==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-FEB-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE/RNA 05-OCT-12 3VYX . COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.A.YUAN,Q.FU . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6179.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 64.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 16.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 11.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 29.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 169 A N >> 0 0 151 0, 0.0 3,-0.7 0, 0.0 4,-0.6 0.000 360.0 360.0 360.0 -57.5 24.6 -16.7 -10.2 2 170 A A G >4> + 0 0 25 1,-0.2 5,-2.7 2,-0.2 3,-0.8 0.801 360.0 70.1 -57.8 -30.7 21.3 -17.8 -8.5 3 171 A G G >45S+ 0 0 55 1,-0.2 3,-0.6 3,-0.2 -1,-0.2 0.792 94.2 52.0 -53.9 -35.3 23.6 -17.4 -5.4 4 172 A L G <45S+ 0 0 119 -3,-0.7 -1,-0.2 1,-0.2 -2,-0.2 0.761 111.0 49.9 -68.1 -26.4 23.5 -13.6 -5.9 5 173 A H G X<5S- 0 0 45 -3,-0.8 3,-1.1 -4,-0.6 -1,-0.2 -0.137 125.5 -86.7-117.8 36.4 19.7 -13.7 -6.0 6 174 A G T < 5S- 0 0 2 -3,-0.6 85,-3.7 1,-0.2 -3,-0.2 0.628 75.6 -72.8 75.2 18.6 18.7 -15.7 -3.0 7 175 A N T 3 > - 0 0 43 -2,-0.4 4,-1.3 -3,-0.1 3,-1.0 -0.804 53.2 -86.8-141.0 174.7 15.9 -20.2 -10.1 10 178 A L T 34 S+ 0 0 70 -2,-0.3 4,-0.5 1,-0.2 66,-0.1 0.806 122.7 54.1 -57.2 -31.4 13.6 -21.2 -12.9 11 179 A E T 34 S+ 0 0 184 1,-0.2 -1,-0.2 2,-0.1 4,-0.1 0.548 119.5 28.3 -85.8 -12.9 12.6 -24.4 -11.2 12 180 A N T <> S+ 0 0 19 -3,-1.0 4,-1.2 2,-0.1 -2,-0.2 0.405 98.6 84.0-125.9 -1.8 11.5 -22.8 -7.8 13 181 A A H X S+ 0 0 0 -4,-1.3 4,-2.5 2,-0.2 5,-0.2 0.916 85.5 52.0 -76.1 -46.3 10.3 -19.4 -8.8 14 182 A K H > S+ 0 0 72 -4,-0.5 4,-2.6 1,-0.2 5,-0.2 0.894 109.0 52.2 -57.0 -44.8 6.7 -20.0 -9.9 15 183 A A H > S+ 0 0 71 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.893 112.0 45.8 -56.0 -44.8 5.8 -21.9 -6.7 16 184 A R H X S+ 0 0 16 -4,-1.2 4,-1.8 1,-0.2 -1,-0.2 0.842 111.6 51.4 -74.9 -35.1 7.1 -19.0 -4.6 17 185 A L H X S+ 0 0 1 -4,-2.5 4,-2.5 