==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 22-JUL-04 1W42 . COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L30E; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS CELER; . AUTHOR C.F.LEE,K.M.LEE,S.H.CHAN,M.D.ALLEN,M.BYCROFT,K.B.WONG . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5641.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 68.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 5.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 11.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 34.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 0 A M 0 0 236 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 146.6 17.4 7.5 17.6 2 1 A V - 0 0 32 91,-0.1 2,-0.9 1,-0.1 3,-0.1 -0.537 360.0-149.0 -67.0 120.7 14.5 6.0 15.6 3 2 A D > - 0 0 93 -2,-0.4 4,-2.8 1,-0.2 5,-0.3 -0.843 16.2-157.5 -82.0 103.5 13.0 3.0 17.4 4 3 A F H > S+ 0 0 26 -2,-0.9 4,-2.7 1,-0.2 5,-0.3 0.924 85.3 46.1 -57.5 -53.1 12.0 1.2 14.2 5 4 A A H > S+ 0 0 42 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.911 116.3 46.5 -56.8 -46.2 9.2 -0.9 15.6 6 5 A F H > S+ 0 0 108 1,-0.2 4,-2.5 2,-0.2 -2,-0.2 0.953 116.3 41.6 -63.1 -52.0 7.7 2.0 17.5 7 6 A E H X S+ 0 0 28 -4,-2.8 4,-2.4 2,-0.2 87,-0.3 0.854 112.9 54.3 -68.5 -33.6 7.8 4.6 14.7 8 7 A L H X S+ 0 0 2 -4,-2.7 4,-2.2 -5,-0.3 -1,-0.2 0.950 112.7 42.8 -64.3 -47.2 6.6 2.0 12.1 9 8 A R H X S+ 0 0 157 -4,-2.0 4,-2.5 -5,-0.3 -2,-0.2 0.906 112.9 54.0 -64.4 -39.5 3.5 1.1 14.2 10 9 A K H X S+ 0 0 61 -4,-2.5 4,-2.1 1,-0.2 81,-0.4 0.880 109.0 48.6 -64.0 -37.4 3.0 4.9 14.9 11 10 A A H X S+ 0 0 0 -4,-2.4 4,-2.1 2,-0.2 -1,-0.2 0.911 111.7 49.9 -63.7 -45.0 3.0 5.5 11.1 12 11 A Q H < S+ 0 0 52 -4,-2.2 5,-0.3 1,-0.2 -2,-0.2 0.890 117.7 39.5 -59.1 -42.3 0.5 2.7 10.6 13 12 A D H < S+ 0 0 114 -4,-2.5 -2,-0.2 1,-0.1 -1,-0.2 0.768 129.7 25.2 -84.3 -30.9 -1.8 4.0 13.3 14 13 A T H < S+ 0 0 60 -4,-2.1 -3,-0.2 -5,-0.2 -2,-0.2 0.525 128.7 25.5-113.0 -11.4 -1.6 7.8 12.7 15 14 A G S < S- 0 0 22 -4,-2.1 2,-0.3 -5,-0.3 -3,-0.1 0.038 92.9 -82.5-121.3-131.7 -0.6 8.0 9.0 16 15 A K E +A 