==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 22-MAY-96 1VND . COMPND 2 MOLECULE: VND/NK-2 PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; . AUTHOR D.H.H.TSAO,J.M.GRUSCHUS,L.-H.WANG,M.NIRENBERG,J.A.FERRETTI . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6045.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 35 45.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 26 33.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 124 0, 0.0 3,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -53.2 -8.5 10.1 -6.3 2 2 A S + 0 0 62 1,-0.1 13,-1.0 3,-0.0 2,-0.2 0.638 360.0 28.4-107.8 -31.9 -5.3 9.1 -4.5 3 3 A D S S+ 0 0 123 11,-0.1 2,-0.2 9,-0.0 -1,-0.1 -0.650 127.6 32.6-131.3 70.1 -6.6 9.7 -1.0 4 4 A G - 0 0 19 -3,-0.2 10,-0.0 -2,-0.2 0, 0.0 -0.711 57.7-168.8 154.5 159.3 -10.3 9.1 -1.6 5 5 A L - 0 0 52 -2,-0.2 2,-1.2 2,-0.2 -3,-0.0 -0.920 32.2-119.7-163.4 145.4 -12.5 6.9 -3.7 6 6 A P S S+ 0 0 131 0, 0.0 2,-0.2 0, 0.0 -2,-0.0 -0.492 84.2 86.6 -91.8 66.9 -16.4 6.9 -4.5 7 7 A N S S- 0 0 113 -2,-1.2 2,-0.4 0, 0.0 -2,-0.2 -0.814 74.7-122.4-145.5 179.5 -16.9 3.3 -3.1 8 8 A K S S+ 0 0 185 -2,-0.2 3,-0.0 2,-0.1 0, 0.0 -0.879 75.6 81.8-137.6 100.1 -17.6 1.7 0.3 9 9 A K S S+ 0 0 93 -2,-0.4 2,-0.3 67,-0.0 67,-0.0 0.004 89.5 18.4-153.7 -84.5 -15.0 -0.9 1.3 10 10 A R - 0 0 92 64,-0.0 2,-0.2 66,-0.0 -2,-0.1 -0.939 55.2-176.4-149.2 120.0 -11.8 0.4 2.9 11 11 A K S S+ 0 0 51 -2,-0.3 64,-0.0 1,-0.2 3,-0.0 -0.770 74.2 56.2 81.2 55.1 -11.8 3.3 4.1 12 12 A R S S+ 0 0 170 -2,-0.2 -1,-0.2 1,-0.0 2,-0.1 0.324 84.5 166.5 -91.5 124.6 -8.8 4.0 5.1 13 13 A R - 0 0 53 61,-0.1 2,-0.3 62,-0.0 -2,-0.2 -0.295 35.8-148.8 -84.6 169.9 -7.1 3.3 1.7 14 14 A V - 0 0 31 60,-0.7 2,-0.4 -2,-0.1 -11,-0.1 -0.927 18.1-179.4-130.9 135.7 -3.8 3.8 -0.0 15 15 A L - 0 0 61 -13,-1.0 2,-0.2 -2,-0.3 60,-0.0 -0.921 10.1-172.6-138.2 107.6 -4.2 4.3 -3.8 16 16 A F - 0 0 59 -2,-0.4 -2,-0.0 1,-0.1 2,-0.0 -0.644 15.7-120.9-105.3 154.1 -0.8 4.8 -5.5 17 17 