2,-0.2 -2,-0.2 0.916 110.0 49.2 -60.9 -46.8 5.3 -16.4 -6.7 18 186 A N H X S+ 0 0 85 -4,-2.6 4,-2.4 1,-0.2 -2,-0.2 0.848 108.9 53.4 -65.9 -33.1 2.0 -18.3 -6.4 19 187 A Q H X S+ 0 0 84 -4,-1.7 4,-2.9 2,-0.2 -1,-0.2 0.891 108.6 49.5 -65.0 -43.4 2.5 -18.5 -2.6 20 188 A Y H X S+ 0 0 6 -4,-1.8 4,-2.3 2,-0.2 6,-0.3 0.935 110.9 50.6 -58.3 -49.3 3.0 -14.7 -2.5 21 189 A F H <>S+ 0 0 15 -4,-2.5 5,-1.5 2,-0.2 4,-0.4 0.904 113.0 46.2 -52.4 -46.8 -0.2 -14.3 -4.5 22 190 A Q H ><5S+ 0 0 161 -4,-2.4 3,-1.0 2,-0.2 -2,-0.2 0.943 113.2 47.0 -65.6 -48.8 -2.1 -16.6 -2.1 23 191 A K H 3<5S+ 0 0 122 -4,-2.9 -1,-0.2 1,-0.3 -2,-0.2 0.850 118.5 42.6 -62.2 -34.1 -0.8 -14.9 1.0 24 192 A E T 3<5S- 0 0 37 -4,-2.3 -1,-0.3 -5,-0.2 -2,-0.2 0.406 105.8-129.6 -91.3 -1.2 -1.6 -11.5 -0.4 25 193 A K T < 5 + 0 0 196 -3,-1.0 -3,-0.2 -4,-0.4 2,-0.2 0.710 67.6 126.6 55.0 22.2 -4.9 -12.7 -1.8 26 194 A I < - 0 0 66 -5,-1.5 2,-0.4 -6,-0.3 -1,-0.2 -0.570 50.5-147.1 -96.9 168.0 -4.0 -11.2 -5.2 27 195 A Q - 0 0 151 -2,-0.2 2,-0.3 -3,-0.1 -9,-0.0 -0.985 9.1-163.6-135.7 123.8 -3.9 -12.9 -8.6 28 196 A G - 0 0 17 -2,-0.4 2,-0.4 21,-0.1 21,-0.1 -0.791 8.6-150.4-101.3 151.6 -1.3 -12.0 -11.3 29 197 A E - 0 0 147 -2,-0.3 2,-0.4 19,-0.3 19,-0.3 -0.975 14.0-126.0-123.5 138.2 -1.8 -13.0 -14.9 30 198 A Y - 0 0 45 -2,-0.4 2,-0.5 17,-0.1 17,-0.2 -0.668 19.6-154.4 -78.3 133.9 0.8 -13.7 -17.5 31 199 A K E -A 46 0A 125 15,-2.7 15,-2.1 -2,-0.4 2,-0.3 -0.972 14.3-157.2-110.1 120.0 0.5 -11.6 -20.6 32 200 A Y E -A 45 0A 83 -2,-0.5 2,-0.4 13,-0.2 13,-0.2 -0.727 11.3-167.1-103.1 145.5 2.1 -13.3 -23.6 33 201 A T E -A 44 0A 61 11,-2.3 11,-2.9 -2,-0.3 2,-0.2 -0.997 24.5-123.8-129.2 130.6 3.3 -11.8 -26.9 34 202 A Q E -A 43 0A 133 -2,-0.4 2,-0.4 9,-0.2 9,-0.2 -0.543 26.3-166.8 -70.6 135.7 4.1 -13.9 -29.9 35 203 A V E +A 42 0A 54 7,-2.6 7,-2.1 -2,-0.2 5,-0.1 -0.971 50.4 8.7-123.8 146.2 7.6 -13.6 -31.3 36 204 A G S S- 0 0 38 -2,-0.4 5,-0.1 5,-0.2 6,-0.1 -0.054 100.2 -54.6 77.6 171.7 8.9 -14.9 -34.7 37 205 A P > - 0 0 60 0, 0.0 3,-2.2 0, 0.0 -2,-0.1 -0.325 61.7 -92.5 -80.9 178.4 6.6 -16.4 -37.4 38 206 A D G > S+ 0 0 135 1,-0.3 3,-0.6 2,-0.2 -3,-0.0 0.781 127.0 51.1 -62.5 -34.3 4.2 -19.2 -36.8 39 207 A H G 3 S+ 0 0 169 1,-0.2 -1,-0.3 0, 0.0 -3,-0.1 0.471 122.0 33.1 -81.2 -1.8 6.8 -21.9 -37.9 40 208 A N G < S+ 0 0 121 -3,-2.2 2,-0.3 -5,-0.1 -1,-0.2 -0.279 87.1 164.5-146.4 53.3 9.4 -20.3 -35.5 41 209 A R < + 0 0 62 -3,-0.6 2,-0.2 -5,-0.1 -5,-0.2 -0.540 7.2 160.1 -85.4 137.8 7.4 -19.1 -32.6 42 210 A S E -A 35 0A 19 -7,-2.1 -7,-2.6 -2,-0.3 2,-0.4 -0.741 28.0-118.3-140.0-174.9 8.7 -18.1 -29.2 43 211 A F E -AB 34 64A 37 21,-2.8 21,-2.5 -2,-0.2 2,-0.5 -0.963 11.4-150.0-140.5 143.9 7.2 -15.9 -26.5 44 212 A I E -AB 33 63A 35 -11,-2.9 -11,-2.3 -2,-0.4 2,-0.4 -0.960 22.4-168.1 -99.4 129.4 7.4 -12.8 -24.4 45 213 A A E +AB 32 62A 0 17,-2.8 17,-2.5 -2,-0.5 2,-0.3 -0.979 10.4 174.5-110.4 137.4 5.7 -13.2 -21.0 46 214 A E E +AB 31 61A 35 -15,-2.1 -15,-2.7 -2,-0.4 2,-0.3 -0.958 7.3 179.8-137.9 154.0 5.2 -10.1 -18.9 47 215 A M E - B 0 60A 6 13,-1.8 13,-1.6 -2,-0.3 2,-0.4 -0.963 12.1-159.1-154.1 139.2 3.4 -9.4 -15.6 48 216 A T E + B 0 59A 67 -2,-0.3 2,-0.4 -19,-0.3 -19,-0.3 -0.986 16.5 179.6-119.4 129.7 2.8 -6.4 -13.4 49 217 A I E - B 0 58A 6 9,-2.5 9,-3.2 -2,-0.4 2,-0.4 -0.991 25.8-131.4-133.1 138.7 2.0 -6.7 -9.7 50 218 A Y E - B 0 57A 141 -2,-0.4 2,-0.7 7,-0.3 7,-0.3 -0.754 21.2-147.9 -82.8 130.2 1.3 -4.2 -6.9 51 219 A I E >>> - B 0 56A 0 5,-2.3 4,-1.6 -2,-0.4 3,-1.6 -0.880 7.2-162.7-106.9 103.1 3.3 -4.9 -3.8 52 220 A K G >45S+ 0 0 146 -2,-0.7 3,-0.6 1,-0.3 -1,-0.2 0.882 89.7 58.7 -40.5 -53.7 1.5 -3.9 -0.6 53 221 A Q G 345S+ 0 0 98 1,-0.2 -1,-0.3 2,-0.1 -2,-0.0 0.748 118.1 30.0 -51.2 -30.5 4.8 -4.0 1.4 54 222 A L G <45S- 0 0 62 -3,-1.6 -1,-0.2 2,-0.2 -2,-0.2 0.510 98.2-128.7-111.8 -11.9 6.4 -1.4 -0.8 55 223 A G T <<5S+ 0 0 45 -4,-1.6 2,-0.3 -3,-0.6 -3,-0.2 0.738 78.2 90.9 64.0 23.8 3.3 0.7 -2.0 56 224 A R E S- 0 0 68 -23,-0.1 4,-2.1 -24,-0.1 -23,-0.2 -0.919 91.7-100.6-143.3 168.9 8.1 -21.7 -25.5 67 235 A K H > S+ 0 0 110 -2,-0.3 