88 0A 106 72,-2.7 72,-2.2 -2,-0.1 71,-2.1 -0.911 38.6 171.9-152.7 118.1 -1.1 5.7 6.1 17 16 A I E -A 86 0A 26 -2,-0.3 2,-0.4 -5,-0.3 69,-0.2 -0.944 16.7-151.8-121.7 150.1 1.0 2.7 5.0 18 17 A V E -A 85 0A 6 67,-2.3 67,-2.8 -2,-0.3 2,-0.3 -0.981 16.0-137.0-124.4 138.3 0.3 0.2 2.3 19 18 A M E +A 84 0A 29 -2,-0.4 4,-0.3 65,-0.2 65,-0.3 -0.732 51.6 34.6-105.2 141.1 1.6 -3.3 2.4 20 19 A G S > S- 0 0 25 63,-3.4 4,-2.3 -2,-0.3 5,-0.2 0.023 78.9 -88.1 106.5 153.7 3.2 -5.6 -0.3 21 20 A A H > S+ 0 0 28 2,-0.2 4,-2.4 1,-0.2 5,-0.2 0.885 119.6 55.3 -59.2 -45.0 5.5 -5.4 -3.3 22 21 A R H > S+ 0 0 166 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.955 113.5 39.1 -56.5 -56.4 2.7 -4.7 -5.8 23 22 A K H > S+ 0 0 77 -4,-0.3 4,-2.5 1,-0.2 5,-0.2 0.881 112.7 57.1 -62.9 -41.0 1.3 -1.7 -4.0 24 23 A S H X S+ 0 0 0 -4,-2.3 4,-1.9 1,-0.2 -1,-0.2 0.888 109.6 46.2 -56.8 -40.9 4.8 -0.5 -3.1 25 24 A I H X S+ 0 0 26 -4,-2.4 4,-2.8 2,-0.2 -2,-0.2 0.924 110.3 52.4 -67.9 -47.1 5.7 -0.4 -6.8 26 25 A Q H X S+ 0 0 83 -4,-2.2 4,-1.7 1,-0.2 -2,-0.2 0.918 112.2 45.2 -53.3 -48.8 2.5 1.3 -7.8 27 26 A Y H X>S+ 0 0 50 -4,-2.5 5,-3.2 1,-0.2 4,-0.7 0.882 111.6 53.5 -65.4 -38.9 3.1 4.1 -5.3 28 27 A A H ><5S+ 0 0 0 -4,-1.9 3,-0.8 -5,-0.2 -2,-0.2 0.923 107.1 51.0 -60.5 -45.1 6.8 4.3 -6.4 29 28 A K H 3<5S+ 0 0 130 -4,-2.8 -1,-0.2 1,-0.2 -2,-0.2 0.883 115.6 41.6 -59.8 -40.6 5.8 4.8 -10.1 30 29 A M H 3<5S- 0 0 125 -4,-1.7 -1,-0.2 -5,-0.2 -2,-0.2 0.479 112.1-119.2 -85.7 -5.8 3.4 7.6 -9.3 31 30 A G T <<5S+ 0 0 41 -3,-0.8 -3,-0.2 -4,-0.7 -4,-0.1 0.782 73.9 132.2 73.4 29.3 5.8 9.2 -6.7 32 31 A G < + 0 0 23 -5,-3.2 2,-0.3 -6,-0.2 -4,-0.2 0.593 43.3 78.4 -94.4 -14.7 3.2 8.6 -4.0 33 32 A A - 0 0 7 -6,-0.6 54,-0.2 -9,-0.1 3,-0.1 -0.684 55.9-160.6 -95.7 151.3 5.3 7.0 -1.3 34 33 A K S S+ 0 0 113 52,-3.5 2,-0.3 1,-0.4 53,-0.2 0.570 82.1 5.6-101.4 -17.6 7.6 8.9 1.1 35 34 A L E -B 86 0A 0 51,-1.0 51,-3.0 24,-0.1 2,-0.4 -0.927 61.6-151.8-161.6 141.7 9.6 5.8 2.0 36 35 A I E -Bc 85 61A 0 24,-2.1 26,-3.0 -2,-0.3 2,-0.5 -0.975 12.4-161.6-116.3 131.5 9.7 2.2 1.0 37 36 A I E -Bc 84 