A T > - 0 0 99 -2,-0.2 4,-2.5 4,-0.0 3,-0.4 -0.099 43.1 -73.4 -95.4-173.6 0.1 5.8 -9.2 18 18 A K T 4 S+ 0 0 187 1,-0.2 4,-0.2 2,-0.2 -2,-0.0 0.483 125.8 46.5 -75.9 -10.4 2.1 4.1 -12.0 19 19 A A T > S+ 0 0 56 3,-0.1 4,-1.4 2,-0.1 -1,-0.2 0.809 118.5 42.7 -83.2 -41.1 5.7 4.7 -10.7 20 20 A Q H > S+ 0 0 32 -3,-0.4 4,-1.4 2,-0.2 -2,-0.2 0.888 116.2 45.6 -75.8 -44.3 4.8 3.6 -7.1 21 21 A T H X S+ 0 0 65 -4,-2.5 4,-1.3 1,-0.2 -1,-0.2 0.743 110.5 57.7 -73.0 -26.6 2.7 0.5 -8.1 22 22 A Y H > S+ 0 0 134 -5,-0.3 4,-1.2 -4,-0.2 -2,-0.2 0.926 110.3 39.7 -67.6 -52.7 5.4 -0.5 -10.7 23 23 A E H X S+ 0 0 47 -4,-1.4 4,-1.1 2,-0.2 -2,-0.2 0.817 115.6 50.7 -71.9 -35.2 8.3 -0.8 -8.2 24 24 A L H X S+ 0 0 2 -4,-1.4 4,-0.9 2,-0.2 -1,-0.2 0.863 113.6 43.7 -72.2 -41.0 6.3 -2.4 -5.3 25 25 A E H X S+ 0 0 58 -4,-1.3 4,-0.7 2,-0.2 -2,-0.2 0.765 110.2 56.5 -71.4 -31.0 4.8 -5.2 -7.5 26 26 A R H X S+ 0 0 136 -4,-1.2 4,-0.8 1,-0.2 -2,-0.2 0.772 110.9 42.9 -78.6 -26.9 8.2 -5.9 -9.3 27 27 A R H X S+ 0 0 59 -4,-1.1 4,-1.9 2,-0.2 -1,-0.2 0.713 108.6 61.1 -79.0 -27.1 9.9 -6.6 -5.9 28 28 A F H < S+ 0 0 60 -4,-0.9 -2,-0.2 2,-0.2 -3,-0.1 0.680 106.2 47.0 -73.9 -17.8 6.8 -8.7 -4.8 29 29 A R H < S+ 0 0 164 -4,-0.7 -1,-0.2 1,-0.1 -2,-0.2 0.873 123.4 29.7 -83.8 -46.2 7.4 -11.1 -7.8 30 30 A Q H < S+ 0 0 154 -4,-0.8 2,-0.2 2,-0.0 -2,-0.2 0.668 126.9 32.3 -90.9 -24.0 11.2 -11.7 -7.3 31 31 A Q < - 0 0 69 -4,-1.9 3,-0.1 1,-0.1 0, 0.0 -0.765 48.3-161.3-126.5 170.7 11.3 -11.2 -3.4 32 32 A R S S+ 0 0 204 1,-0.4 2,-0.3 -2,-0.2 -1,-0.1 0.583 84.1 17.1-107.1 -41.5 9.2 -11.7 -0.3 33 33 A Y - 0 0 180 -6,-0.1 -1,-0.4 2,-0.0 2,-0.3 -0.903 57.9-160.2-144.5 152.4 11.1 -9.4 2.0 34 34 A L - 0 0 11 -2,-0.3 2,-0.1 -3,-0.1 23,-0.1 -0.964 22.2-134.0-150.4 120.9 13.6 -6.5 1.7 35 35 A S >> - 0 0 74 -2,-0.3 4,-1.7 4,-0.1 3,-1.3 -0.298 31.5 -89.6 -84.4 162.9 15.8 -5.4 4.6 36 36 A A H 3> S+ 0 0 51 1,-0.2 4,-1.4 2,-0.2 5,-0.2 0.628 116.8 54.6 -51.3 -37.0 16.6 -1.8 5.9 37 37 A P H 34 S+ 0 0 115 