==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-MAR-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 08-JAN-12 3VEJ . COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN MDY2; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR J.W.CHARTRON,D.G.VANDERVELDE,M.RAO,W.M.CLEMONS JR. . 81 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5636.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 75.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 48 59.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 173 A V 0 0 80 0, 0.0 2,-0.5 0, 0.0 32,-0.1 0.000 360.0 360.0 360.0 112.3 -2.0 28.9 -4.2 2 174 A D > - 0 0 64 1,-0.2 3,-1.6 2,-0.1 34,-0.0 -0.556 360.0-158.6 -73.2 114.2 -4.4 26.8 -2.1 3 175 A L T 3 S+ 0 0 148 -2,-0.5 -1,-0.2 1,-0.3 4,-0.1 0.472 84.9 78.8 -78.5 -2.2 -4.8 28.7 1.2 4 176 A T T 3 S+ 0 0 99 2,-0.1 -1,-0.3 3,-0.0 -2,-0.1 0.698 77.4 88.9 -67.6 -21.9 -5.9 25.6 3.0 5 177 A V S < S- 0 0 2 -3,-1.6 2,-2.4 1,-0.1 3,-0.2 -0.648 92.3-124.3 -73.1 130.6 -2.1 24.9 3.0 6 178 A P > + 0 0 16 0, 0.0 4,-2.3 0, 0.0 5,-0.2 -0.400 45.2 162.9 -82.3 71.3 -0.8 26.5 6.2 7 179 A W H > S+ 0 0 15 -2,-2.4 4,-2.7 1,-0.2 5,-0.2 0.867 70.2 53.8 -61.7 -39.9 1.8 28.7 4.6 8 180 A D H > S+ 0 0 131 -3,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.920 110.4 47.1 -64.1 -40.1 2.3 31.0 7.6 9 181 A D H > S+ 0 0 91 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.895 110.9 52.4 -68.1 -36.0 3.0 28.1 9.8 10 182 A I H X S+ 0 0 0 -4,-2.3 4,-2.7 1,-0.2 -2,-0.2 0.938 107.9 52.3 -61.7 -42.4 5.4 26.7 7.2 11 183 A E H X S+ 0 0 86 -4,-2.7 4,-2.6 1,-0.2 -2,-0.2 0.913 107.5 50.9 -60.7 -41.6 7.2 30.0 7.2 12 184 A A H X S+ 0 0 63 -4,-2.1 4,-1.9 1,-0.2 -1,-0.2 0.909 110.4 49.8 -62.9 -39.7 7.6 30.0 11.0 13 185 A L H X S+ 0 0 32 -4,-2.1 4,-2.6 1,-0.2 -2,-0.2 0.928 111.3 48.6 -62.8 -44.3 9.1 26.5 10.8 14 186 A L H X S+ 0 0 0 -4,-2.7 4,-2.6 2,-0.2 6,-0.2 0.894 106.0 57.5 -63.1 -41.1 11.5 27.6 8.1 15 187 A K H <>S+ 0 0 74 -4,-2.6 5,-3.2 1,-0.2 6,-0.3 0.935 111.2 42.9 -56.9 -43.8 12.5 30.7 10.1 16 188 A N H ><5S+ 0 0 131 -4,-1.9 3,-1.5 1,-0.2 -2,-0.2 0.955 114.5 49.6 -65.0 -47.1 13.6 28.4 12.9 17 189 A N H 