62A 0 47,-2.4 47,-2.2 -2,-0.4 2,-0.4 -0.962 7.2-170.0-113.8 129.9 10.8 -0.4 3.5 38 37 A V E -Bc 83 63A 1 24,-2.1 26,-2.5 -2,-0.5 45,-0.2 -0.964 23.2-121.5-121.1 136.5 11.9 -3.8 2.3 39 38 A A E > - c 0 64A 0 43,-2.8 3,-1.9 -2,-0.4 28,-0.2 -0.425 29.9-116.0 -67.3 151.4 12.6 -6.9 4.4 40 39 A R T 3 S+ 0 0 130 26,-1.9 27,-0.2 24,-0.9 -1,-0.1 0.789 115.8 49.8 -65.5 -24.8 16.1 -8.2 4.0 41 40 A N T 3 S+ 0 0 73 25,-0.4 -1,-0.3 2,-0.0 26,-0.1 0.173 77.0 137.0 -99.5 14.6 14.8 -11.5 2.5 42 41 A A S < S- 0 0 4 -3,-1.9 5,-0.1 40,-0.2 -4,-0.0 -0.331 76.0 -81.8 -54.9 142.4 12.5 -9.7 -0.1 43 42 A R >> - 0 0 150 1,-0.1 4,-2.7 3,-0.1 3,-0.5 -0.291 42.9-124.1 -52.8 129.6 12.8 -11.6 -3.4 44 43 A P H 3> S+ 0 0 91 0, 0.0 4,-2.3 0, 0.0 5,-0.1 0.834 108.8 46.4 -47.9 -46.0 16.0 -10.2 -5.1 45 44 A D H 3> S+ 0 0 71 2,-0.2 4,-2.1 1,-0.2 5,-0.1 0.864 113.8 49.5 -70.0 -34.2 14.2 -9.1 -8.4 46 45 A I H <> S+ 0 0 34 -3,-0.5 4,-2.7 2,-0.2 -1,-0.2 0.908 110.2 49.7 -67.5 -45.1 11.4 -7.5 -6.4 47 46 A K H X S+ 0 0 31 -4,-2.7 4,-2.9 1,-0.2 -2,-0.2 0.940 112.5 49.1 -56.8 -46.5 13.9 -5.6 -4.1 48 47 A E H X S+ 0 0 126 -4,-2.3 4,-2.3 -5,-0.3 -2,-0.2 0.878 110.5 49.5 -62.4 -41.1 15.7 -4.5 -7.3 49 48 A D H X S+ 0 0 71 -4,-2.1 4,-3.0 2,-0.2 5,-0.3 0.942 112.4 47.9 -61.9 -48.6 12.4 -3.3 -9.0 50 49 A I H X S+ 0 0 0 -4,-2.7 4,-2.6 1,-0.2 5,-0.2 0.940 112.3 49.0 -55.8 -48.9 11.5 -1.4 -5.9 51 50 A E H X S+ 0 0 89 -4,-2.9 4,-2.0 1,-0.2 -1,-0.2 0.884 113.2 48.8 -60.3 -40.1 14.9 0.2 -5.7 52 51 A Y H X S+ 0 0 120 -4,-2.3 4,-1.7 2,-0.2 -2,-0.2 0.968 113.9 42.2 -63.1 -57.2 14.7 1.1 -9.4 53 52 A Y H X S+ 0 0 58 -4,-3.0 4,-1.1 1,-0.2 -2,-0.2 0.862 114.6 52.3 -64.6 -33.3 11.3 2.7 -9.3 54 53 A A H X>S+ 0 0 0 -4,-2.6 5,-2.7 -5,-0.3 4,-1.0 0.907 107.2 53.1 -65.4 -41.9 12.1 4.5 -6.0 55 54 A R H <5S+ 0 0 216 -4,-2.0 3,-0.3 -5,-0.2 -2,-0.2 0.840 102.7 57.9 -62.2 -36.1 15.3 5.9 -7.5 56 55 A L H <5S+ 0 0 109 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.862 117.2 33.6 -60.4 -37.1 13.3 7.3 -10.5 57 56 A S H <5S- 0 0 55 -4,-1.1 -1,-0.2 -3,-0.4 -2,-0.2 0.436 111.6-113.4 -99.1 -5.4 