==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-NOV-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 28-SEP-12 3VYM . COMPND 2 MOLECULE: CYTOCHROME C-552; . SOURCE 2 ORGANISM_SCIENTIFIC: HYDROGENOBACTER THERMOPHILUS; . AUTHOR Y.HAYASHI,S.NAGAO,H.OSUKA,H.KOMORI,Y.HIGUCHI,S.HIROTA . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6759.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 58.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 37.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A N > 0 0 145 0, 0.0 4,-2.3 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 162.6 54.6 -19.5 10.9 2 2 A E H > + 0 0 109 1,-0.2 4,-2.5 2,-0.2 5,-0.1 0.889 360.0 41.9 -67.8 -44.8 53.6 -16.4 9.0 3 3 A Q H > S+ 0 0 126 2,-0.2 4,-2.8 1,-0.2 -1,-0.2 0.842 112.4 57.3 -76.9 -22.6 56.8 -15.2 7.4 4 4 A L H > S+ 0 0 82 2,-0.2 4,-2.4 1,-0.2 -2,-0.2 0.952 108.5 47.0 -59.7 -46.2 57.7 -18.8 6.7 5 5 A A H <>S+ 0 0 28 -4,-2.3 5,-1.9 1,-0.2 6,-0.6 0.896 113.7 48.1 -62.5 -42.7 54.4 -19.0 4.7 6 6 A K H ><5S+ 0 0 112 -4,-2.5 3,-1.4 1,-0.2 -1,-0.2 0.935 111.7 49.7 -59.2 -48.2 55.2 -15.7 3.0 7 7 A Q H 3<5S+ 0 0 144 -4,-2.8 -2,-0.2 1,-0.3 -1,-0.2 0.841 108.0 52.4 -65.0 -32.9 58.8 -16.8 2.1 8 8 A K T 3<5S- 0 0 160 -4,-2.4 -1,-0.3 -5,-0.2 -2,-0.2 0.420 116.8-110.9 -88.5 6.4 57.6 -20.1 0.6 9 9 A G T X 5S+ 0 0 45 -3,-1.4 3,-1.8 -4,-0.2 4,-0.3 0.493 76.8 131.6 90.0 1.8 55.1 -18.4 -1.7 10 10 A C G >>< + 0 0 52 -5,-1.9 3,-1.7 1,-0.3 4,-0.8 0.809 62.6 64.3 -61.7 -31.7 52.0 -19.6 0.0 11 11 A M G 34 S+ 0 0 53 -6,-0.6 -1,-0.3 1,-0.3 -5,-0.1 0.541 83.2 76.5 -79.3 -7.8 50.3 -16.2 0.2 12 12 A A G <4 S+ 0 0 94 -3,-1.8 -1,-0.3 1,-0.1 -2,-0.2 0.732 114.4 22.4 -60.2 -29.3 50.2 -16.0 -3.6 13 13 A C T <4 S+ 0 0 113 -3,-1.7 2,-0.4 -4,-0.3 -2,-0.2 0.415 124.1 51.2-115.5 -3.8 47.3 -18.5 -3.2 14 14 A H < - 0 0 128 -4,-0.8 2,-0.3 3,-0.0 -1,-0.1 -0.992 57.8-153.7-137.1 144.3 46.0 -18.0 0.4 15 15 A D - 0 0 144 -2,-0.4 3,-0.1 1,-0.1 -3,-0.0 -0.801 25.7-125.5-105.6 158.8 44.9 -15.1 2.5 16 16 A L S S+ 0 0 118 -2,-0.3 2,-0.3 1,-0.2 -1,-0.1 0.904 91.9 10.4 -59.6 -45.4 45.1 -15.2 6.4 17 17 A K S S- 0 0 144 -3,-0.0 