3 61 61 A V H 3< S+ 0 0 0 -4,-3.5 -3,-0.2 1,-0.3 -2,-0.2 0.749 98.2 67.7 -48.5 -24.1 0.5 -15.7 1.6 62 62 A R T 3< S+ 0 0 189 -4,-1.0 -1,-0.3 1,-0.2 -2,-0.1 0.952 103.5 38.8 -61.8 -52.5 2.3 -17.4 4.4 63 63 A E T <4 S+ 0 0 142 -3,-1.2 -2,-0.2 -4,-0.2 -1,-0.2 0.820 96.5 105.7 -67.3 -32.1 -0.5 -19.9 5.0 64 64 A I S < S- 0 0 33 -4,-2.0 -3,-0.0 1,-0.1 -4,-0.0 -0.154 78.8-111.3 -50.0 142.2 -0.9 -20.2 1.2 65 65 A P >> - 0 0 67 0, 0.0 4,-3.5 0, 0.0 3,-1.1 -0.265 20.4-111.4 -75.0 164.6 0.6 -23.4 -0.2 66 66 A P T 34 S+ 0 0 129 0, 0.0 4,-0.1 0, 0.0 -2,-0.1 0.429 118.4 60.6 -74.9 1.4 3.6 -23.6 -2.4 67 67 A Q T 34 S+ 0 0 191 2,-0.1 -3,-0.0 3,-0.1 0, 0.0 0.585 118.3 24.7-100.6 -16.8 1.3 -24.6 -5.2 68 68 A S T <> S+ 0 0 74 -3,-1.1 4,-0.5 -7,-0.1 -4,-0.1 0.687 99.8 82.3-114.1 -38.0 -0.7 -21.4 -5.0 69 69 A R H X + 0 0 98 -4,-3.5 4,-1.7 2,-0.1 3,-0.2 0.761 69.5 122.0 -39.4 -29.5 1.8 -19.0 -3.6 70 70 A G H 4 S+ 0 0 46 1,-0.2 2,-3.6 2,-0.2 -3,-0.1 0.066 81.1 2.8 -36.9 145.9 2.9 -18.8 -7.2 71 71 A M H > S+ 0 0 152 1,-0.2 4,-3.1 4,-0.0 5,-0.3 -0.281 117.3 80.5 69.3 -59.1 2.8 -15.3 -8.6 72 72 A Y H X S+ 0 0 27 -2,-3.6 4,-3.8 -4,-0.5 -1,-0.2 0.849 95.5 46.8 -42.9 -43.2 1.7 -14.0 -5.3 73 73 A S H X S+ 0 0 46 -4,-1.7 4,-2.1 2,-0.2 5,-0.3 0.993 109.7 48.7 -64.0 -64.8 5.3 -14.1 -4.2 74 74 A N H > S+ 0 0 122 1,-0.2 4,-1.2 2,-0.2 -2,-0.2 0.827 119.0 44.8 -43.9 -36.3 6.8 -12.5 -7.3 75 75 A R H X S+ 0 0 126 -4,-3.1 4,-2.6 2,-0.2 3,-0.4 0.948 102.2 62.4 -74.0 -52.5 4.2 -9.9 -6.7 76 76 A M H X S+ 0 0 11 -4,-3.8 4,-2.1 1,-0.3 -2,-0.2 0.840 106.6 48.2 -39.7 -44.1 4.7 -9.6 -3.0 77 77 A R H X S+ 0 0 179 -4,-2.1 4,-2.3 2,-0.2 -1,-0.3 0.915 112.6 48.0 -65.1 -45.3 8.2 -8.3 -3.8 78 78 A S H X S+ 0 0 76 -4,-1.2 4,-2.7 -3,-0.4 -2,-0.2 0.979 111.0 49.4 -58.6 -61.0 6.9 -5.9 -6.4 79 79 A Y H X S+ 0 0 19 -4,-2.6 4,-3.9 1,-0.2 5,-0.2 0.923 110.5 49.8 -42.3 -63.7 4.2 -4.4 -4.2 80 80 A K H X S+ 0 0 69 -4,-2.1 4,-2.9 1,-0.2 5,-0.4 0.910 110.2 51.9 -41.9 -56.5 6.5 -3.9 -1.3 81 81 A Q H X S+ 0 0 114 -4,-2.3 4,-1.9 1,-0.2 -1,-0.2 0.927 117.5 37.7 -46.4 -56.7 