0, 0.0 -1,-0.2 0, 0.0 4,-0.0 0.808 124.8 28.1 -67.5 -29.2 19.7 -0.7 3.9 38 38 A E H <> S+ 0 0 64 -3,-1.3 4,-0.6 2,-0.1 -2,-0.2 0.555 118.9 56.1-104.4 -17.1 17.8 -1.4 0.6 39 39 A R H X S+ 0 0 46 -4,-1.7 4,-0.9 2,-0.2 -3,-0.2 0.830 110.0 44.8 -83.0 -37.4 14.1 -0.8 1.8 40 40 A E H X S+ 0 0 72 -4,-1.4 4,-0.8 2,-0.2 -1,-0.1 0.672 111.7 54.7 -78.0 -20.9 14.8 2.8 3.0 41 41 A H H > S+ 0 0 136 2,-0.2 4,-0.9 -5,-0.2 -1,-0.2 0.717 106.4 51.3 -81.2 -28.9 16.8 3.4 -0.3 42 42 A L H X S+ 0 0 11 -4,-0.6 4,-1.2 2,-0.2 -2,-0.2 0.741 110.3 49.6 -75.2 -30.6 13.6 2.2 -2.2 43 43 A A H X>S+ 0 0 3 -4,-0.9 5,-2.4 2,-0.2 4,-1.0 0.705 113.7 44.8 -81.6 -27.2 11.5 4.8 -0.2 44 44 A S H <5S+ 0 0 74 -4,-0.8 -2,-0.2 3,-0.2 -1,-0.2 0.694 113.8 51.5 -85.1 -26.1 14.0 7.6 -0.9 45 45 A L H <5S+ 0 0 128 -4,-0.9 -2,-0.2 1,-0.1 -3,-0.2 0.807 123.0 28.2 -75.3 -37.7 14.2 6.5 -4.6 46 46 A I H <5S- 0 0 21 -4,-1.2 -2,-0.2 2,-0.1 -3,-0.2 0.651 112.1-115.0-103.9 -21.5 10.3 6.5 -5.1 47 47 A R T <5 + 0 0 185 -4,-1.0 2,-0.2 1,-0.2 -3,-0.2 0.957 66.0 115.6 83.7 68.7 9.5 9.2 -2.4 48 48 A L < - 0 0 47 -5,-2.4 -1,-0.2 -28,-0.0 -2,-0.1 -0.783 63.6 -83.5-139.8-172.5 7.4 7.7 0.4 49 49 A T > - 0 0 64 -2,-0.2 4,-1.4 1,-0.1 3,-0.4 -0.691 30.1-122.7 -94.6 149.5 7.7 7.1 4.2 50 50 A P H > S+ 0 0 51 0, 0.0 4,-1.2 0, 0.0 -1,-0.1 0.684 110.5 54.1 -58.2 -24.6 9.4 4.0 5.9 51 51 A T H > S+ 0 0 93 2,-0.2 4,-1.4 3,-0.1 5,-0.0 0.752 107.0 47.5 -89.1 -28.4 6.1 3.0 7.7 52 52 A Q H > S+ 0 0 65 -3,-0.4 4,-0.5 2,-0.2 -1,-0.1 0.823 114.0 47.6 -82.5 -31.6 3.8 2.9 4.6 53 53 A V H X S+ 0 0 4 -4,-1.4 4,-1.4 2,-0.2 3,-0.3 0.901 111.9 51.0 -69.2 -43.1 6.4 0.8 2.6 54 54 A K H X S+ 0 0 100 -4,-1.2 4,-0.6 1,-0.2 -2,-0.2 0.890 113.9 42.5 -59.6 -46.3 6.8 -1.7 5.6 55 55 A I H X S+ 0 0 61 -4,-1.4 4,-1.0 2,-0.2 -1,-0.2 0.529 106.0 64.4 -84.4 -6.5 3.0 -2.2 6.1 56 56 A W H X S+ 0 0 23 -4,-0.5 4,-0.9 -3,-0.3 -2,-0.2 0.879 107.5 41.8 -71.8 -43.1 2.5 -2.5 2.2 57 57 A F H < S+ 0 0 19 -4,-1.4 4,-0.4 1,-0.2 -2,-0.2 