==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 22-JUL-04 1W41 . COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L30E; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS CELER; . AUTHOR C.F.LEE,K.M.LEE,S.H.CHAN,M.D.ALLEN,M.BYCROFT,K.B.WONG . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5537.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 69.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 5.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 11.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 34.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 0 A M 0 0 209 0, 0.0 2,-0.7 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 141.5 -6.1 -7.6 18.2 2 1 A V - 0 0 30 91,-0.1 2,-0.7 94,-0.1 92,-0.0 -0.655 360.0-148.3 -71.9 114.3 -3.3 -6.9 15.7 3 2 A D > - 0 0 87 -2,-0.7 4,-2.9 1,-0.2 5,-0.3 -0.771 3.1-155.6 -91.9 105.3 -1.9 -3.4 16.9 4 3 A F H > S+ 0 0 21 -2,-0.7 4,-2.7 1,-0.2 5,-0.3 0.892 88.2 48.7 -52.0 -54.4 -0.7 -1.6 13.8 5 4 A A H > S+ 0 0 40 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.915 116.6 42.4 -56.0 -47.5 1.9 0.7 15.4 6 5 A F H > S+ 0 0 110 2,-0.2 4,-2.4 1,-0.2 -2,-0.2 0.943 117.3 45.1 -66.2 -46.3 3.5 -2.2 17.4 7 6 A E H X S+ 0 0 11 -4,-2.9 4,-2.5 2,-0.2 87,-0.3 0.854 110.7 53.9 -72.4 -30.5 3.5 -4.7 14.6 8 7 A L H X S+ 0 0 2 -4,-2.7 4,-2.5 -5,-0.3 -1,-0.2 0.936 111.3 45.2 -67.1 -44.7 4.8 -2.3 12.0 9 8 A R H X S+ 0 0 152 -4,-1.7 4,-2.1 -5,-0.3 -2,-0.2 0.929 112.0 53.2 -63.2 -40.7 7.7 -1.3 14.2 10 9 A K H X S+ 0 0 71 -4,-2.4 4,-2.0 1,-0.2 81,-0.4 0.887 109.3 48.1 -64.6 -38.2 8.3 -5.0 14.9 11 10 A A H X S+ 0 0 0 -4,-2.5 4,-2.2 2,-0.2 -1,-0.2 0.909 110.8 52.1 -64.3 -41.8 8.4 -5.8 11.2 12 11 A Q H < S+ 0 0 52 -4,-2.5 5,-0.3 1,-0.2 -2,-0.2 0.869 118.0 37.0 -58.6 -38.6 10.8 -2.9 10.7 13 12 A D H < S+ 0 0 117 -4,-2.1 -2,-0.2 -5,-0.1 -1,-0.2 0.688 130.3 26.7 -92.3 -23.6 13.2 -4.2 13.4 14 13 A T H < S+ 0 0 70 -4,-2.0 -3,-0.2 -5,-0.2 -2,-0.2 0.517 127.7 24.5-118.8 -12.1 12.9 -8.0 12.9 15 14 A G S < S- 0 0 23 -4,-2.2 2,-0.3 -5,-0.3 -3,-0.1 -0.014 92.4 -82.2-119.6-133.9 12.0 -8.3 