3<5S+ 0 0 65 -4,-2.6 -2,-0.2 1,-0.3 -1,-0.2 0.819 112.6 47.8 -63.7 -31.2 15.3 25.8 10.7 18 190 A F T ><5S- 0 0 33 -4,-2.6 3,-1.8 -5,-0.2 -1,-0.3 0.019 116.4-106.9-102.4 25.6 17.3 28.5 8.8 19 191 A E T < 5S- 0 0 175 -3,-1.5 -3,-0.2 1,-0.3 3,-0.1 0.856 72.7 -61.4 58.3 35.3 18.5 30.4 11.9 20 192 A N T 3 - 0 0 77 -3,-1.8 4,-2.4 -6,-0.3 -1,-0.2 -0.641 25.3-162.9 -77.2 106.8 17.8 34.0 7.9 22 194 A Q H > S+ 0 0 140 -2,-0.8 4,-2.7 1,-0.2 5,-0.2 0.880 87.4 53.6 -58.1 -42.9 15.3 36.2 6.0 23 195 A A H > S+ 0 0 64 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.901 110.9 45.5 -62.4 -41.5 17.0 35.6 2.6 24 196 A A H > S+ 0 0 21 2,-0.2 4,-2.4 1,-0.2 5,-0.2 0.913 112.0 50.7 -67.6 -45.6 16.8 31.8 3.1 25 197 A V H X S+ 0 0 10 -4,-2.4 4,-2.9 1,-0.2 5,-0.3 0.940 112.0 48.8 -58.5 -43.9 13.2 31.9 4.3 26 198 A R H X S+ 0 0 159 -4,-2.7 4,-2.8 1,-0.2 5,-0.2 0.939 109.6 51.8 -60.4 -47.6 12.3 34.0 1.2 27 199 A Q H X S+ 0 0 131 -4,-2.3 4,-2.0 1,-0.2 -1,-0.2 0.926 115.3 40.9 -55.2 -47.5 14.1 31.7 -1.2 28 200 A V H X S+ 0 0 9 -4,-2.4 4,-2.7 2,-0.2 5,-0.2 0.917 114.9 49.5 -73.1 -42.5 12.3 28.6 0.1 29 201 A M H X S+ 0 0 14 -4,-2.9 4,-2.0 -5,-0.2 5,-0.2 0.894 111.1 51.9 -62.7 -38.8 8.8 30.2 0.5 30 202 A E H X S+ 0 0 116 -4,-2.8 4,-2.5 -5,-0.3 5,-0.2 0.943 113.9 41.5 -60.1 -49.8 9.1 31.6 -3.1 31 203 A R H X S+ 0 0 75 -4,-2.0 4,-2.7 -5,-0.2 5,-0.2 0.888 112.6 54.0 -72.3 -36.5 9.9 28.2 -4.6 32 204 A L H X S+ 0 0 1 -4,-2.7 4,-2.1 1,-0.2 -1,-0.2 0.908 114.7 40.3 -61.8 -42.9 7.4 26.3 -2.6 33 205 A Q H X S+ 0 0 60 -4,-2.0 4,-2.2 -5,-0.2 -2,-0.2 0.873 114.6 51.0 -77.7 -37.3 4.6 28.5 -3.6 34 206 A K H X S+ 0 0 124 -4,-2.5 4,-2.0 -5,-0.2 -2,-0.2 0.951 114.0 47.0 -56.2 -47.7 5.7 28.8 -7.2 35 207 A G H X S+ 0 0 0 -4,-2.7 4,-3.3 -5,-0.2 -2,-0.2 0.901 109.1 53.4 -63.3 -40.7 5.9 25.1 -7.3 36 208 A W H < S+ 0 0 7 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.942 110.7 46.1 -59.6 -48.3 2.5 24.6 -5.7 37 209 A S H < S+ 0 0 77 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.850 117.4 44.8 -64.8 -34.0 0.8 26.8 -8.3 38 210 A L H < S+ 0 0 91 -4,-2.0 -2,-0.2 -5,-0.2 -1,-0.2 0.934 102.3 74.4 -71.8 -50.1 2.6 25.0 -11.1 39 211 A A < 