8.9 -2.2 -3.6 82 82 A E H X S+ 0 0 99 -4,-2.7 4,-3.6 2,-0.2 5,-0.3 0.975 115.6 53.2 -60.4 -59.2 6.2 0.1 -4.9 83 83 A M H X S+ 0 0 3 -4,-3.9 4,-1.7 1,-0.3 5,-0.2 0.913 111.5 44.3 -39.5 -67.4 4.5 0.6 -1.6 84 84 A G H < S+ 0 0 36 -4,-2.9 4,-0.3 1,-0.3 -1,-0.3 0.859 115.4 50.3 -47.6 -41.6 7.6 1.7 0.2 85 85 A K H >X S+ 0 0 112 -4,-1.9 4,-2.9 -5,-0.4 3,-2.6 0.907 102.4 59.6 -64.4 -43.3 8.4 3.9 -2.8 86 86 A L H 3X S+ 0 0 1 -4,-3.6 4,-1.3 1,-0.3 -1,-0.2 0.836 100.2 57.4 -53.3 -34.5 4.9 5.3 -2.7 87 87 A E H 3< S+ 0 0 80 -4,-1.7 4,-0.4 -5,-0.3 -1,-0.3 0.652 116.4 36.3 -70.8 -15.6 5.9 6.5 0.8 88 88 A T H X> S+ 0 0 42 -3,-2.6 4,-3.0 -4,-0.3 3,-1.0 0.868 114.2 48.6 -98.9 -62.2 8.7 8.3 -0.8 89 89 A D H 3< S+ 0 0 71 -4,-2.9 -3,-0.2 1,-0.3 -2,-0.2 0.769 110.3 60.1 -50.6 -26.2 7.5 9.6 -4.1 90 90 A F T >X S+ 0 0 8 -4,-1.3 4,-1.5 -5,-0.5 3,-0.7 0.912 110.7 36.1 -68.8 -45.0 4.6 10.8 -1.9 91 91 A K H <> S+ 0 0 103 -3,-1.0 4,-0.8 -4,-0.4 -2,-0.2 0.751 113.0 60.3 -78.5 -26.1 6.8 13.0 0.2 92 92 A R H 3< S+ 0 0 170 -4,-3.0 -1,-0.2 1,-0.2 -2,-0.2 0.377 109.2 45.4 -81.2 4.2 8.9 13.8 -2.8 93 93 A S H X4 S+ 0 0 12 -3,-0.7 3,-1.2 -5,-0.3 -2,-0.2 0.694 108.1 51.1-112.8 -37.8 5.8 15.3 -4.3 94 94 A R H 3< S+ 0 0 121 -4,-1.5 -2,-0.2 1,-0.3 -3,-0.1 0.600 99.7 68.3 -76.6 -12.2 4.4 17.3 -1.4 95 95 A I T 3< S+ 0 0 116 -4,-0.8 2,-0.6 -5,-0.1 -1,-0.3 0.317 76.6 111.1 -87.4 7.0 7.8 18.9 -1.1 96 96 A A < - 0 0 16 -3,-1.2 2,-0.4 1,-0.1 -3,-0.1 -0.744 50.3-168.5 -87.3 122.9 7.1 20.6 -4.4 97 97 A S - 0 0 125 -2,-0.6 3,-0.2 0, 0.0 -1,-0.1 -0.478 66.9 -47.6-108.2 58.5 6.7 24.3 -4.1 98 98 A G S S- 0 0 41 -2,-0.4 -2,-0.0 1,-0.2 0, 0.0 -0.972 114.4 -14.2 122.9-132.8 5.4 25.0 -7.6 99 99 A P S S- 0 0 122 0, 0.0 -1,-0.2 0, 0.0 -3,-0.0 0.912 71.1-171.7 -75.1 -45.8 6.9 23.7 -10.9 100 100 A S - 0 0 85 -3,-0.2 2,-0.2 1,-0.1 -2,-0.1 0.951 14.0-148.3 47.7 87.3 10.2 22.6 -9.4 101 101 A S 0 0 122 1,-0.1 -1,-0.1 0, 0.0 0, 0.0 -0.526 360.0 360.0 -84.8 152.3 12.2 21.7 -12.5 102 102 A G 0 0 130 -2,-0.2 -1,-0.1 0, 0.0 -2,-0.0 -0.771 360.0 360.0 118.5 360.0 14.8 19.0 -12.5