2,-1.1 0, 0.0 -1,-0.2 -0.976 70.8-120.6-139.3 143.0 41.4 -14.2 6.8 18 18 A A - 0 0 88 -2,-0.3 0, 0.0 1,-0.2 0, 0.0 -0.806 28.6-160.4 -75.6 103.7 38.3 -13.9 4.6 19 19 A K + 0 0 184 -2,-1.1 2,-0.2 2,-0.0 -1,-0.2 0.960 68.9 56.7 -49.1 -49.7 37.7 -10.3 5.3 20 20 A K - 0 0 177 -3,-0.1 4,-0.1 2,-0.1 -2,-0.0 -0.550 67.6-146.6 -95.7 144.8 34.0 -10.6 4.2 21 21 A V S S+ 0 0 129 -2,-0.2 36,-0.1 2,-0.1 -1,-0.1 0.729 80.1 67.3 -75.1 -23.8 31.1 -12.9 5.4 22 22 A G S S- 0 0 43 1,-0.1 -2,-0.1 33,-0.0 3,-0.1 -0.623 94.4 -91.5 -97.9 155.5 29.3 -13.3 2.0 23 23 A P - 0 0 44 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.337 46.8-101.4 -59.2 147.1 30.6 -15.0 -1.2 24 24 A A >> - 0 0 58 1,-0.1 4,-1.7 -4,-0.1 3,-0.7 -0.399 33.0-120.3 -65.6 144.6 32.4 -12.9 -3.8 25 25 A Y H 3> S+ 0 0 123 1,-0.2 4,-3.1 2,-0.2 5,-0.2 0.867 112.0 60.8 -57.0 -31.1 30.0 -12.0 -6.6 26 26 A A H 3> S+ 0 0 46 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.904 105.8 48.0 -68.6 -28.9 32.2 -13.7 -9.2 27 27 A D H <> S+ 0 0 91 -3,-0.7 4,-2.5 2,-0.2 -1,-0.2 0.876 110.0 51.3 -77.9 -34.4 31.7 -17.0 -7.3 28 28 A V H X S+ 0 0 13 -4,-1.7 4,-1.9 2,-0.2 -2,-0.2 0.931 110.8 49.7 -60.3 -46.1 28.0 -16.4 -7.1 29 29 A A H X S+ 0 0 5 -4,-3.1 4,-2.3 2,-0.2 -2,-0.2 0.930 111.5 48.7 -60.0 -43.8 28.0 -15.8 -10.9 30 30 A K H < S+ 0 0 179 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.946 110.3 50.3 -63.2 -45.9 30.0 -19.0 -11.5 31 31 A K H < S+ 0 0 87 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.870 125.0 26.4 -62.1 -34.8 27.7 -21.0 -9.3 32 32 A Y H >< S+ 0 0 15 -4,-1.9 3,-1.6 -5,-0.1 -1,-0.2 0.514 86.4 113.0-108.5 -7.4 24.5 -19.8 -11.1 33 33 A A T 3< S+ 0 0 57 -4,-2.3 3,-0.1 1,-0.3 45,-0.0 -0.438 82.1 28.8 -70.5 145.5 25.5 -18.8 -14.6 34 34 A G T 3 S+ 0 0 88 1,-0.3 2,-0.4 -2,-0.1 -1,-0.3 0.542 94.6 118.7 82.1 5.2 23.9 -21.1 -17.2 35 35 A R X - 0 0 147 -3,-1.6 3,-1.1 1,-0.1 -1,-0.3 -0.903 63.0-134.1-110.3 139.4 20.9 -21.8 -14.9 36 36 A K T 3 S+ 0 0 204 -2,-0.4 3,-0.2 1,-0.3 -1,-0.1 0.735 93.7 30.8 -72.2 -31.8 17.4 -20.9 -16.1 37 37 A D T 3> S+ 0 0 99 1,-0.1 4,-2.5 2,-0.1 3,-0.4 0.175 78.8 119.7-112.2 24.5 15.7 -19.2 -13.1 