0 0 1 -4,-3.3 34,-0.1 -5,-0.2 38,-0.0 -0.286 360.0 360.0 -68.4 147.8 2.1 21.5 -9.9 40 212 A K 0 0 210 33,-0.0 36,-0.1 36,-0.0 -2,-0.1 -0.821 360.0 360.0-104.7 360.0 -1.2 19.7 -10.2 41 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 42 172 B S 0 0 178 0, 0.0 2,-0.1 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 -4.5 18.8 14.6 -7.5 43 173 B V - 0 0 107 1,-0.1 2,-0.1 2,-0.1 32,-0.0 -0.389 360.0-101.0 -65.1 136.6 15.5 14.7 -5.5 44 174 B D + 0 0 37 31,-0.2 -1,-0.1 1,-0.1 35,-0.1 -0.352 50.5 160.9 -68.9 131.9 15.7 17.6 -3.0 45 175 B L + 0 0 139 -2,-0.1 4,-0.2 -3,-0.1 -1,-0.1 0.467 58.0 75.7-121.0 -9.3 16.4 16.6 0.6 46 176 B T + 0 0 117 2,-0.1 -2,-0.1 3,-0.1 0, 0.0 0.691 69.8 87.8 -90.5 -23.0 17.6 19.8 2.2 47 177 B V S S- 0 0 5 1,-0.1 2,-2.6 -19,-0.0 3,-0.3 -0.560 101.0-105.7 -58.5 143.1 14.3 21.6 2.6 48 178 B P > + 0 0 15 0, 0.0 4,-2.3 0, 0.0 5,-0.2 -0.357 58.6 161.8 -78.1 73.1 13.1 20.3 6.1 49 179 B W H > + 0 0 19 -2,-2.6 4,-2.8 -4,-0.2 5,-0.2 0.858 67.4 54.2 -61.0 -41.1 10.5 18.0 4.5 50 180 B D H > S+ 0 0 132 -3,-0.3 4,-2.1 2,-0.2 -1,-0.2 0.923 110.3 46.7 -64.7 -38.9 10.1 15.8 7.6 51 181 B D H > S+ 0 0 88 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.907 111.6 51.6 -68.4 -39.0 9.3 18.8 9.8 52 182 B I H X S+ 0 0 0 -4,-2.3 4,-2.7 1,-0.2 -2,-0.2 0.934 108.7 52.3 -60.1 -42.3 6.9 20.1 7.2 53 183 B E H X S+ 0 0 82 -4,-2.8 4,-3.0 1,-0.2 -2,-0.2 0.904 107.7 50.4 -62.0 -41.0 5.2 16.8 7.1 54 184 B A H X S+ 0 0 64 -4,-2.1 4,-2.1 2,-0.2 -1,-0.2 0.923 111.0 49.8 -64.4 -40.0 4.8 16.7 10.9 55 185 B L H X S+ 0 0 30 -4,-2.2 4,-2.7 1,-0.2 -2,-0.2 0.941 113.1 46.5 -60.0 -45.5 3.3 20.2 10.7 56 186 B L H X S+ 0 0 0 -4,-2.7 4,-2.7 2,-0.2 6,-0.2 0.899 108.1 55.2 -67.8 -40.1 0.9 19.1 8.0 57 187 B K H <>S+ 0 0 96 -4,-3.0 5,-3.0 -5,-0.2 6,-0.3 0.933 112.5 44.2 -58.9 -41.0 -0.2 16.0 9.8 58 188 B N H ><5S+ 0 0 125 -4,-2.1 3,-1.7 -5,-0.2 -2,-0.2 0.965 114.0 48.6 -64.6 -51.2 -1.1 18.1 12.8 59 189 B N H 3<5S+ 0 0 65 -4,-2.7 -2,-0.2 1,-0.3 -1,-0.2 0.863 110.6 51.5 -58.6 -40.0 -2.9 20.8 10.7 60 190 B F T ><5S- 0 0 29 -4,-2.7 3,-1.3 -5,-0.2 -1,-0.3 0.090 117.4-107.4 -90.1 22.4 -4.9 18.2 8.7 61 191 B E T < 5S- 