9.1 16 15 A K E +A 88 0A 111 72,-2.7 71,-2.3 -2,-0.1 72,-2.1 -0.943 39.2 171.6-148.8 124.5 12.6 -6.0 6.2 17 16 A I E -A 86 0A 24 -2,-0.3 2,-0.4 -5,-0.3 69,-0.2 -0.933 19.3-147.7-124.9 155.4 10.6 -3.0 5.0 18 17 A V E -A 85 0A 5 67,-2.5 67,-2.8 -2,-0.3 2,-0.3 -0.989 19.4-143.9-121.2 139.6 11.2 -0.4 2.3 19 18 A M E +A 84 0A 31 -2,-0.4 4,-0.4 65,-0.2 65,-0.2 -0.755 48.5 38.1-108.6 147.3 10.0 3.2 2.8 20 19 A G S > S- 0 0 24 63,-2.9 4,-2.2 -2,-0.3 5,-0.2 0.025 81.1 -87.3 100.2 154.7 8.6 5.8 0.3 21 20 A A H > S+ 0 0 20 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.874 119.6 57.1 -61.0 -40.6 6.3 5.9 -2.7 22 21 A R H > S+ 0 0 178 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.956 114.3 34.4 -60.5 -55.3 9.1 5.2 -5.1 23 22 A K H > S+ 0 0 67 -4,-0.4 4,-2.9 2,-0.2 5,-0.2 0.881 115.1 58.6 -70.3 -36.2 10.4 1.9 -3.7 24 23 A S H X S+ 0 0 0 -4,-2.2 4,-2.1 1,-0.2 -2,-0.2 0.929 109.4 44.1 -60.5 -42.6 6.8 0.9 -2.7 25 24 A I H X S+ 0 0 27 -4,-2.6 4,-2.9 2,-0.2 -1,-0.2 0.908 113.1 51.6 -67.8 -42.3 5.7 1.1 -6.3 26 25 A Q H X S+ 0 0 93 -4,-1.9 4,-2.4 -5,-0.2 -2,-0.2 0.916 111.7 46.0 -55.7 -48.9 8.8 -0.7 -7.5 27 26 A Y H X>S+ 0 0 50 -4,-2.9 5,-2.6 2,-0.2 4,-0.7 0.852 112.4 50.6 -68.5 -35.9 8.3 -3.5 -5.1 28 27 A A H ><5S+ 0 0 0 -4,-2.1 3,-0.9 -5,-0.2 -2,-0.2 0.953 111.7 49.8 -62.3 -48.1 4.6 -3.8 -6.0 29 28 A K H 3<5S+ 0 0 128 -4,-2.9 -2,-0.2 1,-0.2 -1,-0.2 0.900 113.7 43.5 -52.9 -48.9 5.5 -3.9 -9.6 30 29 A M H 3<5S- 0 0 111 -4,-2.4 -1,-0.2 -5,-0.1 -2,-0.2 0.525 109.7-119.5 -81.0 -6.0 8.1 -6.6 -9.2 31 30 A G T <<5S+ 0 0 43 -3,-0.9 -3,-0.2 -4,-0.7 -2,-0.1 0.806 73.8 131.1 71.3 32.7 5.9 -8.7 -6.9 32 31 A G < + 0 0 26 -5,-2.6 2,-0.3 -6,-0.2 -4,-0.2 0.115 46.8 68.2-112.1 14.2 8.5 -8.3 -4.2 33 32 A A - 0 0 8 -6,-0.5 54,-0.2 -5,-0.1 3,-0.1 -0.938 59.0-151.2-127.3 161.3 6.5 -7.3 -1.2 34 33 A K S S+ 0 0 113 52,-3.1 2,-0.3 1,-0.3 53,-0.2 0.525 84.7 12.1-104.3 -13.3 3.9 -9.0 1.0 35 34 A L E -B 86 0A 0 51,-0.8 51,-2.7 24,-0.1 2,-0.4 -0.915 60.3-152.5-161.3 137.5 1.9 -5.9 2.0 36 35 A I E -Bc 85 61A 0 24,-2.1 26,-2.8 -2,-0.3 2,-0.4 -0.975 13.4-163.2-111.5 