38 38 A A H <> S+ 0 0 8 -3,-1.1 4,-2.7 1,-0.3 5,-0.2 0.710 70.0 56.7 -66.3 -26.4 18.7 -17.6 -11.5 39 39 A V H > S+ 0 0 39 -3,-0.2 4,-2.6 2,-0.2 5,-0.3 0.927 112.3 42.8 -72.4 -42.8 17.5 -14.0 -11.8 40 40 A D H > S+ 0 0 112 -3,-0.4 4,-1.8 2,-0.2 -2,-0.2 0.922 116.7 48.7 -64.3 -41.8 14.3 -14.8 -9.9 41 41 A Y H X S+ 0 0 82 -4,-2.5 4,-1.9 2,-0.2 -2,-0.2 0.949 116.4 41.3 -63.5 -51.7 16.2 -16.9 -7.4 42 42 A L H X S+ 0 0 16 -4,-2.7 4,-2.6 2,-0.2 5,-0.2 0.928 111.7 53.4 -64.3 -48.4 18.9 -14.2 -6.8 43 43 A A H X S+ 0 0 17 -4,-2.6 4,-2.4 -5,-0.2 5,-0.2 0.897 110.8 50.0 -48.9 -44.8 16.5 -11.2 -6.7 44 44 A G H X S+ 0 0 21 -4,-1.8 4,-2.7 -5,-0.3 5,-0.3 0.906 110.5 47.7 -66.3 -41.0 14.5 -13.1 -4.1 45 45 A K H X S+ 0 0 67 -4,-1.9 4,-2.1 2,-0.2 -2,-0.2 0.885 112.7 49.9 -64.9 -38.7 17.6 -13.9 -1.9 46 46 A I H < S+ 0 0 25 -4,-2.6 16,-0.7 2,-0.2 -2,-0.2 0.957 118.1 38.2 -66.9 -46.1 18.7 -10.3 -2.1 47 47 A K H < S+ 0 0 66 -4,-2.4 15,-1.4 -5,-0.2 -2,-0.2 0.943 130.7 26.2 -72.2 -48.0 15.4 -8.9 -1.2 48 48 A K H < S- 0 0 150 -4,-2.7 -3,-0.2 13,-0.2 -2,-0.2 0.547 101.4-130.5 -93.2 -17.2 14.3 -11.5 1.5 49 49 A G < - 0 0 11 -4,-2.1 2,-0.3 -5,-0.3 -1,-0.2 -0.155 25.0-163.6 90.4 179.5 17.7 -12.8 2.7 50 50 A G B -A 59 0A 26 9,-1.6 9,-3.4 -4,-0.1 2,-0.3 -0.946 7.0-155.4 176.1 172.8 18.8 -16.4 3.2 51 51 A S + 0 0 79 -2,-0.3 5,-0.2 7,-0.2 6,-0.1 -0.971 60.3 48.2-159.6 156.8 21.3 -18.7 4.8 52 52 A G S S+ 0 0 58 3,-1.8 4,-0.1 5,-0.4 5,-0.1 0.249 79.2 93.7 97.8 -11.2 23.0 -22.1 4.4 53 53 A V S S+ 0 0 63 1,-0.1 3,-0.1 2,-0.1 -1,-0.0 0.935 110.3 9.8 -77.1 -41.7 23.9 -22.0 0.7 54 54 A W S S- 0 0 119 1,-0.3 2,-0.3 3,-0.2 -1,-0.1 0.417 135.0 -44.8-110.3 -8.4 27.4 -20.8 1.4 55 55 A G - 0 0 41 1,-0.1 -3,-1.8 2,-0.1 -1,-0.3 -0.991 66.5 -71.2 163.3-169.5 27.6 -21.1 5.1 56 56 A S S S+ 0 0 108 -2,-0.3 -1,-0.1 -5,-0.2 -3,-0.0 0.801 93.8 93.4 -94.2 -33.1 25.7 -20.5 8.4 57 57 A V S S- 0 0 94 -36,-0.1 -5,-0.4 -3,-0.1 2,-0.2 -0.328 73.7-137.7 -64.7 131.9 25.9 -16.7 8.6 58 58 A P - 0 0 81 0, 0.0 -7,-0.2 0, 0.0 -1,-0.1 -0.594 4.8-126.8 -90.4 159.3 22.7 -15.4 7.1 59 59 A M B -A 50 0A 78 -9,-3.4 -9,-1.6 -2,-0.2 3,-0.1 -0.890 32.1-131.6 -93.4 127.9 22.1 -12.5 4.7 60 60 A P - 0 0 82 0, 0.0 -11,-0.3 0, 0.0 -12,-0.0 -0.386 35.2 -83.7 -70.9 158.8 19.5 -10.3 6.2 61 61 A P - 0 0 93 0, 0.0 2,-0.3 0, 0.0 -13,-0.2 -0.317 55.0-136.5 -53.1 146.5 16.6 -9.0 4.0 62 62 A Q - 0 0 86 -15,-1.4 2,-2.1 -16,-0.7 7,-0.1 -0.855 12.2-114.1-121.7 147.7 17.9 -6.0 2.2 63 63 A N + 0 0 161 -2,-0.3 2,-0.3 -15,-0.0 -16,-0.1 -0.496 68.8 125.3 -83.5 71.2 16.2 -2.8 1.6 64 64 A V - 0 0 25 -2,-2.1 2,-0.1 -17,-0.2 -2,-0.1 -0.929 58.9-117.1-126.8 155.4 15.8 -2.9 -2.2 65 65 A T > - 0 0 67 -2,-0.3 4,-2.5 1,-0.1 5,-0.2 -0.415 36.5-105.0 -80.1 168.9 12.8 -2.6 -4.4 66 66 A D H > S+ 0 0 120 1,-0.2 4,-1.8 2,-0.2 -1,-0.1 0.872 124.8 50.6 -58.0 -39.3 11.8 -5.6 -6.6 67 67 A A H > S+ 0 0 72 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.903 110.8 48.1 -60.9 -48.7 13.3 -3.7 -9.6 68 68 A E H > S+ 0 0 95 2,-0.2 4,-2.6 1,-0.2 -2,-0.2 0.881 110.7 50.0 -65.6 -39.6 16.6 -3.0 -7.7 69 69 A A H X S+ 0 0 2 -4,-2.5 4,-2.7 2,-0.2 -1,-0.2 0.915 111.8 49.8 -65.1 -40.2 16.9 -6.7 -6.6 70 70 A K H X S+ 0 0 111 -4,-1.8 4,-2.2 -5,-0.2 -2,-0.2 0.930 111.9 47.1 -65.7 -45.6 16.3 -7.8 -10.2 71 71 A Q H X S+ 0 0 108 -4,-2.4 4,-3.0 2,-0.2 -2,-0.2 0.895 112.0 49.9 -62.7 -43.2 18.9 -5.4 -11.6 72 72 A L H X S+ 0 0 63 -4,-2.6 4,-2.7 2,-0.2 -2,-0.2 0.929 110.9 49.9 -61.1 -45.4 21.5 -6.4 -8.9 73 73 A A H X S+ 0 0 0 -4,-2.7 4,-2.5 2,-0.2 -2,-0.2 0.889 113.0 47.3 -56.6 -44.3 20.9 -10.2 -9.7 74 74 A Q H X S+ 0 0 80 -4,-2.2 4,-1.1 2,-0.2 -2,-0.2 0.922 112.0 49.6 -66.3 -41.9 21.3 -9.4 -13.4 75 75 A W H >< S+ 0 0 119 -4,-3.0 3,-0.9 2,-0.2 4,-0.4 0.953 112.2 47.3 -58.3 -46.9 24.5 -7.4 -12.8 76 76 A I H >< S+ 0 0 9 -4,-2.7 3,-1.7 1,-0.3 -2,-0.2 0.925 108.9 54.7 -67.5 -41.3 25.9 -10.2 -10.6 77 77 A L H 3< S+ 0 0 38 -4,-2.5 -1,-0.3 1,-0.3 -2,-0.2 0.694 104.7 55.5 -64.4 -20.3 25.0 -12.8 -13.3 78 78 A S T << S+ 0 0 89 -4,-1.1 -1,-0.3 -3,-0.9 -2,-0.2 0.404 78.7 132.6 -84.1 -3.7 27.0 -10.7 -15.9 79 79 A I < 0 0 49 -3,-1.7 -3,-0.0 -4,-0.4 -4,-0.0 -0.349 360.0 360.0 -65.7 128.0 30.2 -10.7 -13.9 80 80 A K 0 0 255 -2,-0.1 -1,-0.1 -51,-0.0 -54,-0.1 -0.920 360.0 360.0-111.1 360.0 33.3 -11.7 -15.8