11.1 9.4 -8.1 58 57 A G T <5 + 0 0 63 -4,-1.0 -3,-0.2 -3,-0.3 -4,-0.1 0.783 61.8 154.1 73.9 29.1 13.7 10.1 -5.4 59 58 A I < - 0 0 15 -5,-2.7 -1,-0.3 -6,-0.2 -24,-0.1 -0.781 43.7-123.5 -91.3 124.8 11.9 8.0 -2.8 60 59 A P - 0 0 45 0, 0.0 -24,-2.1 0, 0.0 2,-0.4 -0.398 20.2-151.3 -66.5 144.6 14.2 6.7 -0.1 61 60 A V E -c 36 0A 49 -26,-0.2 2,-0.5 37,-0.1 -24,-0.2 -0.969 7.8-164.5-115.7 135.7 14.4 2.9 0.4 62 61 A Y E -c 37 0A 69 -26,-3.0 -24,-2.1 -2,-0.4 2,-0.7 -0.982 12.6-142.1-122.1 127.1 15.2 1.4 3.8 63 62 A E E -c 38 0A 102 -2,-0.5 2,-0.3 -26,-0.2 -24,-0.2 -0.788 16.9-138.9 -90.2 114.4 16.2 -2.2 4.3 64 63 A F E -c 39 0A 23 -26,-2.5 -24,-0.9 -2,-0.7 7,-0.1 -0.529 11.7-134.0 -68.4 131.9 14.7 -3.7 7.5 65 64 A E S S+ 0 0 169 -2,-0.3 -1,-0.1 -26,-0.1 2,-0.1 0.661 80.8 67.7 -64.7 -18.0 17.3 -5.9 9.2 66 65 A G S S- 0 0 6 1,-0.2 -26,-1.9 2,-0.0 -25,-0.4 -0.289 87.9 -87.4-100.9-178.4 14.7 -8.7 9.8 67 66 A T > - 0 0 33 -28,-0.2 4,-2.3 -27,-0.2 5,-0.2 -0.315 40.2-102.6 -83.4 171.6 12.8 -11.2 7.7 68 67 A S H > S+ 0 0 8 1,-0.2 4,-2.1 2,-0.2 13,-1.9 0.756 124.4 57.2 -63.3 -26.5 9.4 -10.8 6.1 69 68 A V H > S+ 0 0 86 11,-0.2 4,-2.7 2,-0.2 -1,-0.2 0.945 107.6 45.5 -65.9 -50.9 8.0 -12.8 9.0 70 69 A E H > S+ 0 0 99 2,-0.2 4,-2.4 1,-0.2 -2,-0.2 0.886 114.3 49.3 -59.8 -40.7 9.4 -10.3 11.5 71 70 A L H X S+ 0 0 0 -4,-2.3 4,-2.1 2,-0.2 -1,-0.2 0.929 110.9 49.0 -66.8 -45.3 8.1 -7.4 9.5 72 71 A G H <>S+ 0 0 0 -4,-2.1 5,-2.8 9,-0.2 4,-0.3 0.944 111.6 50.2 -58.2 -46.9 4.6 -8.9 9.1 73 72 A T H ><5S+ 0 0 98 -4,-2.7 3,-1.4 1,-0.2 -2,-0.2 0.913 108.5 51.6 -59.2 -44.1 4.5 -9.6 12.9 74 73 A L H 3<5S+ 0 0 62 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.900 109.2 51.8 -56.6 -39.9 5.5 -6.0 13.6 75 74 A L T 3<5S- 0 0 4 -4,-2.1 -1,-0.3 -5,-0.1 -2,-0.2 0.381 121.1-108.1 -82.4 4.3 2.7 -4.8 11.3 76 75 A G T < 5S+ 0 0 64 -3,-1.4 -3,-0.2 -4,-0.3 -2,-0.1 0.667 75.4 134.2 79.1 19.7 0.1 -7.0 13.2 77 76 A R < - 0 0 108 -5,-2.8 -1,-0.3 -6,-0.2 -2,-0.1 -0.790 56.3-146.3-107.6 145.2 -0.2 -9.5 10.4 78 77 A P S S+ 0 0 131 0, 0.0 2,-0.2 0, 0.0 -5,-0.1 0.325 84.3 