==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION 16-SEP-04 1VMB . COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S6; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; . AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) . 107 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7047.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 80 74.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 34 31.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 28.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 5 A K 0 0 152 0, 0.0 2,-0.2 0, 0.0 68,-0.0 0.000 360.0 360.0 360.0-177.2 36.3 25.0 39.3 2 6 A E - 0 0 87 66,-0.0 2,-0.3 1,-0.0 68,-0.2 -0.517 360.0-126.1 -88.9 155.1 34.2 21.9 38.8 3 7 A R E -A 69 0A 92 66,-2.6 66,-2.0 -2,-0.2 2,-0.4 -0.677 17.5-131.5 -98.3 151.1 34.5 19.6 35.9 4 8 A I E -A 68 0A 5 -2,-0.3 91,-3.1 64,-0.2 2,-0.3 -0.895 26.7-178.7-112.1 131.8 31.6 18.6 33.6 5 9 A Y E -AB 67 94A 12 62,-3.3 62,-2.3 -2,-0.4 2,-0.4 -0.876 19.0-153.7-126.3 151.8 30.8 15.0 32.7 6 10 A E E -AB 66 93A 32 87,-2.7 87,-2.8 -2,-0.3 2,-0.4 -0.980 10.5-172.6-114.1 143.3 28.4 13.0 30.6 7 11 A S E -AB 65 92A 0 58,-2.2 58,-2.5 -2,-0.4 2,-0.5 -0.964 2.0-170.3-134.4 119.9 27.6 9.4 31.4 8 12 A M E +AB 64 91A 24 83,-2.6 83,-2.5 -2,-0.4 2,-0.3 -0.916 8.9 178.9-106.9 131.9 25.5 7.4 29.0 9 13 A F E -AB 63 90A 0 54,-2.4 54,-2.0 -2,-0.5 2,-0.5 -0.988 15.9-149.7-135.1 147.7 24.2 4.0 30.1 10 14 A I E -AB 62 89A 4 79,-2.8 78,-1.7 -2,-0.3 79,-1.1 -0.969 9.7-151.0-122.4 125.4 22.0 1.4 28.3 11 15 A I E -AB 61 87A 0 50,-2.3 50,-2.8 -2,-0.5 76,-0.2 -0.754 30.7-100.4 -97.4 138.4 19.7 -1.0 30.1 12 16 A A > - 0 0 3 74,-2.9 3,-1.5 -2,-0.4 48,-0.2 -0.218 26.4-127.3 -54.5 142.1 18.8 -4.3 28.7 13 17 A P T 3 S+ 0 0 31 0, 0.0 -1,-0.1 0, 0.0 47,-0.1 0.586 102.7 66.3 -75.8 -8.1 15.5 -4.5 27.0 14 18 A N T 3 S+ 0 0 116 72,-0.1 -2,-0.1 2,-0.1 46,-0.0 0.327 77.7 99.8 -93.0 7.1 14.2 -7.5 29.0 15 19 A V S < S- 0 0 10 -3,-1.5 5,-0.1 71,-0.1 -4,-0.0 -0.838 87.5-108.7 -90.1 122.9 14.2 -5.5 32.2 16 20 A P > - 0 0 66 0, 0.0 4,-2.6 0, 0.0 3,-0.5 -0.159 27.7-114.7 -51.3 145.5 10.7 -4.3 33.0 17 21 A E H > S+ 0 0 121 1,-0.3 4,-2.5 2,-0.2 5,-0.2 0.863 114.6 52.2 -61.5 -36.5 10.2 -0.6 32.4 18 22 A E H > S+ 0 0 149 2,-0.2 4,-2.3 1,-0.2 -1,-0.3 0.913 110.6 49.1 -64.5 -36.5 9.5 0.2 36.1 19 23 A E H > S+ 0 0 