==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-APR-04 1VG5 . COMPND 2 MOLECULE: RHOMBOID FAMILY PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR H.ONUKI,Y.DOI-KATAYAMA,F.HAYASHI,H.HIROTA,S.YOKOYAMA,RIKEN . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6401.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 45.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 31.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 137 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-143.2 -10.9 4.6 -35.9 2 2 A S - 0 0 117 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.907 360.0-169.7-108.7 130.4 -8.9 2.1 -34.0 3 3 A S - 0 0 124 -2,-0.5 -1,-0.1 1,-0.2 0, 0.0 0.669 28.8-175.2 -87.3 -20.4 -9.0 1.9 -30.2 4 4 A G + 0 0 54 1,-0.0 -1,-0.2 2,-0.0 0, 0.0 -0.166 30.3 121.9 57.8-152.4 -6.1 -0.5 -30.1 5 5 A S + 0 0 127 1,-0.1 2,-0.1 0, 0.0 -2,-0.1 0.794 23.9 157.0 62.4 117.2 -5.0 -1.9 -26.8 6 6 A S + 0 0 132 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.453 35.2 68.9-173.8 90.8 -5.1 -5.7 -26.5 7 7 A G + 0 0 61 -2,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.589 28.5 133.7-165.8-130.3 -3.0 -7.5 -23.9 8 8 A S + 0 0 127 -2,-0.2 2,-0.3 1,-0.1 3,-0.1 0.683 29.3 159.5 62.7 128.6 -2.9 -8.0 -20.2 9 9 A R + 0 0 225 1,-0.3 -1,-0.1 0, 0.0 0, 0.0 -0.912 42.2 28.5-175.8 149.7 -2.5 -11.5 -18.8 10 10 A Q + 0 0 201 -2,-0.3 -1,-0.3 1,-0.2 -2,-0.1 0.960 67.3 174.1 54.7 91.0 -1.4 -13.3 -15.7 11 11 A A - 0 0 71 -3,-0.1 2,-1.3 2,-0.0 -1,-0.2 -0.964 40.4-107.7-130.3 146.2 -2.1 -11.0 -12.8 12 12 A P + 0 0 135 0, 0.0 2,-0.3 0, 0.0 3,-0.0 -0.591 48.7 175.3 -75.0 95.4 -1.9 -11.4 -9.0 13 13 A I + 0 0 144 -2,-1.3 -2,-0.0 2,-0.1 -3,-0.0 -0.807 44.3 13.5-104.8 145.0 -5.5 -11.5 -8.0 14 14 A A S S- 0 0 96 -2,-0.3 2,-0.1 2,-0.1 0, 0.0 0.452 91.7 -82.6 68.9 144.6 -6.8 -12.2 -4.5 15 15 A N - 0 0 99 1,-0.1 2,-0.4 47,-0.1 -2,-0.1 -0.357 45.3-106.6 -76.7 159.4 -4.5 -12.1 -1.5 16 16 A A - 0 0 81 36,-0.1 -1,-0.1 -2,-0.1 -2,-0.1 -0.757 32.3-125.1 -91.6 131.6 -2.3 -15.1 -0.5 17 17 A A - 0 0 101 -2,-0.4 2,-0.3 1,-0.0 -1,-0.1 -0.294 22.4-162.1 -70.8 158.5 -3.4 -17.1 2.5 18 18 A V - 0 0 80 -2,-0.0 34,-0.0 5,-0.0 35,-0.0 -0.927 14.4-131.7-149.3 119.1 -1.0 -17.6 5.4 19 19 A L - 0 0 137 -2,-0.3 4,-0.2 1,-0.1 0, 0.0 -0.387 29.9-116.1 -69.4 146.7 -1.3 -20.2 8.1 20 20 A P S S+ 0 0 104 0, 0.0 3,-0.3 0, 0.0 -1,-0.1 -0.105 74.9 21.0 -75.0 177.6 -0.8 -19.1 11.7 21 21 A Q S S+ 0 0 179 1,-0.2 2,-1.3 2,-0.1 0, 0.0 0.177 105.0 50.4 50.6-179.2 2.0 -20.1 14.0 22 22 A S S S+ 0 