==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-JUN-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 22-AUG-11 3VGX . COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP160; . SOURCE 2 SYNTHETIC: YES; . AUTHOR X.YAO,S.WALTERSPERGER,M.WANG,S.CUI . 66 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6196.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 83.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 55 83.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 553 C N > 0 0 140 0, 0.0 4,-2.5 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -40.8 25.2 -5.8 9.7 2 554 C N H > + 0 0 120 2,-0.2 4,-2.0 1,-0.2 5,-0.1 0.882 360.0 50.6 -59.4 -36.5 27.9 -6.9 7.3 3 555 C L H > S+ 0 0 136 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.895 109.2 49.6 -70.3 -39.4 25.5 -9.6 6.0 4 556 C L H > S+ 0 0 32 2,-0.2 4,-2.4 1,-0.2 -2,-0.2 0.922 112.5 47.8 -61.7 -44.5 22.7 -7.0 5.6 5 557 C R H X S+ 0 0 155 -4,-2.5 4,-2.1 1,-0.2 -2,-0.2 0.862 110.8 52.5 -65.7 -34.0 25.1 -4.8 3.6 6 558 C A H X S+ 0 0 43 -4,-2.0 4,-2.5 2,-0.2 -2,-0.2 0.929 110.0 46.8 -67.3 -46.2 26.2 -7.7 1.5 7 559 C I H X S+ 0 0 85 -4,-2.5 4,-2.0 2,-0.2 -2,-0.2 0.892 111.1 53.1 -62.6 -40.5 22.6 -8.7 0.6 8 560 C E H X S+ 0 0 78 -4,-2.4 4,-1.4 2,-0.2 -2,-0.2 0.940 112.8 43.2 -57.9 -48.7 21.9 -5.0 -0.2 9 561 C A H X S+ 0 0 51 -4,-2.1 4,-2.0 1,-0.2 -2,-0.2 0.877 111.7 54.4 -66.6 -38.8 24.8 -4.8 -2.6 10 562 C Q H X S+ 0 0 115 -4,-2.5 4,-2.7 1,-0.2 -1,-0.2 0.840 103.5 56.0 -65.9 -33.1 24.1 -8.2 -4.1 11 563 C Q H X S+ 0 0 14 -4,-2.0 4,-2.2 2,-0.2 -1,-0.2 0.887 106.6 50.2 -66.2 -38.6 20.5 -7.1 -4.9 12 564 C H H X S+ 0 0 106 -4,-1.4 4,-1.9 2,-0.2 -2,-0.2 0.899 110.6 50.1 -62.0 -41.0 22.1 -4.2 -6.8 13 565 C L H X S+ 0 0 111 -4,-2.0 4,-2.3 2,-0.2 -2,-0.2 0.930 109.9 50.1 -61.2 -46.5 24.3 -6.7 -8.7 14 566 C L H X S+ 0 0 93 -4,-2.7 4,-2.4 1,-0.2 -1,-0.2 0.905 108.4 52.7 -60.6 -41.7 21.3 -8.9 -9.5 15 567 C Q H X S+ 0 0 63 -4,-2.2 4,-2.3 1,-0.2 -1,-0.2 0.892 108.4 51.0 -63.5 -37.7 19.4 -5.9 -10.8 16 568 C L H X S+ 0 0 113 -4,-1.9 4,-2.2 2,-0.2 -1,-0.2 0.900 109.6 49.5 -64.7 -41.0 22.3 -5.1 -13.1 17 569 C T H X S+ 0 0 75 -4,-2.3 4,-2.5 2,-0.2 -2,-0.2 0.891 109.2 52.8 -68.9 -34.8 22.4 -8.6 -14.4 18 570 C V H X S+ 0 0 23 -4,-2.4 4,-2.5 2,-0.2 -2,-0.2 0.939 108.5 50.2 -61.2 -46.6 18.7 -8.5 -15.1 19 571 C W H X S+ 0 0 159 -4,-2.3 4,-2.1 1,-0.2 -2,-0.2 0.918 112.1 48.8 -53.9 -46.4 19.2 -5.2 -17.1 20 572 C G H X S+ 0 0 20 -4,-2.2 4,-2.2 1,-0.2 -1,-0.2 0.907 110.3 49.1 -64.8 -43.4 21.9 -6.9 -19.1 21 573 C I H X S+ 0 0 72 -4,-2.5 4,-2.5 1,-0.2 -1,-0.2 0.913 110.4 51.3 -64.5 -40.2 19.8 -10.0 -19.8 22 574 C K H X S+ 0 0 83 -4,-2.5 4,-2.1 1,-0.2 -1,-0.2 0.900 109.6 50.5 -63.0 -40.3 16.9 -7.9 -20.9 23 575 C Q H X S+ 0 0 84 -4,-2.1 4,-2.1 -5,-0.2 -1,-0.2 0.920 112.7 46.3 -61.2 -45.3 19.2 -5.9 -23.3 24 576 C L H X S+ 0 0 92 -4,-2.2 4,-2.6 2,-0.2 5,-0.3 0.874 109.3 54.2 -69.0 -37.3 20.6 -9.1 -24.8 25 577 C Q H X S+ 0 0 54 -4,-2.5 4,-2.2 2,-0.2 -1,-0.2 0.930 110.8 45.8 -62.4 -44.9 17.1 -10.7 -25.2 26 578 C A H X S+ 0 0 55 -4,-2.1 4,-2.2 1,-0.2 -2,-0.2 0.908 114.4 49.2 -64.6 -39.5 15.9 -7.7 -27.2 27 579 C R H X S+ 0 0 163 -4,-2.1 4,-1.9 2,-0.2 -2,-0.2 0.910 112.4 45.6 -69.9 -41.6 19.0 -7.6 -29.3 28 580 C I H X S+ 0 0 92 -4,-2.6 4,-2.8 2,-0.2 -1,-0.2 0.909 112.6 52.1 -65.8 -40.7 19.0 -11.3 -30.1 29 581 C L H X S+ 0 0 43 -4,-2.2 4,-2.6 -5,-0.3 -2,-0.2 0.922 108.1 51.9 -61.4 -41.0 15.3 -11.1 -30.9 30 582 C A H X S+ 0 0 58 -4,-2.2 4,-2.2 1,-0.2 -1,-0.2 0.895 111.8 46.5 -62.8 -41.6 16.0 -8.2 -33.2 31 583 C V H X S+ 0 0 85 -4,-1.9 4,-2.4 2,-0.2 -2,-0.2 0.913 110.7 51.8 -65.6 -44.2 18.6 -10.2 -35.1 32 584 C E H X S+ 0 0 108 -4,-2.8 4,-2.0 1,-0.2 -2,-0.2 0.927 112.8 46.0 -58.9 -45.5 16.4 -13.3 -35.3 33 585 C R H X S+ 0 0 148 -4,-2.6 4,-2.8 2,-0.2 -1,-0.2 0.886 109.1 54.8 -64.9 -41.5 13.6 -11.1 -36.8 34 586 C Y H X S+ 0 0 140 -4,-2.2 4,-1.7 1,-0.2 -1,-0.2 0.929 110.8 45.7 -56.1 -46.7 16.0 -9.4 -39.2 35 587 C L H < S+ 0 0 113 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.873 112.5 50.6 -67.6 -37.8 17.1 -12.8 -40.5 36 588 C K H < S+ 0 0 184 -4,-2.0 -1,-0.2 -5,-0.2 -2,-0.2 0.925 111.4 48.4 -62.2 -44.3 13.5 -14.0 -40.8 37 589 C D H < 0 0 126 -4,-2.8 -2,-0.2 1,-0.2 -1,-0.2 0.802 360.0 360.0 -68.5 -30.2 12.6 -10.9 -42.7 38 590 C Q < 0 0 161 -4,-1.7 -1,-0.2 -5,-0.2 -2,-0.2 0.772 360.0 360.0 -78.8 360.0 15.6 -11.2 -45.1 39 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 40 624 D N 0 0 183 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-149.0 9.0 -25.8 -19.5 41 625 D N + 0 0 159 2,-0.0 5,-0.1 5,-0.0 2,-0.1 0.487 360.0 127.0 -78.4 -3.4 6.2 -23.3 -19.3 42 626 D M + 0 0 79 4,-0.1 2,-0.3 3,-0.0 3,-0.0 -0.332 32.4 177.2 -68.2 130.0 8.5 -20.3 -18.8 43 627 D T > - 0 0 79 -2,-0.1 4,-2.6 1,-0.1 5,-0.1 -0.818 42.5-108.5-121.7 166.7 8.0 -17.3 -21.1 44 628 D