0.628 113.8 54.6 -79.3 -16.1 4.7 -5.7 2.2 58 58 A Q H < S+ 0 0 75 -4,-0.6 -1,-0.2 2,-0.1 -2,-0.2 0.801 111.3 43.2 -76.3 -38.8 2.9 -6.9 5.5 59 59 A N H < S+ 0 0 8 -4,-1.0 3,-0.3 1,-0.2 -2,-0.2 0.634 106.3 61.3 -87.6 -19.8 -0.6 -6.5 3.9 60 60 A H S < S+ 0 0 19 -4,-0.9 2,-0.6 1,-0.2 4,-0.3 0.714 95.2 62.1 -80.2 -27.0 0.4 -8.2 0.5 61 61 A R S S+ 0 0 154 -4,-0.4 -1,-0.2 1,-0.2 -4,-0.1 -0.416 80.5 101.0 -86.6 50.6 1.3 -11.6 2.2 62 62 A Y S S- 0 0 49 -2,-0.6 -1,-0.2 -3,-0.3 8,-0.1 -0.262 105.5 -84.4-145.1 49.3 -2.3 -12.1 3.5 63 63 A K S S+ 0 0 95 1,-0.1 5,-0.2 6,-0.1 -2,-0.1 0.882 70.9 175.0 57.4 46.9 -4.2 -14.6 1.3 64 64 A T + 0 0 16 -4,-0.3 2,-1.3 1,-0.2 -1,-0.1 0.478 43.0 85.5 -85.6 -20.0 -5.0 -11.6 -0.9 65 65 A K S S+ 0 0 153 2,-0.1 2,-0.2 3,-0.1 -1,-0.2 -0.333 95.3 39.1 -86.2 53.4 -6.9 -12.5 -4.1 66 66 A R S S- 0 0 123 -2,-1.3 0, 0.0 -3,-0.0 0, 0.0 -0.867 101.0 -92.0-177.3 171.8 -10.4 -12.4 -2.5 67 67 A A S S+ 0 0 71 -2,-0.2 2,-1.0 1,-0.1 -3,-0.1 0.214 97.9 101.2 -89.6 16.8 -12.0 -10.1 0.1 68 68 A Q + 0 0 117 -5,-0.2 -1,-0.1 1,-0.1 2,-0.1 -0.804 38.3 129.5 -95.0 83.8 -10.9 -12.4 2.9 69 69 A N + 0 0 4 -2,-1.0 -6,-0.1 1,-0.1 -1,-0.1 -0.687 35.9 179.2-140.1 67.0 -8.0 -10.2 3.8 70 70 A E + 0 0 99 1,-0.1 2,-0.5 -2,-0.1 3,-0.2 0.814 58.0 26.6 -49.6 -60.4 -8.8 -10.1 7.6 71 71 A K S S+ 0 0 143 1,-0.2 -1,-0.1 -9,-0.1 0, 0.0 -0.972 122.8 20.6-118.6 122.8 -6.1 -8.0 9.4 72 72 A G S S+ 0 0 29 -2,-0.5 2,-0.4 1,-0.2 -1,-0.2 0.941 72.5 152.6 86.5 70.9 -4.3 -5.3 7.4 73 73 A Y + 0 0 73 -3,-0.2 2,-0.5 4,-0.1 -1,-0.2 -0.964 17.4 175.9-135.2 111.5 -6.5 -4.5 4.3 74 74 A E S S- 0 0 54 -2,-0.4 2,-0.8 -18,-0.1 -60,-0.7 -0.762 80.2 -46.6-112.6 69.4 -6.3 -1.0 2.9 75 75 A G S S- 0 0 11 -2,-0.5 -64,-0.1 -62,-0.2 -60,-0.1 -0.884 117.9 -31.7 102.9 -99.9 -8.6 -1.5 -0.1 76 76 A H 0 0 94 -2,-0.8 -1,-0.1 -66,-0.0 -3,-0.1 -0.667 360.0 360.0-149.3 85.0 -7.6 -4.8 -1.7 77 77 A P 0 0 15 0, 0.0 -17,-0.2 0, 0.0 -4,-0.1 0.843 360.0 360.0 -83.6 360.0 -3.8 -5.2 -1.1