134.0 1.9 -2.3 0.9 37 36 A I E -Bc 84 62A 0 47,-3.1 47,-2.3 -2,-0.4 2,-0.4 -0.948 6.4-171.1-116.7 131.3 0.8 0.3 3.5 38 37 A V E -Bc 83 63A 1 24,-2.3 26,-2.6 -2,-0.4 45,-0.3 -0.968 23.5-120.5-121.9 140.9 -0.3 3.8 2.4 39 38 A A E > - c 0 64A 0 43,-3.0 3,-2.0 -2,-0.4 28,-0.2 -0.456 31.9-112.4 -69.5 155.0 -1.0 6.9 4.5 40 39 A R T 3 S+ 0 0 124 26,-1.9 27,-0.2 24,-0.7 -1,-0.1 0.816 117.5 48.5 -62.2 -27.6 -4.5 8.3 4.2 41 40 A N T 3 S+ 0 0 81 25,-0.4 -1,-0.3 2,-0.0 26,-0.1 0.197 76.1 139.1-101.7 17.6 -3.0 11.4 2.5 42 41 A A S < S- 0 0 5 -3,-2.0 5,-0.1 40,-0.2 -4,-0.0 -0.326 72.2 -86.0 -52.7 140.5 -0.8 9.6 0.0 43 42 A R >> - 0 0 144 1,-0.1 4,-2.6 3,-0.1 3,-0.9 -0.292 39.8-120.3 -53.8 132.7 -1.1 11.5 -3.3 44 43 A P H 3> S+ 0 0 86 0, 0.0 4,-2.6 0, 0.0 5,-0.1 0.821 111.4 48.1 -46.6 -46.6 -4.1 10.1 -5.2 45 44 A D H 3> S+ 0 0 71 2,-0.2 4,-2.5 1,-0.2 5,-0.1 0.842 112.0 50.8 -68.7 -31.8 -2.2 8.9 -8.3 46 45 A I H <> S+ 0 0 21 -3,-0.9 4,-2.7 2,-0.2 5,-0.2 0.907 110.6 48.9 -69.3 -45.1 0.4 7.2 -6.0 47 46 A K H X S+ 0 0 41 -4,-2.6 4,-3.0 2,-0.2 5,-0.2 0.949 113.7 47.5 -53.3 -49.7 -2.5 5.5 -4.1 48 47 A E H X S+ 0 0 127 -4,-2.6 4,-2.2 -5,-0.2 -2,-0.2 0.911 112.2 47.4 -65.1 -41.9 -4.0 4.4 -7.4 49 48 A D H X S+ 0 0 67 -4,-2.5 4,-2.9 2,-0.2 5,-0.3 0.939 114.2 48.0 -61.5 -48.4 -0.7 3.1 -8.9 50 49 A I H X S+ 0 0 0 -4,-2.7 4,-2.6 1,-0.2 5,-0.3 0.947 112.7 48.2 -56.5 -50.0 0.1 1.2 -5.7 51 50 A E H X S+ 0 0 93 -4,-3.0 4,-2.0 -5,-0.2 -1,-0.2 0.895 114.8 47.3 -58.1 -38.7 -3.4 -0.3 -5.6 52 51 A Y H X S+ 0 0 122 -4,-2.2 4,-2.1 -5,-0.2 -2,-0.2 0.966 114.1 42.8 -69.1 -55.6 -3.2 -1.3 -9.3 53 52 A Y H X S+ 0 0 56 -4,-2.9 4,-1.2 1,-0.2 -2,-0.2 0.892 114.6 51.9 -63.1 -36.0 0.3 -2.9 -9.2 54 53 A A H >X>S+ 0 0 0 -4,-2.6 5,-2.4 -5,-0.3 4,-1.4 0.936 107.9 52.8 -66.3 -42.3 -0.5 -4.7 -6.0 55 54 A R H 3<5S+ 0 0 220 -4,-2.0 3,-0.2 -5,-0.3 -2,-0.2 0.884 103.3 57.5 -60.3 -36.6 -3.7 -6.0 -7.6 56 55 A L H 3<5S+ 0 0 116 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.857 117.5 32.9 -58.6 -35.2 -1.7 -7.4 -10.5 57 56 A S H <<5S- 0 0 56 -4,-1.2 -1,-0.2 -3,-0.6 -2,-0.2 0.485 