111 -3,-0.5 4,-2.4 1,-0.2 -2,-0.2 0.886 108.7 54.6 -68.1 -37.5 12.8 -1.6 37.0 20 24 A R H X S+ 0 0 25 -4,-2.6 4,-2.0 2,-0.2 -2,-0.2 0.938 107.6 49.2 -56.1 -47.6 14.5 0.4 34.3 21 25 A E H X S+ 0 0 55 -4,-2.5 4,-2.1 1,-0.2 -2,-0.2 0.922 109.1 52.2 -63.4 -39.1 13.3 3.6 35.9 22 26 A N H X S+ 0 0 79 -4,-2.3 4,-2.0 1,-0.2 -1,-0.2 0.876 106.3 54.0 -60.3 -40.1 14.5 2.4 39.3 23 27 A L H X S+ 0 0 12 -4,-2.4 4,-2.7 2,-0.2 -1,-0.2 0.902 106.3 52.8 -62.7 -42.3 18.0 1.7 37.8 24 28 A V H X S+ 0 0 2 -4,-2.0 4,-2.3 1,-0.2 -1,-0.2 0.942 108.8 49.4 -54.5 -46.4 18.0 5.3 36.5 25 29 A E H X S+ 0 0 90 -4,-2.1 4,-2.2 2,-0.2 -2,-0.2 0.866 108.9 53.3 -62.7 -35.8 17.2 6.5 40.1 26 30 A R H X S+ 0 0 128 -4,-2.0 4,-2.5 1,-0.2 -1,-0.2 0.928 107.8 50.1 -68.4 -42.5 20.0 4.3 41.5 27 31 A V H X S+ 0 0 0 -4,-2.7 4,-2.5 1,-0.2 -2,-0.2 0.926 109.5 51.5 -59.3 -46.4 22.5 5.9 39.0 28 32 A K H X S+ 0 0 48 -4,-2.3 4,-2.6 1,-0.2 -1,-0.2 0.915 110.9 48.4 -54.2 -48.4 21.4 9.4 40.0 29 33 A K H X S+ 0 0 107 -4,-2.2 4,-3.0 2,-0.2 5,-0.5 0.872 108.3 53.6 -64.6 -36.0 21.9 8.5 43.7 30 34 A I H X>S+ 0 0 34 -4,-2.5 5,-2.3 2,-0.2 4,-2.1 0.944 112.0 45.5 -60.9 -47.5 25.4 7.0 43.0 31 35 A I H <>S+ 0 0 0 -4,-2.5 6,-3.1 3,-0.2 5,-0.7 0.939 119.1 42.0 -59.3 -47.9 26.4 10.3 41.3 32 36 A E H <5S+ 0 0 83 -4,-2.6 -2,-0.2 4,-0.2 -3,-0.2 0.932 127.5 26.4 -64.1 -50.4 24.9 12.4 44.1 33 37 A E H <5S+ 0 0 97 -4,-3.0 -3,-0.2 -5,-0.1 -2,-0.2 0.696 134.6 24.1 -93.4 -26.8 26.0 10.5 47.2 34 38 A R T <5S+ 0 0 149 -4,-2.1 -3,-0.2 -5,-0.5 -4,-0.1 0.813 128.9 37.2-111.0 -49.7 29.2 8.6 46.1 35 39 A V T S-C 57 0A 53 3,-2.3 3,-2.5 5,-0.1 5,-0.2 -0.994 83.8 -14.7-123.0 117.7 25.4 -5.8 22.3 55 59 A K T 3 S- 0 0 151 -2,-0.4 3,-0.1 1,-0.3 -1,-0.1 0.872 128.6 -58.1 55.9 38.7 25.3 -8.7 24.9 56 60 A K T 3 S+ 0 0 159 1,-0.2 2,-0.3 2,-0.0 -1,-0.3 0.554 115.0 117.7 67.4 7.8 23.2 -10.5 22.5 57 61 A F E < - C 0 54A 52 -3,-2.5 -3,-2.3 1,-0.1 -1,-0.2 -0.798 52.4-157.4-100.4 152.7 20.5 -7.7 22.5 58 62 A N E S+ 0 0 79 -2,-0.3 -8,-2.6 -5,-0.2 2,-0.3 0.436 78.3 20.1-105.5 -4.9 19.6 -5.7 19.4 59 63 A E E - C 0 49A 65 -10,-0.3 2,-0.3 -5,-0.2 -10,-0.2 -0.958 63.1-176.6-154.6 165.2 18.2 -2.7 21.3 60 64 A G E - C 0 48A 0 -12,-1.9 -12,-2.5 -2,-0.3 2,-0.7 -0.969 35.5 -94.3-164.7 167.4 18.4 -1.1 24.7 61 65 A D E -AC 11 47A 2 -50,-2.8 -50,-2.3 -2,-0.3 2,-0.3 -0.859 42.9-150.6 -99.6 