==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=9-AUG-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE/DNA 22-SEP-12 3VYB . COMPND 2 MOLECULE: METHYL-CPG-BINDING DOMAIN PROTEIN 4; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR J.OTANI,K.ARITA,T.KATO,M.KINOSHITA,M.ARIYOSHI,M.SHIRAKAWA . 63 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6428.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 28 44.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 15.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 72 A P 0 0 182 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-155.5 11.4 8.6 12.5 2 73 A V - 0 0 61 4,-0.1 3,-0.2 6,-0.0 4,-0.1 -0.921 360.0-106.5-104.7 123.5 8.4 9.1 10.2 3 74 A P > - 0 0 83 0, 0.0 3,-2.3 0, 0.0 -1,-0.0 -0.139 53.6 -79.6 -50.1 142.2 6.0 11.9 11.2 4 75 A C T 3 S+ 0 0 132 1,-0.3 3,-0.1 3,-0.0 0, 0.0 -0.139 114.8 9.9 -53.8 125.7 2.7 10.6 12.5 5 76 A G T 3 S+ 0 0 55 1,-0.4 -1,-0.3 -3,-0.2 2,-0.2 0.338 104.2 111.9 90.1 -7.4 0.3 9.5 9.8 6 77 A W < - 0 0 55 -3,-2.3 2,-0.4 -4,-0.1 -1,-0.4 -0.569 55.3-144.9 -94.5 161.0 2.9 9.8 7.0 7 78 A E E -A 27 0A 106 20,-2.3 20,-2.7 -2,-0.2 2,-0.5 -0.987 3.0-154.2-130.9 139.7 4.3 7.0 5.1 8 79 A R E -A 26 0A 135 -2,-0.4 2,-0.4 18,-0.2 18,-0.2 -0.947 9.6-165.6-113.7 129.1 7.8 6.4 3.7 9 80 A V E -A 25 0A 25 16,-2.8 16,-1.9 -2,-0.5 2,-0.4 -0.959 0.9-165.5-116.8 131.0 8.4 4.2 0.6 10 81 A V E +A 24 0A 77 -2,-0.4 2,-0.3 14,-0.2 14,-0.2 -0.942 10.5 175.6-115.5 135.2 11.9 3.0 -0.4 11 82 A K E -A 23 0A 130 12,-2.6 12,-2.6 -2,-0.4 2,-0.4 -0.965 18.9-145.4-135.7 153.6 12.7 1.4 -3.8 12 83 A Q E -A 22 0A 97 -2,-0.3 10,-0.2 10,-0.2 2,-0.1 -0.979 21.6-124.6-121.2 128.5 15.8 0.2 -5.6 13 84 A R - 0 0 111 8,-3.1 7,-3.0 -2,-0.4 3,-0.1 -0.391 23.3-174.6 -66.1 143.8 16.4 0.4 -9.3 14 85 A L + 0 0 148 5,-0.3 2,-0.3 1,-0.1 -1,-0.1 0.563 56.9 34.4-121.0 -15.3 17.1 -2.9 -11.0 15 86 A S S S+ 0 0 99 3,-0.0 3,-0.3 0, 0.0 -1,-0.1 -0.933 86.8 31.2-141.6 165.1 18.0 -2.2 -14.6 16 87 A G S > S- 0 0 63 -2,-0.3 3,-1.7 1,-0.2 -3,-0.0 -0.177 104.7 -44.9 81.5-177.0 19.7 0.4 -16.9 17 88 A K T 3 S+ 0 0 214 1,-0.3 -1,-0.2 3,-0.0 0, 0.0 0.765 137.6 51.2 -59.0 -27.5 22.6 2.7 -16.1 18 89 A T T > S+ 0 0 50 -3,-0.3 3,-2.2 2,-0.1 -1,-0.3 0.364 75.4 140.7 -98.7 5.8 21.1 3.6 -12.7 19 90 A A T < + 0 0 49 -3,-1.7 -5,-0.3 1,-0.3 3,-0.1 -0.109 66.4 32.3 -41.8 141.5 20.5 0.1 -11.4 20 91 A G T 3 S+ 0 0 40 -7,-3.0 -1,-0.3 1,-0.4 -6,-0.1 0.141 91.3 120.4 91.8 -21.0 21.3 -0.2 -7.7 21 92 A K < - 0 0 136 -3,-2.2 -8,-3.1 -9,-0.1 -1,-0.4 -0.370 58.1-126.7 -73.4 158.2 20.3 3.4 -7.0 22 93 A F E -A 12 0A 133 -10,-0.2 2,-0.4 -3,-0.1 -10,-0.2 -0.828 14.4-160.3-112.3 144.8 17.5 4.1 -4.5 23 94 A D E -A 11 0A 69 -12,-2.6 -12,-2.6 -2,-0.3 2,-0.4 -0.982 10.2-172.1-122.6 135.8 14.3 6.2 -4.8 24 95 A V E +A 10 0A 57 -2,-0.4 2,-0.3 11,-0.3 -14,-0.2 -0.975 8.4 167.6-127.5 139.0 12.4 7.4 -1.7 25 96 A Y E -A 9 0A 53 -16,-1.9 -16,-2.8 -2,-0.4 2,-0.3 -0.979 20.8-136.0-147.2 160.4 9.1 9.1 -1.6 26 97 A F E -AB 8 34A 55 8,-2.3 8,-2.6 -2,-0.3 2,-0.5 -0.879 2.5-151.4-119.1 148.6 6.5 10.1 1.1 27 98 A I E -AB 7 33A 39 -20,-2.7 -20,-2.3 -2,-0.3 6,-0.2 -0.983 18.4-140.8-118.5 125.1 2.8 9.9 1.4 28 99 A S > - 0 0 4 4,-2.6 3,-2.1 -2,-0.5 -22,-0.1 -0.251 34.3 -97.5 -73.0 167.1 0.9 12.4 3.5 29 100 A P T 3 S+ 0 0 68 0, 0.0 -1,-0.1 0, 0.0 -23,-0.1 0.828 127.8 50.7 -55.7 -31.0 -2.0 11.4 5.7 30 101 A Q T 3 S- 0 0 149 2,-0.1 -24,-0.1 1,-0.0 -25,-0.0 0.380 124.9-102.4 -89.9 1.7 -4.4 12.6 2.9 31 102 A G < + 0 0 49 -3,-2.1 2,-0.3 1,-0.3 -25,-0.0 0.541 67.8 150.7 92.8 7.4 -2.5 10.6 0.3 32 103 A L - 0 0 84 1,-0.0 -4,-2.6 -5,-0.0 2,-0.4 -0.581 37.5-139.2 -71.2 134.5 -0.5 13.3 -1.4 33 104 A K E -B 27 0A 119 -2,-0.3 2,-0.5 -6,-0.2 -6,-0.2 -0.817 16.0-168.6-104.2 129.4 2.8 11.9 -2.8 34 105 A F E +B 26 0A 19 -8,-2.6 -8,-2.3 -2,-0.4 3,-0.0 -0.968 12.2 177.5-120.6 124.4 6.2 13.7 -2.6 35 106 A R + 0 0 203 -2,-0.5 2,-0.3 -10,-0.2 -11,-0.3 0.474 68.1 41.2-100.7 -4.8 9.2 12.5 -4.6 36 107 A S S > S- 0 0 57 1,-0.1 4,-1.6 -10,-0.1 5,-0.1 -0.983 71.2-127.9-144.8 152.8 11.6 15.2 -3.6 37 108 A K H > S+ 0 0 188 -2,-0.3 4,-2.2 1,-0.2 5,-0.2 0.775 110.7 57.5 -67.7 -27.2 12.7 17.2 -0.5 38 109 A R H > S+ 0 0 220 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.917 107.4 43.2 -71.6 -45.2 12.2 20.4 -2.5 39 110 A S H > S+ 0 0 47 2,-0.2 4,-1.7 1,-0.2 -2,-0.2 0.842 116.7 49.1 -71.9 -30.4 8.5 19.8 -3.4 40 111 A L H X S+ 0 0 28 -4,-1.6 4,-2.8 2,-0.2 -2,-0.2 0.909 109.1 51.1 -72.7 -43.1 7.8 18.6 0.2 41 112 A A H X S+ 0 0 50 -4,-2.2 4,-1.3 1,-0.2 -2,-0.2 0.904 110.3 51.0 -58.8 -42.0 9.5 21.6 1.8 42 113 A N H X S+ 0 0 114 -4,-1.9 4,-0.5 1,-0.2 3,-0.3 0.912 111.6 46.7 -62.7 -43.2 7.4 23.8 -0.5 43 114 A Y H >X S+ 0 0 42 -4,-1.7 4,-1.8 1,-0.2 3,-0.8 0.898 108.4 56.4 -64.1 -40.6 4.2 22.1 0.6 44 115 A L H 3X S+ 0 0 74 -4,-2.8 4,-1.7 1,-0.2 -1,-0.2 0.765 88.3 78.5 -64.5 -26.6 5.3 22.2 4.3 45 116 A L H 3< S+ 0 0 132 -4,-1.3 -1,-0.2 -3,-0.3 -2,-0.2 0.900 118.8 7.2 -48.1 -48.4 5.6 26.0 4.1 46 117 A K H << S+ 0 0 174 -3,-0.8 -1,-0.2 -4,-0.5 -2,-0.2 0.546 136.9 45.8-112.6 -13.5 1.8 26.5 4.4 47 118 A N H < S+ 0 0 84 -4,-1.8 -3,-0.2 -5,-0.2 -2,-0.2 0.345 81.7 89.3-117.9 4.3 0.6 23.0 5.0 48 119 A G < + 0 0 46 -4,-1.7 2,-0.2 -5,-0.2 -1,-0.1 0.690 66.9 98.1 -79.1 -19.2 2.8 21.6 7.8 49 120 A E - 0 0 139 -5,-0.2 2,-0.4 -3,-0.1 -3,-0.0 -0.445 52.2-171.9 -69.4 140.1 0.7 22.9 10.6 50 121 A T - 0 0 125 -2,-0.2 2,-0.3 2,-0.0 -2,-0.0 -0.999 4.4-163.0-134.1 137.4 -1.8 20.6 12.3 51 122 A F - 0 0 151 -2,-0.4 2,-0.4 2,-0.0 -2,-0.0 -0.803 5.1-152.2-121.2 160.9 -4.5 21.6 14.8 52 123 A L - 0 0 126 -2,-0.3 3,-0.0 5,-0.0 -2,-0.0 -0.990 7.0-170.9-134.9 140.8 -6.6 19.9 17.4 53 124 A K > - 0 0 125 -2,-0.4 3,-2.0 1,-0.1 4,-0.2 -0.899 38.1-112.1-124.4 156.8 -10.1 20.8 18.9 54 125 A P G > S+ 0 0 115 0, 0.0 3,-2.4 0, 0.0 -1,-0.1 0.861 115.8 65.1 -52.7 -37.4 -12.0 19.2 21.8 55 126 A E G 3 S+ 0 0 157 1,-0.3 -3,-0.0 3,-0.1 0, 0.0 0.662 89.3 67.8 -63.2 -16.3 -14.5 17.9 19.3 56 127 A D G < S+ 0 0 89 -3,-2.0 2,-0.5 1,-0.1 -1,-0.3 0.543 94.0 69.8 -78.7 -7.4 -11.7 15.7 17.9 57 128 A F S < S- 0 0 118 -3,-2.4 2,-0.8 -4,-0.2 -1,-0.1 -0.954 71.5-150.7-118.3 127.8 -11.7 13.7 21.1 58 129 A N + 0 0 126 -2,-0.5 -3,-0.1 1,-0.1 -2,-0.0 -0.827 19.4 171.1-102.6 106.7 -14.5 11.4 22.2 59 130 A F + 0 0 196 -2,-0.8 2,-0.3 2,-0.0 -1,-0.1 0.236 53.1 90.7 -93.5 12.2 -15.0 11.1 26.0 60 131 A T - 0 0 99 0, 0.0 2,-0.5 0, 0.0 -2,-0.0 -0.836 61.8-144.8-116.6 150.5 -18.3 9.2 25.8 61 132 A V - 0 0 138 -2,-0.3 -2,-0.0 2,-0.1 0, 0.0 -0.939 26.4-126.7-105.8 127.5 -19.3 5.5 25.7 62 133 A L 0 0 139 -2,-0.5 -1,-0.0 0, 0.0 0, 0.0 -0.207 360.0 360.0 -62.9 164.0 -22.3 4.6 23.6 63 134 A P 0 0 180 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 0.731 360.0 360.0 -21.2 360.0 -25.1 2.6 25.2