W H > S+ 0 0 126 -2,-0.3 4,-2.4 1,-0.2 5,-0.1 0.855 119.4 51.6 -68.9 -31.9 9.8 -14.0 -21.1 45 629 D M H > S+ 0 0 163 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.902 112.0 46.2 -70.0 -38.0 6.8 -12.1 -19.9 46 630 D E H > S+ 0 0 54 2,-0.2 4,-2.7 1,-0.2 5,-0.2 0.908 110.7 54.7 -66.7 -40.1 6.4 -14.6 -17.0 47 631 D W H X S+ 0 0 57 -4,-2.6 4,-2.6 1,-0.2 -2,-0.2 0.941 108.4 47.8 -56.6 -49.4 10.1 -14.3 -16.3 48 632 D D H X S+ 0 0 54 -4,-2.4 4,-2.3 1,-0.2 -1,-0.2 0.928 111.4 51.2 -60.0 -44.3 9.7 -10.5 -16.1 49 633 D R H X S+ 0 0 129 -4,-2.1 4,-2.2 1,-0.2 -2,-0.2 0.933 112.4 44.6 -57.3 -49.9 6.8 -10.9 -13.7 50 634 D E H X S+ 0 0 61 -4,-2.7 4,-2.4 1,-0.2 5,-0.3 0.893 111.1 53.7 -67.1 -41.1 8.5 -13.3 -11.4 51 635 D I H X S+ 0 0 42 -4,-2.6 4,-2.3 -5,-0.2 -1,-0.2 0.941 110.9 46.8 -55.0 -48.7 11.7 -11.2 -11.3 52 636 D N H X S+ 0 0 81 -4,-2.3 4,-2.2 -5,-0.2 -2,-0.2 0.892 111.2 51.2 -63.6 -41.1 9.7 -8.1 -10.3 53 637 D N H X S+ 0 0 88 -4,-2.2 4,-1.9 2,-0.2 -1,-0.2 0.910 112.9 44.3 -64.2 -44.4 7.8 -10.0 -7.6 54 638 D Y H X S+ 0 0 150 -4,-2.4 4,-2.5 2,-0.2 -1,-0.2 0.903 112.5 52.9 -67.2 -39.3 11.0 -11.4 -6.0 55 639 D T H X S+ 0 0 23 -4,-2.3 4,-2.2 -5,-0.3 -2,-0.2 0.905 109.3 48.6 -63.7 -40.9 12.8 -8.0 -6.2 56 640 D S H X S+ 0 0 72 -4,-2.2 4,-2.0 2,-0.2 -1,-0.2 0.899 111.6 49.8 -65.1 -42.4 9.9 -6.2 -4.5 57 641 D L H X S+ 0 0 92 -4,-1.9 4,-2.2 2,-0.2 -2,-0.2 0.926 110.7 49.2 -62.6 -44.9 9.8 -8.8 -1.7 58 642 D I H X S+ 0 0 48 -4,-2.5 4,-2.4 1,-0.2 5,-0.2 0.910 107.9 54.3 -63.8 -40.0 13.6 -8.5 -1.2 59 643 D H H X S+ 0 0 90 -4,-2.2 4,-2.1 1,-0.2 -1,-0.2 0.938 110.6 46.7 -57.2 -45.8 13.4 -4.7 -1.0 60 644 D S H X S+ 0 0 61 -4,-2.0 4,-2.7 1,-0.2 -1,-0.2 0.880 112.0 49.8 -62.2 -42.5 10.7 -5.0 1.7 61 645 D L H X S+ 0 0 88 -4,-2.2 4,-1.4 1,-0.2 -1,-0.2 0.882 112.1 47.2 -66.9 -40.2 12.7 -7.6 3.7 62 646 D I H X S+ 0 0 17 -4,-2.4 4,-1.2 2,-0.2 -1,-0.2 0.871 114.5 46.9 -69.3 -39.7 15.9 -5.6 3.6 63 647 D E H X S+ 0 0 123 -4,-2.1 4,-1.1 -5,-0.2 3,-0.5 0.933 108.4 53.6 -68.3 -48.3 14.1 -2.4 4.6 64 648 D E H < S+ 0 0 140 -4,-2.7 3,-0.5 1,-0.3 -1,-0.2 0.862 108.3 52.9 -55.4 -34.2 12.2 -4.1 7.5 65 649 D S H < S+ 0 0 84 -4,-1.4 -1,-0.3 1,-0.2 -2,-0.2 0.844 96.3 64.9 -68.5 -35.1 15.7 -5.2 8.6 66 650 D Q H < 0 0 103 -4,-1.2 -1,-0.2 -3,-0.5 -2,-0.2 0.802 360.0 360.0 -55.4 -29.1 16.9 -1.6 8.5 67 651 D N < 0 0 157 -4,-1.1 -1,-0.3 -3,-0.5 -2,-0.2 0.091 360.0 360.0 -89.7 360.0 14.3 -1.2 11.3