114.1 17.0 1.7 26.8 62 66 A Y E +AC 10 46A 33 -16,-2.5 -16,-1.7 -2,-0.7 -17,-1.5 -0.682 20.6 170.3 -90.6 138.5 19.3 4.8 26.7 63 67 A T E -AC 9 44A 0 -54,-2.0 -54,-2.4 -2,-0.3 2,-0.4 -0.990 11.9-165.1-137.2 140.9 19.8 7.4 29.4 64 68 A V E -AC 8 43A 5 -21,-2.2 -21,-3.1 -2,-0.4 2,-0.5 -0.997 5.5-164.8-122.2 136.5 22.5 10.2 29.5 65 69 A I E -AC 7 42A 0 -58,-2.5 -58,-2.2 -2,-0.4 2,-0.5 -0.988 5.0-156.6-120.9 128.6 23.2 12.1 32.7 66 70 A Y E +AC 6 41A 41 -25,-2.9 -26,-2.8 -2,-0.5 -25,-1.5 -0.917 28.0 157.1-103.0 126.8 25.1 15.4 32.7 67 71 A F E -AC 5 39A 0 -62,-2.3 -62,-3.3 -2,-0.5 2,-0.4 -0.945 32.1-136.4-145.9 167.6 26.8 16.2 36.0 68 72 A R E +AC 4 38A 54 -30,-2.2 -30,-2.6 -2,-0.3 2,-0.3 -0.969 32.2 143.5-129.3 141.8 29.6 18.2 37.6 69 73 A C E -A 3 0A 6 -66,-2.0 -66,-2.6 -2,-0.4 -32,-0.1 -0.937 61.0 -91.6-160.1 179.8 32.1 17.2 40.2 70 74 A D - 0 0 89 -2,-0.3 -66,-0.1 -34,-0.3 -34,-0.1 0.441 57.3-120.1 -82.6 0.4 35.7 17.6 41.2 71 75 A G S S+ 0 0 15 -68,-0.2 3,-0.3 -36,-0.1 -1,-0.0 0.476 86.2 107.2 78.5 7.8 36.7 14.6 39.2 72 76 A Q S S+ 0 0 112 -37,-0.2 3,-0.2 1,-0.2 -1,-0.0 0.658 79.4 37.6 -95.5 -17.7 38.1 12.7 42.3 73 77 A N S > S+ 0 0 52 -38,-0.4 3,-1.6 1,-0.1 4,-0.5 0.030 70.1 122.0-123.8 30.2 35.4 10.1 42.8 74 78 A L T >> + 0 0 46 -3,-0.3 4,-1.8 1,-0.3 3,-1.1 0.786 64.9 72.3 -65.6 -28.0 34.4 9.0 39.3 75 79 A Q H 3> S+ 0 0 89 1,-0.2 4,-3.2 2,-0.2 -1,-0.3 0.780 84.2 69.6 -59.0 -22.6 35.3 5.4 40.1 76 80 A E H <> S+ 0 0 70 -3,-1.6 4,-1.5 2,-0.2 -1,-0.2 0.881 104.2 41.6 -59.2 -40.2 32.2 5.3 42.3 77 81 A L H <> S+ 0 0 2 -3,-1.1 4,-2.3 -4,-0.5 -2,-0.2 0.949 114.0 50.6 -74.6 -45.8 30.1 5.4 39.2 78 82 A E H X S+ 0 0 53 -4,-1.8 4,-2.5 1,-0.2 -2,-0.2 0.917 109.9 51.1 -56.1 -44.4 32.3 3.1 37.2 79 83 A N H X S+ 0 0 82 -4,-3.2 4,-1.0 2,-0.2 -1,-0.2 0.861 106.5 54.0 -65.9 -36.2 32.2 0.6 40.0 80 84 A F H >< S+ 0 0 32 -4,-1.5 3,-0.9 -5,-0.2 4,-0.5 0.959 111.0 46.7 -58.0 -50.7 28.4 0.7 40.2 81 85 A Y H >< S+ 0 0 2 -4,-2.3 3,-1.7 1,-0.2 -2,-0.2 0.935 105.2 60.2 -58.3 -43.2 28.2 -0.0 36.5 82 86 A R H 3< S+ 0 0 167 -4,-2.5 -1,-0.2 1,-0.3 -2,-0.2 0.751 110.0 42.0 -56.1 -26.9 30.7 -2.9 36.8 83 87 A V T << S+ 0 0 111 -4,-1.0 -1,-0.3 -3,-0.9 -2,-0.2 0.389 98.1 81.9-103.2 3.9 28.4 -4.8 39.2 84 88 A T X - 0 0 13 -3,-1.7 3,-1.9 -4,-0.5 -1,-0.1 -0.837 50.4-179.3-117.4 86.4 25.1 -4.2 37.4 85 89 A P T 3 