0 122 2,-0.1 2,-0.8 1,-0.0 -1,-0.2 -0.410 95.7 71.4 60.6 -93.4 5.2 -21.5 12.7 23 23 A Q + 0 0 159 -2,-1.3 -2,-0.1 -3,-0.3 -1,-0.0 -0.370 63.5 124.3 -56.9 100.1 6.0 -18.8 10.2 24 24 A G + 0 0 73 -2,-0.8 2,-0.3 -4,-0.1 -1,-0.1 -0.383 27.6 130.1-163.0 73.3 6.9 -16.0 12.5 25 25 A R - 0 0 221 1,-0.1 -2,-0.0 0, 0.0 0, 0.0 -0.774 61.4 -74.2-125.0 169.7 10.3 -14.4 11.9 26 26 A V S S+ 0 0 127 -2,-0.3 -1,-0.1 1,-0.2 3,-0.1 -0.185 70.8 116.9 -60.2 155.5 11.7 -11.0 11.5 27 27 A A + 0 0 27 1,-0.5 -1,-0.2 29,-0.0 24,-0.1 -0.107 33.5 107.8-180.0 -64.2 11.1 -9.2 8.2 28 28 A A - 0 0 39 19,-0.1 -1,-0.5 1,-0.1 2,-0.3 -0.079 55.8-155.1 -39.6 126.9 9.0 -6.0 8.5 29 29 A S > - 0 0 57 1,-0.1 4,-2.2 -3,-0.1 3,-0.5 -0.868 22.2-131.0-113.9 147.0 11.4 -3.1 8.0 30 30 A E H > S+ 0 0 130 -2,-0.3 4,-2.7 1,-0.2 5,-0.3 0.911 107.7 62.8 -58.2 -45.6 11.0 0.4 9.2 31 31 A E H > S+ 0 0 128 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.864 108.5 43.4 -46.8 -42.3 11.7 1.8 5.8 32 32 A Q H > S+ 0 0 22 -3,-0.5 4,-2.7 2,-0.2 5,-0.4 0.981 107.5 55.3 -68.3 -59.9 8.5 0.0 4.7 33 33 A I H X S+ 0 0 4 -4,-2.2 4,-4.1 1,-0.3 -2,-0.2 0.833 115.6 43.1 -40.9 -39.2 6.4 1.0 7.6 34 34 A Q H X S+ 0 0 92 -4,-2.7 4,-3.6 2,-0.2 5,-0.3 0.900 108.5 55.6 -75.0 -43.7 7.4 4.5 6.7 35 35 A K H < S+ 0 0 112 -4,-2.3 4,-0.3 -5,-0.3 -2,-0.2 0.766 122.4 31.7 -59.5 -25.3 6.9 3.9 3.0 36 36 A L H X>S+ 0 0 1 -4,-2.7 4,-1.1 2,-0.2 5,-1.0 0.855 118.5 50.6 -96.6 -50.4 3.4 2.9 3.9 37 37 A V H <5S+ 0 0 49 -4,-4.1 3,-0.5 -5,-0.4 -3,-0.2 0.851 109.8 54.5 -56.0 -36.1 2.8 5.1 6.9 38 38 A A T <5S+ 0 0 84 -4,-3.6 -1,-0.3 1,-0.2 -3,-0.2 0.879 102.1 56.3 -65.0 -39.2 3.9 8.0 4.8 39 39 A M T 45S- 0 0 122 -4,-0.3 -1,-0.2 -5,-0.3 -2,-0.2 0.729 137.0 -86.2 -64.4 -22.5 1.3 7.0 2.2 40 40 A G T <5S+ 0 0 64 -4,-1.1 -3,-0.2 -3,-0.5 2,-0.2 0.659 86.6 129.9 118.3 37.1 -1.3 7.3 5.0 41 41 A F < - 0 0 34 -5,-1.0 2,-0.5 -8,-0.2 -1,-0.2 -0.668 58.0-106.6-114.5 170.2 -1.2 3.9 6.6 42 42 A D > - 0 0 98 -2,-0.2 4,-2.9 1,-0.1 5,-0.2 -0.852 21.3-130.6-101.5 131.4 -0.9 2.7 10.2 43 43 A R H > S+ 0 0 128 -2,-0.5 4,-3.1 1,-0.2 5,-0.2 0.882 111.3 50.4 -41.1 -51.2 2.3 1.1 11.3 44 44 A T H > S+ 0 0 82 1,-0.2 4,-3.6 2,-0.2 5,-0.3 0.953 109.7 48.3 -53.5 -56.9 0.3 -1.8 12.7 45 45 A Q H > S+ 0 0 65 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.862 112.5 51.1 -52.0 -39.5 -1.6 -2.3 9.5 46 46 A V H X S+ 0 0 0 -4,-2.9 4,-4.3 2,-0.2 -1,-0.2 0.944 113.9 42.8 -63.7 -50.0 1.7 -2.2 7.7 47 47 A E H X S+ 0 0 67 -4,-3.1 4,-2.5 2,-0.2 -2,-0.2 0.967 113.2 50.9 -60.0 -56.8 3.2 -4.8 10.0 48 48 A V H X S+ 0 0 86 -4,-3.6 4,-1.8 2,-0.2 -1,-0.2 0.907 120.3 37.5 -46.5 -49.9 0.1 -7.0 10.0 49 49 A A H X S+ 0 0 1 -4,-2.5 4,-4.2 -5,-0.3 5,-0.4 0.987 110.1 57.5 -66.3 -61.8 0.1 -6.8 6.2 50 50 A L H X>S+ 0 0 1 -4,-4.3 5,-3.8 1,-0.3 4,-1.0 0.781 107.8 54.9 -38.8 -31.3 3.9 -6.9 5.8 51 51 A A H ><5S+ 0 0 69 -4,-2.5 3,-0.8 -5,-0.2 -1,-0.3 0.984 113.3 35.5 -68.0 -60.5 3.5 -10.2 7.7 52 52 A A H 3<5S+ 0 0 41 -4,-1.8 -2,-0.2 1,-0.3 -1,-0.2 0.803 115.8 58.7 -62.9 -29.6 0.9 -11.8 5.4 53 53 A A H 3<5S- 0 0 7 -4,-4.2 -1,-0.3 -5,-0.2 -2,-0.2 0.775 111.4-126.4 -69.6 -27.1 2.8 -10.1 2.6 54 54 A D T <<5S- 0 0 114 -4,-1.0 -3,-0.2 -3,-0.8 -2,-0.1 0.810 74.4 -44.3 82.9 33.7 5.9 -12.0 3.7 55 55 A D S - 0 0 77 -6,-0.5 4,-1.0 -7,-0.2 -1,-0.3 -0.776 34.1-173.6 -97.4 138.9 6.5 -7.7 0.6 57 57 A L H > S+ 0 0 31 -2,-0.4 4,-3.5 2,-0.2 5,-0.4 0.907 85.0 52.6 -92.0 -60.6 5.7 -4.0 0.0 58 58 A T H > S+ 0 0 112 1,-0.2 4,-0.7 2,-0.2 -1,-0.1 0.780 121.1 39.5 -46.2 -29.7 4.0 -4.1 -3.4 59 59 A V H > S+ 0 0 52 2,-0.2 4,-1.9 3,-0.1 -1,-0.2 0.913 113.5 51.4 -85.9 -51.9 1.8 -6.7 -1.7 60 60 A A H >X S+ 0 0 0 -4,-1.0 4,-3.4 1,-0.3 3,-0.8 0.937 106.4 55.8 -49.3 -55.0 1.5 -5.1 1.7 61 61 A V H 3X S+ 0 0 24 -4,-3.5 4,-3.3 1,-0.3 -1,-0.3 0.891 106.1 51.9 -44.2 -48.3 0.5 -1.8 0.1 62 62 A E H 3X S+ 0 0 117 -4,-0.7 4,-2.5 -5,-0.4 -1,-0.3 0.874 112.1 46.1 -57.3 -39.7 -2.3 -3.8 -1.6 63 63 A I H << S+ 0 0 17 -4,-1.9 -2,-0.2 -3,-0.8 -1,-0.2 0.929 111.9 50.1 -68.6 -47.3 -3.3 -5.2 1.8 64 64 A L H >< S+ 0 0 8 -4,-3.4 3,-0.9 1,-0.2 4,-0.3 0.914 113.6 46.7 -56.5 -45.7 -3.1 -1.8 3.4 65 65 A M H 3< S+ 0 0 132 -4,-3.3 2,-0.2 1,-0.3 -1,-0.2 0.916 127.7 27.1 -62.6 -45.9 -5.3 -0.3 0.7 66 66 A S T 3< S+ 0 0 89 -4,-2.5 -1,-0.3 -5,-0.2 -2,-0.2 -0.503 87.6 116.8-116.6 60.0 -7.8 -3.2 0.9 67 67 A Q < + 0 0 57 -3,-0.9 2,-0.9 -2,-0.2 -1,-0.1 0.922 63.9 59.7 -88.5 -57.7 -7.3 -4.2 4.5 68 68 A S S S+ 0 0 116 -4,-0.3 -1,-0.2 -3,-0.2 4,-0.1 -0.661 75.4 176.3 -78.9 105.1 -10.8 -3.5 5.9 69 69 A G - 0 0 39 -2,-0.9 2,-2.8 2,-0.2 -2,-0.0 -0.328 50.0 -71.8 -99.6-176.4 -13.2 -5.7 3.9 70 70 A P S S+ 0 0 147 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 -0.319 107.3 77.6 -75.0 58.2 -16.9 -6.3 4.1 71 71 A S S S- 0 0 107 -2,-2.8 -2,-0.2 1,-0.1 0, 0.0 -0.969 75.2-132.5-163.8 150.5 -16.4 -8.4 7.2 72 72 A S 0 0 136 -2,-0.3 -1,-0.1 1,-0.2 -3,-0.1 0.976 360.0 360.0 -69.6 -58.5 -15.8 -7.9 10.9 73 73 A G 0 0 119 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 -0.654 360.0 360.0 79.8 360.0 -13.0 -10.4 11.3