111.6-110.2-103.7 -7.4 0.4 -9.5 -8.1 58 57 A G T <5 + 0 0 66 -4,-1.4 -3,-0.2 1,-0.3 -4,-0.1 0.783 64.5 151.4 79.8 29.6 -2.1 -10.4 -5.4 59 58 A I < - 0 0 17 -5,-2.4 -1,-0.3 -6,-0.2 -24,-0.1 -0.819 44.2-125.3 -96.0 126.4 -0.4 -8.1 -2.8 60 59 A P - 0 0 44 0, 0.0 -24,-2.1 0, 0.0 2,-0.4 -0.365 18.9-150.9 -70.2 150.2 -2.7 -6.7 -0.1 61 60 A V E -c 36 0A 51 -26,-0.2 2,-0.4 37,-0.1 -24,-0.2 -0.992 8.9-167.1-123.8 131.4 -2.8 -3.0 0.4 62 61 A Y E -c 37 0A 70 -26,-2.8 -24,-2.3 -2,-0.4 2,-0.7 -0.964 13.6-142.6-119.7 129.3 -3.7 -1.4 3.8 63 62 A E E -c 38 0A 92 -2,-0.4 2,-0.2 -26,-0.2 -24,-0.2 -0.855 17.2-139.0 -93.8 115.4 -4.5 2.3 4.3 64 63 A F E -c 39 0A 12 -26,-2.6 -24,-0.7 -2,-0.7 7,-0.1 -0.509 13.5-132.2 -65.3 135.3 -3.1 3.6 7.6 65 64 A E S S+ 0 0 160 -2,-0.2 2,-0.1 -26,-0.1 -1,-0.1 0.614 81.1 67.2 -72.0 -11.9 -5.6 5.9 9.3 66 65 A G S S- 0 0 1 1,-0.2 -26,-1.9 2,-0.0 -25,-0.4 -0.434 88.3 -87.2-100.8 179.6 -3.1 8.7 10.0 67 66 A T > - 0 0 32 -28,-0.2 4,-2.8 -27,-0.2 5,-0.2 -0.291 39.0-102.0 -79.9 171.4 -1.1 11.1 7.9 68 67 A S H > S+ 0 0 12 1,-0.2 4,-2.0 2,-0.2 13,-1.9 0.764 124.0 57.3 -59.9 -27.1 2.2 10.7 6.3 69 68 A V H > S+ 0 0 85 11,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.940 109.6 43.7 -65.9 -48.8 3.6 12.8 9.1 70 69 A E H > S+ 0 0 85 2,-0.2 4,-2.5 1,-0.2 -2,-0.2 0.900 113.7 50.7 -65.7 -40.9 2.3 10.3 11.7 71 70 A L H X S+ 0 0 0 -4,-2.8 4,-1.9 2,-0.2 -1,-0.2 0.934 110.5 49.5 -63.6 -43.9 3.4 7.3 9.6 72 71 A G H <>S+ 0 0 0 -4,-2.0 5,-2.8 9,-0.2 -2,-0.2 0.929 111.3 49.6 -58.1 -46.1 6.9 8.8 9.3 73 72 A T H ><5S+ 0 0 94 -4,-2.3 3,-1.7 1,-0.2 -1,-0.2 0.901 107.7 52.9 -63.0 -41.9 7.0 9.4 13.1 74 73 A L H 3<5S+ 0 0 63 -4,-2.5 -1,-0.2 1,-0.3 -2,-0.2 0.884 108.6 52.2 -58.8 -37.1 5.9 5.8 13.8 75 74 A L T 3<5S- 0 0 3 -4,-1.9 -1,-0.3 -5,-0.2 -2,-0.2 0.306 122.5-106.2 -85.7 8.4 8.7 4.6 11.6 76 75 A G T < 5S+ 0 0 66 -3,-1.7 -3,-0.2 1,-0.3 -2,-0.1 0.636 77.5 131.7 79.1 16.4 11.3 6.7 13.5 77 76 A R < - 0 0 108 -5,-2.8 -1,-0.3 -6,-0.2 -2,-0.1 -0.822 56.2-146.7-106.1 140.1 11.8 9.3 10.7 78 77 A P S S+ 0 0 133 0, 0.0 2,-0.3 0, 0.0 -5,-0.1 0.180 83.4 61.8 -84.1 19.3 11.7 13.0 11.1 79 78 A H S S- 0 0 88 -7,-0.1 -2,-0.2 -11,-0.1 2,-0.1 -0.834 96.5 -77.8-134.6 168.5 10.1 13.3 7.6 80 79 A T - 0 0 84 -2,-0.3 2,-0.4 -8,-0.1 -11,-0.2 -0.384 32.6-169.0 -66.5 147.4 6.9 12.2 5.9 81 80 A V + 0 0 4 -13,-1.9 -9,-0.2 -2,-0.1 -10,-0.2 -0.948 8.4 176.2-133.2 113.5 6.4 8.7 4.7 82 81 A S + 0 0 28 -2,-0.4 -43,-3.0 1,-0.2 2,-0.3 0.633 68.1 7.8 -96.1 -13.1 3.3 8.3 2.5 83 82 A A E + B 0 38A 0 -45,-0.3 -63,-2.9 -15,-0.1 2,-0.3 -0.983 58.4 179.3-159.8 156.4 3.8 4.6 1.7 84 83 A L E -AB 19 37A 0 -47,-2.3 -47,-3.1 -2,-0.3 2,-0.4 -0.975 18.9-135.8-153.4 159.5 6.0 1.6 2.6 85 84 A A E -AB 18 36A 0 -67,-2.8 -67,-2.5 -2,-0.3 2,-0.8 -0.974 11.4-140.1-122.2 132.6 6.2 -2.1 1.6 86 85 A V E +AB 17 35A 0 -51,-2.7 -52,-3.1 -2,-0.4 -51,-0.8 -0.832 25.1 171.9 -87.7 113.0 6.7 -5.0 4.0 87 86 A V E S+ 0 0 27 -71,-2.3 -70,-0.2 -2,-0.8 -1,-0.2 0.884 76.2 11.0 -85.8 -48.3 9.2 -7.3 2.3 88 87 A D E -A 16 0A 71 -72,-2.1 -72,-2.7 -77,-0.1 -1,-0.4 -0.997 65.5-152.7-132.8 123.6 9.7 -9.7 5.2 89 88 A P > - 0 0 25 0, 0.0 3,-2.1 0, 0.0 5,-0.3 0.558 28.0-164.2 -73.9 -8.3 7.3 -9.4 8.2 90 89 A G T 3 - 0 0 30 1,-0.3 -75,-0.2 -76,-0.2 -79,-0.1 -0.379 65.2 -24.1 60.8-133.7 10.0 -10.8 10.5 91 90 A A T 3 S+ 0 0 66 -81,-0.4 -1,-0.3 -2,-0.1 -80,-0.1 0.341 115.1 110.6 -89.9 6.1 8.5 -12.0 13.9 92 91 A S < - 0 0 16 -3,-2.1 3,-0.3 -82,-0.1 -85,-0.1 -0.302 68.3-139.2 -88.1 162.6 5.6 -9.6 13.5 93 92 A R > + 0 0 126 1,-0.2 3,-1.9 -90,-0.1 4,-0.3 0.070 65.9 121.3 -97.8 16.6 1.8 -10.1 12.8 94 93 A I G > + 0 0 0 -87,-0.3 3,-1.5 -5,-0.3 4,-0.2 0.799 62.7 63.3 -58.8 -31.5 1.7 -7.2 10.4 95 94 A L G > S+ 0 0 56 -3,-0.3 3,-1.7 1,-0.3 -1,-0.3 0.675 82.4 79.1 -71.9 -12.9 0.5 -9.3 7.4 96 95 A A G X S+ 0 0 59 -3,-1.9 3,-1.5 1,-0.3 -1,-0.3 0.775 81.6 68.4 -60.6 -24.5 -2.7 -10.1 9.3 97 96 A L G < S+ 0 0 39 -3,-1.5 -1,-0.3 -4,-0.3 -2,-0.2 0.673 83.6 71.5 -68.2 -19.3 -3.8 -6.6 8.2 98 97 A G G < 0 0 30 -3,-1.7 -1,-0.3 -4,-0.2 -2,-0.2 0.515 360.0 360.0 -74.3 -7.4 -3.9 -7.8 4.6 99 98 A G < 0 0 109 -3,-1.5 -1,-0.2 -4,-0.2 -2,-0.1 0.055 360.0 360.0 90.3 360.0 -7.0 -9.8 5.6