==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ZINC-BINDING PROTEIN 07-MAY-04 1VYX . COMPND 2 MOLECULE: ORF K3; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8; . AUTHOR R.B.DODD,M.D.ALLEN,S.E.BROWN,C.M.SANDERSON,L.M.DUNCAN, . 60 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4655.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 29 48.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 8.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 18.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M > 0 0 208 0, 0.0 3,-0.7 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 46.7 17.3 -3.8 12.2 2 2 A E T 3 + 0 0 162 1,-0.2 0, 0.0 2,-0.0 0, 0.0 0.612 360.0 87.0 -85.7 -10.6 16.3 -0.5 10.5 3 3 A D T 3 + 0 0 153 3,-0.0 -1,-0.2 0, 0.0 0, 0.0 0.643 66.8 113.3 -63.9 -9.1 12.8 -1.9 9.7 4 4 A E < + 0 0 133 -3,-0.7 -2,-0.0 2,-0.1 0, 0.0 0.194 46.9 60.8 -49.7-175.9 11.8 -0.7 13.2 5 5 A D S S- 0 0 142 1,-0.1 0, 0.0 2,-0.0 0, 0.0 0.278 90.8 -90.2 70.3 153.5 9.2 2.1 13.5 6 6 A V - 0 0 70 10,-0.0 -1,-0.1 12,-0.0 12,-0.1 -0.891 36.0-140.6-106.2 123.6 5.7 1.9 12.1 7 7 A P - 0 0 30 0, 0.0 9,-2.4 0, 0.0 10,-1.1 -0.266 15.7-132.8 -73.1 162.3 5.1 3.0 8.5 8 8 A V E -A 15 0A 44 7,-0.3 2,-0.4 8,-0.1 7,-0.3 -0.950 21.1-106.7-122.7 140.6 1.9 4.9 7.6 9 9 A C E >> -A 14 0A 0 5,-3.3 4,-1.8 -2,-0.4 5,-0.6 -0.445 23.9-148.6 -63.8 118.0 -0.5 4.3 4.7 10 10 A W T 45S+ 0 0 47 22,-0.7 -1,-0.2 19,-0.4 20,-0.1 0.661 91.9 57.6 -64.3 -13.2 0.2 7.2 2.2 11 11 A I T 45S+ 0 0 39 18,-0.1 -1,-0.2 3,-0.1 22,-0.1 0.958 125.6 11.8 -84.0 -57.7 -3.5 7.0 1.1 12 12 A C T 45S- 0 0 60 2,-0.1 -2,-0.2 22,-0.0 -1,-0.1 0.434 100.3-122.8 -99.7 1.8 -5.4 7.5 4.4 13 13 A N T <5 + 0 0 126 -4,-1.8 2,-0.4 1,-0.2 -3,-0.2 0.985 63.6 136.0 57.9 59.9 -2.3 8.6 6.4 14 14 A E E < -A 9 0A 118 -5,-0.6 -5,-3.3 20,-0.0 -1,-0.2 -0.993 59.8-108.8-140.7 133.4 -2.6 5.9 9.1 15 15 A E E +A 8 0A 110 -2,-0.4 -7,-0.3 -7,-0.3 18,-0.0 -0.319 33.4 173.8 -59.2 136.8 0.1 3.7 10.6 16 16 A L - 0 0 17 -9,-2.4 2,-0.6 3,-0.0 -1,-0.2 0.660 20.5-156.1-115.5 -28.9 -0.2 0.1 9.5 17 17 A G S S- 0 0 25 -10,-1.1 -9,-0.1 