S+ 0 0 98 0, 0.0 -1,-0.1 0, 0.0 -73,-0.1 0.671 77.6 71.9 -63.7 -21.0 24.6 -6.6 34.5 86 90 A E T 3 S+ 0 0 87 1,-0.1 -74,-2.9 -75,-0.1 2,-0.8 0.715 86.0 73.4 -63.4 -26.9 21.2 -5.1 33.6 87 91 A I E < -B 11 0A 6 -3,-1.9 -76,-0.3 -76,-0.2 -3,-0.1 -0.870 67.0-178.8 -87.1 110.7 23.3 -2.2 32.3 88 92 A I E + 0 0 17 -78,-1.7 2,-0.3 -2,-0.8 -77,-0.1 0.628 63.8 12.9 -90.8 -15.8 24.8 -3.7 29.1 89 93 A R E +B 10 0A 111 -79,-1.1 -79,-2.8 -35,-0.1 2,-0.3 -0.964 63.6 167.4-155.9 143.7 26.8 -0.7 28.0 90 94 A W E -B 9 0A 61 -2,-0.3 2,-0.3 -81,-0.2 -81,-0.2 -0.984 8.7-172.3-147.6 165.4 28.0 2.6 29.5 91 95 A Q E -B 8 0A 47 -83,-2.5 -83,-2.6 -2,-0.3 2,-0.4 -0.942 5.5-162.4-156.9 139.9 30.4 5.3 28.7 92 96 A T E +B 7 0A 49 -2,-0.3 2,-0.4 -85,-0.2 -85,-0.2 -0.981 13.5 177.4-131.2 128.2 31.6 8.3 30.7 93 97 A F E -B 6 0A 104 -87,-2.8 -87,-2.7 -2,-0.4 2,-0.4 -0.985 31.6-123.4-133.9 138.4 33.3 11.4 29.3 94 98 A R E -B 5 0A 77 -2,-0.4 2,-1.3 -89,-0.2 -89,-0.3 -0.590 27.7-139.7 -74.3 127.8 34.6 14.6 30.5 95 99 A R >> + 0 0 51 -91,-3.1 4,-1.9 -2,-0.4 3,-0.6 -0.587 32.4 166.0 -95.0 75.3 32.9 17.4 28.5 96 100 A F H 3> S+ 0 0 124 -2,-1.3 4,-2.4 1,-0.2 -1,-0.2 0.814 75.9 61.0 -54.5 -36.3 35.8 19.8 27.9 97 101 A D H 3> S+ 0 0 76 -3,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.897 105.0 47.0 -60.5 -40.9 33.7 21.5 25.3 98 102 A L H <> S+ 0 0 30 -3,-0.6 4,-2.2 2,-0.2 -2,-0.2 0.862 110.4 52.2 -69.7 -38.5 31.0 22.4 27.9 99 103 A E H X S+ 0 0 16 -4,-1.9 4,-2.2 2,-0.2 -2,-0.2 0.951 111.2 47.8 -60.3 -44.0 33.6 23.7 30.3 100 104 A K H X S+ 0 0 138 -4,-2.4 4,-2.2 1,-0.2 -2,-0.2 0.928 110.2 52.6 -61.5 -43.4 35.0 25.9 27.6 101 105 A K H X S+ 0 0 139 -4,-2.1 4,-2.8 1,-0.2 -1,-0.2 0.889 108.6 49.9 -60.0 -43.1 31.5 27.1 26.7 102 106 A E H X S+ 0 0 60 -4,-2.2 4,-2.5 2,-0.2 -1,-0.2 0.902 108.7 51.1 -65.6 -44.6 30.8 28.1 30.3 103 107 A R H X S+ 0 0 144 -4,-2.2 4,-1.5 1,-0.2 -1,-0.2 0.882 112.4 48.9 -57.1 -40.4 34.0 30.0 30.6 104 108 A K H < S+ 0 0 90 -4,-2.2 -2,-0.2 2,-0.2 -1,-0.2 0.920 108.9 51.2 -63.8 -46.8 33.0 31.8 27.4 105 109 A A H < S+ 0 0 62 -4,-2.8 -2,-0.2 1,-0.2 -1,-0.2 0.919 110.7 48.4 -58.5 -42.2 29.4 32.5 28.7 106 110 A Q H < 0 0 140 -4,-2.5 -1,-0.2 -5,-0.1 -2,-0.2 0.805 360.0 360.0 -68.2 -32.7 30.9 34.0 31.9 107 111 A R < 0 0 257 -4,-1.5 -1,-0.1 -5,-0.2 -4,-0.1 -0.569 360.0 360.0 126.4 360.0 33.2 36.0 29.6