62.0 -84.3 7.2 -0.2 -13.3 10.5 79 78 A H S S- 0 0 85 -7,-0.1 -2,-0.2 1,-0.1 2,-0.0 -0.772 95.8 -81.8-126.3 169.9 1.5 -13.5 7.1 80 79 A T - 0 0 79 -2,-0.2 2,-0.4 -8,-0.1 -11,-0.2 -0.340 30.8-161.8 -70.9 150.3 4.8 -12.3 5.6 81 80 A V + 0 0 4 -13,-1.9 -9,-0.2 1,-0.1 -10,-0.2 -0.954 11.4 176.7-131.9 116.5 5.3 -8.7 4.5 82 81 A S + 0 0 40 -2,-0.4 -43,-2.8 1,-0.3 2,-0.3 0.726 69.1 4.1 -91.6 -26.2 8.3 -8.3 2.1 83 82 A A E - B 0 38A 0 -45,-0.2 -63,-3.4 -15,-0.1 2,-0.3 -0.991 59.1-177.0-156.7 153.5 7.8 -4.6 1.4 84 83 A L E -AB 19 37A 0 -47,-2.2 -47,-2.4 -2,-0.3 2,-0.5 -0.974 17.9-135.1-148.9 160.1 5.6 -1.6 2.4 85 84 A A E -AB 18 36A 0 -67,-2.8 -67,-2.3 -2,-0.3 2,-0.9 -0.980 9.2-143.2-122.6 129.3 5.2 2.0 1.5 86 85 A V E +AB 17 35A 0 -51,-3.0 -52,-3.5 -2,-0.5 -51,-1.0 -0.822 26.4 168.7 -87.3 108.4 4.8 4.9 3.9 87 86 A V E S+ 0 0 27 -71,-2.1 -70,-0.2 -2,-0.9 -1,-0.2 0.818 76.0 13.0 -86.2 -38.3 2.4 7.2 2.1 88 87 A D E -A 16 0A 73 -72,-2.2 -72,-2.7 -3,-0.2 -1,-0.4 -0.969 63.9-155.1-142.6 118.1 1.8 9.4 5.2 89 88 A P > - 0 0 24 0, 0.0 3,-2.1 0, 0.0 5,-0.3 0.592 27.4-163.3 -72.4 -9.4 4.1 9.2 8.2 90 89 A G T 3 - 0 0 29 1,-0.3 -75,-0.2 -76,-0.2 -79,-0.1 -0.444 65.9 -26.0 63.1-130.5 1.3 10.6 10.5 91 90 A E T 3 S+ 0 0 151 -81,-0.4 -1,-0.3 -2,-0.1 -80,-0.1 0.332 115.1 110.9 -93.6 3.0 2.8 11.8 13.8 92 91 A S < - 0 0 16 -3,-2.1 3,-0.3 -82,-0.2 -85,-0.1 -0.283 68.0-138.8 -84.3 163.8 5.7 9.4 13.4 93 92 A A > + 0 0 49 1,-0.2 3,-1.7 2,-0.1 4,-0.3 0.059 65.3 121.7-101.7 20.6 9.4 10.0 12.8 94 93 A I G > + 0 0 0 -87,-0.3 3,-1.5 -5,-0.3 -1,-0.2 0.776 62.1 66.7 -58.2 -28.1 9.7 7.0 10.4 95 94 A L G > S+ 0 0 55 1,-0.3 3,-2.0 -3,-0.3 -1,-0.3 0.692 78.6 80.4 -74.1 -14.3 10.9 9.2 7.5 96 95 A A G X S+ 0 0 67 -3,-1.7 3,-1.6 1,-0.3 -1,-0.3 0.754 79.0 72.0 -56.4 -25.1 14.2 9.9 9.4 97 96 A L G < S+ 0 0 38 -3,-1.5 -1,-0.3 -4,-0.3 -2,-0.2 0.667 81.5 71.4 -64.7 -19.8 15.2 6.4 8.1 98 97 A G G < 0 0 33 -3,-2.0 -1,-0.3 -4,-0.1 -2,-0.2 0.550 360.0 360.0 -72.6 -9.9 15.5 8.0 4.6 99 98 A G < 0 0 114 -3,-1.6 -3,-0.1 -4,-0.2 -2,-0.1 0.481 360.0 360.0 85.2 360.0 18.6 9.9 5.7