1,-0.2 -2,-0.1 0.030 80.6 -14.0 76.6 -31.9 3.0 -1.3 11.1 18 18 A N + 0 0 132 -2,-0.6 2,-0.6 -11,-0.1 -1,-0.2 0.279 68.8 178.6 170.0 39.2 3.1 -4.2 8.6 19 19 A E - 0 0 80 1,-0.1 2,-1.2 2,-0.1 14,-0.3 -0.392 35.8-129.5 -59.3 106.5 -0.1 -4.7 6.6 20 20 A R + 0 0 178 -2,-0.6 2,-0.3 12,-0.1 -1,-0.1 -0.394 59.3 133.1 -62.3 96.1 1.0 -7.7 4.4 21 21 A F - 0 0 23 -2,-1.2 2,-1.4 3,-0.1 3,-0.2 -0.765 46.8-151.4-149.9 99.8 -0.1 -6.3 1.0 22 22 A R + 0 0 223 -2,-0.3 3,-0.1 36,-0.2 10,-0.1 -0.538 46.5 134.6 -73.3 95.5 2.3 -6.4 -2.0 23 23 A A S S- 0 0 1 -2,-1.4 27,-0.5 1,-0.4 2,-0.3 0.450 71.4 -21.3-120.8 -5.2 1.1 -3.3 -4.0 24 24 A C - 0 0 20 -3,-0.2 -1,-0.4 7,-0.2 -3,-0.1 -0.940 46.0-128.9 172.8 166.7 4.4 -1.7 -4.9 25 25 A G + 0 0 48 -2,-0.3 6,-0.1 -3,-0.1 5,-0.0 -0.350 50.4 144.4-131.7 54.3 8.1 -1.5 -4.0 26 26 A C - 0 0 14 2,-0.1 -2,-0.1 1,-0.1 24,-0.0 0.113 55.4-117.6 -76.2-161.7 8.8 2.2 -3.7 27 27 A T S S+ 0 0 152 4,-0.0 2,-0.1 0, 0.0 -1,-0.1 0.134 87.3 41.5-127.8 19.6 11.2 3.8 -1.2 28 28 A G S > S- 0 0 43 0, 0.0 3,-1.3 0, 0.0 4,-0.4 -0.431 117.6 -37.8-138.3-145.9 8.8 6.0 0.8 29 29 A E G > S+ 0 0 121 1,-0.3 3,-2.4 2,-0.2 -19,-0.4 0.890 124.0 69.7 -55.1 -40.3 5.3 5.8 2.3 30 30 A L G 3 S+ 0 0 10 1,-0.3 -1,-0.3 -21,-0.1 -7,-0.2 0.866 83.1 72.4 -49.5 -35.4 4.0 3.8 -0.7 31 31 A E G < S+ 0 0 89 -3,-1.3 2,-0.5 1,-0.2 -1,-0.3 0.870 105.4 40.0 -50.7 -33.6 6.1 0.9 0.5 32 32 A N S < S+ 0 0 54 -3,-2.4 -22,-0.7 -4,-0.4 2,-0.3 -0.950 75.4 146.3-121.3 120.9 3.6 0.5 3.3 33 33 A V - 0 0 4 -2,-0.5 2,-0.2 -14,-0.3 -24,-0.1 -0.989 50.3-105.5-151.6 142.0 -0.2 0.9 2.6 34 34 A H > - 0 0 17 -2,-0.3 4,-2.0 -20,-0.2 5,-0.4 -0.456 21.7-145.1 -65.9 130.4 -3.4 -0.6 3.9 35 35 A R H > S+ 0 0 71 -2,-0.2 4,-0.9 1,-0.2 5,-0.5 0.752 95.2 67.4 -68.4 -18.4 -4.8 -3.0 1.3 36 36 A S H > S+ 0 0 93 3,-0.2 4,-1.1 1,-0.2 -1,-0.2 0.988 113.1 23.0 -66.3 -59.8 -8.3 -1.9 2.5 37 37 A C H > S+ 0 0 31 3,-0.2 4,-2.0 2,-0.2 -2,-0.2 0.807 127.2 50.6 -80.8 -26.5 -8.1 1.8 1.3 38 38 A L H X S+ 0 0 0 -4,-2.0 4,-2.8 2,-0.2 5,-0.5 0.989 110.8 44.7 -74.0 -60.1 -5.5 1.2 -1.4 39 39 A S H X S+ 0 0 20 -4,-0.9 4,-1.1 -5,-0.4 -3,-0.2 