4,-2.6 1,-0.2 5,-0.2 0.856 118.4 54.4 -58.4 -41.2 5.2 -20.3 -23.3 68 236 A K H > S+ 0 0 129 1,-0.2 4,-2.8 2,-0.2 -1,-0.2 0.935 111.2 43.7 -60.5 -50.6 6.3 -22.4 -20.2 69 237 A L H > S+ 0 0 54 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.867 112.3 52.9 -61.5 -43.7 9.8 -21.1 -20.2 70 238 A A H X S+ 0 0 0 -4,-2.1 4,-2.1 2,-0.2 -25,-0.2 0.918 112.8 45.2 -60.3 -45.1 8.7 -17.5 -20.9 71 239 A A H X S+ 0 0 0 -4,-2.6 4,-2.3 2,-0.2 5,-0.2 0.925 111.8 51.3 -66.3 -43.8 6.4 -17.7 -17.9 72 240 A Q H X S+ 0 0 28 -4,-2.8 4,-2.4 1,-0.2 -2,-0.2 0.916 112.1 47.1 -58.0 -43.4 9.0 -19.3 -15.6 73 241 A S H X S+ 0 0 23 -4,-2.5 4,-2.3 2,-0.2 -1,-0.2 0.870 109.9 53.0 -65.1 -41.7 11.5 -16.6 -16.5 74 242 A C H X S+ 0 0 0 -4,-2.1 4,-2.2 2,-0.2 -2,-0.2 0.940 112.1 44.5 -55.4 -51.5 8.9 -13.9 -15.9 75 243 A A H X S+ 0 0 0 -4,-2.3 4,-3.2 1,-0.2 5,-0.2 0.882 110.6 56.8 -61.5 -39.7 8.2 -15.3 -12.4 76 244 A L H X S+ 0 0 19 -4,-2.4 4,-2.8 -5,-0.2 -1,-0.2 0.926 108.2 45.4 -58.0 -45.2 11.9 -15.7 -11.8 77 245 A S H X S+ 0 0 27 -4,-2.3 4,-2.3 2,-0.2 -2,-0.2 0.931 115.1 48.3 -65.3 -43.9 12.5 -12.0 -12.4 78 246 A L H X S+ 0 0 0 -4,-2.2 4,-2.3 2,-0.2 -2,-0.2 0.919 113.8 45.8 -59.8 -47.9 9.5 -11.0 -10.2 79 247 A V H X S+ 0 0 0 -4,-3.2 4,-2.0 2,-0.2 -2,-0.2 0.891 112.1 50.4 -66.6 -40.7 10.6 -13.3 -7.4 80 248 A R H X S+ 0 0 51 -4,-2.8 4,-2.2 -5,-0.2 -1,-0.2 0.851 109.8 51.9 -64.6 -38.0 14.3 -12.1 -7.6 81 249 A Q H X S+ 0 0 61 -4,-2.3 4,-1.6 -5,-0.2 -2,-0.2 0.955 109.3 49.5 -59.3 -49.9 13.1 -8.5 -7.5 82 250 A L H <>S+ 0 0 1 -4,-2.3 5,-2.5 1,-0.2 6,-1.3 0.843 110.0 53.0 -58.3 -37.6 11.0 -9.3 -4.4 83 251 A Y H ><5S+ 0 0 71 -4,-2.0 3,-1.6 4,-0.2 -1,-0.2 0.958 110.1 45.0 -59.8 -52.1 14.1 -10.9 -2.8 84 252 A H H 3<5S+ 0 0 111 -4,-2.2 -2,-0.2 1,-0.3 -1,-0.2 0.701 111.3 54.0 -70.9 -20.5 16.3 -7.9 -3.3 85 253 A L T 3<5S- 0 0 64 -4,-1.6 -1,-0.3 -5,-0.1 -2,-0.2 0.392 116.1-116.1 -92.9 0.8 13.6 -5.6 -2.0 86 254 A G T < 5S+ 0 0 65 -3,-1.6 -3,-0.2 2,-0.2 -2,-0.1 0.637 85.9 115.0 78.2 15.5 13.4 -7.6 1.1 87 255 A V S