0 0 178 -3,-1.7 -3,-0.2 1,-0.3 3,-0.1 0.858 72.4 -59.5 59.8 37.0 -6.2 16.3 11.8 62 192 B N T 3 - 0 0 79 -3,-1.3 4,-2.3 -6,-0.3 -1,-0.2 -0.685 23.2-167.1 -81.1 101.7 -5.6 12.7 7.8 64 194 B Q H > S+ 0 0 136 -2,-1.0 4,-2.6 1,-0.2 5,-0.2 0.864 84.1 54.6 -62.7 -39.4 -2.9 10.6 6.1 65 195 B A H > S+ 0 0 67 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.910 110.0 47.0 -62.1 -40.7 -4.5 11.0 2.6 66 196 B A H > S+ 0 0 21 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.919 111.3 50.7 -67.6 -42.5 -4.4 14.8 2.9 67 197 B V H X S+ 0 0 5 -4,-2.3 4,-3.0 1,-0.2 5,-0.3 0.942 111.5 48.7 -59.4 -44.8 -0.8 14.8 4.1 68 198 B R H X S+ 0 0 161 -4,-2.6 4,-2.5 1,-0.2 5,-0.2 0.931 110.9 50.0 -61.5 -46.3 0.3 12.6 1.2 69 199 B Q H X S+ 0 0 133 -4,-2.4 4,-2.1 -5,-0.2 -1,-0.2 0.924 115.2 42.5 -58.9 -45.2 -1.5 14.8 -1.3 70 200 B V H X S+ 0 0 8 -4,-2.5 4,-2.7 2,-0.2 5,-0.2 0.930 114.9 48.7 -72.0 -43.8 0.1 18.0 -0.0 71 201 B M H X S+ 0 0 10 -4,-3.0 4,-2.1 -5,-0.2 5,-0.2 0.886 111.5 51.4 -61.4 -39.6 3.6 16.5 0.4 72 202 B E H X S+ 0 0 107 -4,-2.5 4,-2.6 -5,-0.3 5,-0.2 0.947 113.3 43.7 -61.8 -46.3 3.4 15.0 -3.1 73 203 B R H X S+ 0 0 63 -4,-2.1 4,-2.8 -5,-0.2 5,-0.2 0.886 112.4 51.9 -70.8 -37.2 2.4 18.3 -4.6 74 204 B L H X S+ 0 0 1 -4,-2.7 4,-2.1 2,-0.2 -1,-0.2 0.910 114.9 42.1 -63.6 -43.0 4.9 20.4 -2.7 75 205 B Q H X S+ 0 0 69 -4,-2.1 4,-1.7 -5,-0.2 -2,-0.2 0.873 115.4 48.9 -75.0 -36.6 7.8 18.2 -3.7 76 206 B K H X S+ 0 0 94 -4,-2.6 4,-2.3 -5,-0.2 -2,-0.2 0.952 113.6 48.2 -61.6 -47.3 6.7 17.9 -7.3 77 207 B G H X S+ 0 0 0 -4,-2.8 4,-2.4 1,-0.2 -2,-0.2 0.887 105.7 57.4 -60.8 -40.5 6.3 21.6 -7.4 78 208 B W H < S+ 0 0 19 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.929 110.4 44.6 -57.0 -43.0 9.7 22.2 -5.9 79 209 B S H >< S+ 0 0 82 -4,-1.7 3,-1.0 1,-0.2 -1,-0.2 0.890 114.6 47.8 -68.2 -40.5 11.3 20.2 -8.7 80 210 B L H 3< S+ 0 0 95 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.805 107.2 57.2 -70.1 -29.6 9.2 21.9 -11.4 81 211 B A T 3< 0 0 9 -4,-2.4 -1,-0.2 -5,-0.2 -2,-0.2 0.250 360.0 360.0 -88.0 13.8 9.9 25.4 -10.2 82 212 B K < 0 0 96 -3,-1.0 -1,-0.2 -5,-0.1 -2,-0.2 0.285 360.0 360.0-165.9 360.0 13.7 25.1 -10.4