0.908 123.2 39.6 -49.7 -42.1 -7.1 -1.8 -3.2 40 40 A T H X S+ 0 0 67 -4,-1.1 4,-2.4 -5,-0.5 -1,-0.2 0.888 113.2 55.8 -76.9 -37.0 -10.4 0.1 -3.0 41 41 A W H X S+ 0 0 62 -4,-2.0 4,-4.1 2,-0.2 5,-0.5 0.987 107.9 46.1 -59.5 -57.8 -8.8 3.5 -3.8 42 42 A L H X>S+ 0 0 12 -4,-2.8 5,-2.7 1,-0.3 4,-1.2 0.889 111.3 55.7 -53.8 -34.3 -7.2 2.4 -7.0 43 43 A T H <5S+ 0 0 92 -4,-1.1 -1,-0.3 -5,-0.5 -2,-0.2 0.928 114.8 37.5 -65.1 -40.7 -10.6 0.8 -7.9 44 44 A I H <5S+ 0 0 126 -4,-2.4 -2,-0.2 -3,-0.4 -1,-0.2 0.916 123.1 41.9 -76.8 -41.9 -12.3 4.1 -7.4 45 45 A S H <5S- 0 0 56 -4,-4.1 -2,-0.2 -5,-0.2 -1,-0.2 0.594 115.4-119.9 -79.8 -7.6 -9.4 6.1 -9.0 46 46 A R T <5 + 0 0 218 -4,-1.2 2,-0.3 -5,-0.5 -3,-0.2 0.996 60.6 144.1 68.9 64.2 -9.2 3.4 -11.6 47 47 A N < + 0 0 39 -5,-2.7 -1,-0.2 -8,-0.1 3,-0.1 -0.975 32.1 178.7-134.6 148.8 -5.6 2.3 -11.1 48 48 A T S S+ 0 0 111 -2,-0.3 9,-2.9 1,-0.3 10,-0.5 0.616 72.2 23.9-120.8 -24.8 -3.9 -1.2 -11.3 49 49 A A B S-B 56 0B 25 7,-0.3 -1,-0.3 8,-0.1 7,-0.3 -0.985 92.8 -83.9-142.5 153.9 -0.3 -0.5 -10.5 50 50 A C > - 0 0 4 5,-4.0 4,-1.4 -27,-0.5 5,-0.5 -0.315 31.1-151.2 -56.2 127.8 1.7 2.2 -8.6 51 51 A Q T 4 S+ 0 0 155 1,-0.2 -1,-0.2 3,-0.2 5,-0.0 0.383 89.3 64.9 -84.0 8.0 2.3 5.1 -11.0 52 52 A I T 4 S+ 0 0 113 3,-0.1 -1,-0.2 -22,-0.0 -2,-0.1 0.848 125.2 2.9 -96.5 -42.5 5.6 6.0 -9.2 53 53 A C T 4 S- 0 0 62 2,-0.1 -2,-0.2 -3,-0.1 -29,-0.0 0.569 100.3-110.0-118.2 -17.3 7.7 2.9 -9.9 54 54 A G < + 0 0 57 -4,-1.4 2,-0.4 1,-0.3 -3,-0.2 0.826 65.1 146.1 91.4 35.2 5.3 0.9 -12.2 55 55 A V - 0 0 53 -5,-0.5 -5,-4.0 -32,-0.1 -1,-0.3 -0.865 48.3-120.0-107.5 138.2 4.4 -2.0 -9.8 56 56 A V B -B 49 0B 70 -2,-0.4 -7,-0.3 -7,-0.3 -8,-0.0 -0.400 13.1-133.3 -72.5 150.8 1.0 -3.6 -9.8 57 57 A Y - 0 0 5 -9,-2.9 -33,-0.2 -2,-0.1 -8,-0.1 0.876 25.8-164.1 -72.8 -35.5 -1.1 -3.5 -6.6 58 58 A N - 0 0 107 -10,-0.5 2,-0.3 -35,-0.1 -36,-0.2 0.971 14.7-174.9 49.5 72.6 -2.0 -7.2 -6.7 59 59 A T 0 0 47 1,-0.1 -1,-0.1 -20,-0.1 -38,-0.1 -0.747 360.0 360.0-100.1 147.9 -4.8 -7.1 -4.2 60 60 A R 0 0 266 -2,-0.3 -1,-0.1 0, 0.0 -2,-0.0 0.621 360.0 360.0 -63.7 360.0 -6.7 -10.2 -3.0