==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 24-MAY-04 1WEE . COMPND 2 MOLECULE: PHD FINGER FAMILY PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, . 72 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6431.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 23 31.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 4.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 5.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 5 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 127 0, 0.0 2,-0.0 0, 0.0 61,-0.0 0.000 360.0 360.0 360.0-170.2 1.3 -7.1 15.0 2 2 A S - 0 0 110 1,-0.1 2,-0.3 0, 0.0 0, 0.0 -0.305 360.0-140.3 -75.1 161.6 3.4 -4.1 16.2 3 3 A S - 0 0 113 -2,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.786 7.7-124.6-121.1 164.8 2.3 -2.0 19.1 4 4 A G - 0 0 73 -2,-0.3 3,-0.1 1,-0.1 0, 0.0 -0.848 18.3-179.4-113.1 148.5 2.4 1.7 19.9 5 5 A S S S+ 0 0 121 1,-0.4 2,-0.3 -2,-0.3 -1,-0.1 0.663 72.6 0.7-112.1 -29.9 4.0 3.6 22.8 6 6 A S + 0 0 116 2,-0.0 -1,-0.4 0, 0.0 2,-0.2 -0.940 63.1 141.5-152.1 171.4 3.1 7.2 22.0 7 7 A G + 0 0 66 -2,-0.3 2,-0.3 -3,-0.1 -3,-0.0 -0.704 10.7 177.3 156.5 151.7 1.2 9.3 19.5 8 8 A M - 0 0 179 -2,-0.2 2,-1.9 2,-0.1 -2,-0.0 -0.959 43.5 -96.4-170.7 154.2 -1.0 12.3 19.0 9 9 A E S S+ 0 0 201 -2,-0.3 2,-0.2 2,-0.1 -2,-0.0 -0.547 88.2 89.7 -80.0 80.1 -2.7 14.4 16.3 10 10 A R + 0 0 235 -2,-1.9 2,-0.3 3,-0.1 -2,-0.1 -0.783 62.0 40.0-175.0 127.3 -0.1 17.2 16.1 11 11 A G S S+ 0 0 64 -2,-0.2 2,-0.1 1,-0.1 -2,-0.1 -0.795 88.1 59.8 139.1 -96.1 3.0 17.8 14.0 12 12 A V S S- 0 0 42 -2,-0.3 -1,-0.1 1,-0.1 13,-0.1 -0.430 83.8-110.7 -71.6 143.4 3.0 16.8 10.4 13 13 A D - 0 0 126 -2,-0.1 4,-0.2 -3,-0.1 -1,-0.1 0.151 56.6 -62.0 -59.6-174.9 0.5 18.5 8.1 14 14 A N S S+ 0 0 155 2,-0.1 -2,-0.1 3,-0.0 3,-0.1 0.887 114.4 85.6 -34.2 -75.0 -2.5 16.6 6.6 15 15 A W S S- 0 0 106 1,-0.1 2,-0.9 24,-0.1 24,-0.1 -0.038 83.9-133.6 -36.0 113.5 -0.3 14.2 4.5 16 16 A K E -a 39 0A 115 22,-0.7 24,-2.7 1,-0.0 2,-0.7 -0.677 27.3-178.3 -81.1 107.4 0.4 11.4 7.0 17 17 A V E +a 40 0A 2 -2,-0.9 2,-0.3 7,-0.4 24,-0.1 -0.837 20.7 142.2-111.3 95.3 4.1 10.6 6.8 18 18 A D + 0 0 77 22,-0.9 2,-0.3 -2,-0.7 6,-0.1 -0.979 15.0 163.3-134.6 146.5 5.0 7.8 9.1 19 19 A C > - 0 0 21 4,-0.4 3,-0.7 -2,-0.3 4,-0.2 -0.989 51.9-102.3-158.0 156.4 7.4 4.9 8.9 20 20 A K T 3 S+ 0 0 188 -2,-0.3 -1,-0.1 1,-0.3 0, 0.0 0.839 118.6 63.6 -48.6 -36.2 9.2 2.3 11.1 21 21 A C T 3 S- 0 0 78 1,-0.1 -1,-0.3 -3,-0.0 -3,-0.0 0.943 117.2-110.0 -55.2 -52.3 12.3 4.4 10.7 22 22 A G < + 0 0 66 -3,-0.7 2,-0.3 1,-0.2 -2,-0.1 0.599 60.3 152.9 125.0 27.9 10.7 7.3 12.5 23 23 A T + 0 0 25 -4,-0.2 -4,-0.4 1,-0.1 -1,-0.2 -0.695 19.2 173.9 -90.2 138.1 10.2 10.0 9.9 24 24 A K + 0 0 106 -2,-0.3 -7,-0.4 1,-0.2 2,-0.3 0.461 68.8 34.0-117.1 -9.6 7.4 12.5 10.2 25 25 A D S S- 0 0 71 -13,-0.1 2,-0.7 -9,-0.1 -1,-0.2 -0.960 102.6 -73.0-144.3 160.4 8.2 14.7 7.2 26 26 A D + 0 0 88 -2,-0.3 4,-0.1 1,-0.2 5,-0.0 -0.365 48.1 176.9 -57.1 101.8 9.6 14.3 3.7 27 27 A D - 0 0 125 -2,-0.7 -1,-0.2 2,-0.2 3,-0.1 0.952 58.2 -83.3 -73.8 -52.4 13.3 13.7 4.4 28 28 A G S S+ 0 0 51 1,-0.4 2,-0.4 2,-0.0 -2,-0.1 0.207 94.8 106.4 169.1 -23.1 14.4 13.2 0.8 29 29 A E S S- 0 0 108 1,-0.1 -1,-0.4 13,-0.0 -2,-0.2 -0.656 79.6 -98.7 -83.6 132.1 13.7 9.6 -0.1 30 30 A R - 0 0 181 -2,-0.4 13,-1.5 12,-0.1 14,-0.4 -0.031 47.4-170.1 -45.0 147.9 10.8 9.0 -2.5 31 31 A M E -B 42 0A 20 11,-0.2 2,-0.3 12,-0.1 11,-0.2 -0.882 13.9-150.0-139.4 170.3 7.5 8.0 -0.8 32 32 A L E -B 41 0A 18 9,-1.5 9,-1.9 -2,-0.3 2,-0.3 -0.996 18.8-122.1-147.6 139.5 4.1 6.7 -1.7 33 33 A A E -B 40 0A 42 -2,-0.3 2,-1.0 7,-0.3 25,-0.3 -0.600 32.3-112.9 -82.5 139.4 0.6 7.0 -0.1 34 34 A C - 0 0 0 5,-1.0 4,-0.4 -2,-0.3 25,-0.2 -0.597 18.5-148.4 -74.8 102.0 -1.2 3.9 0.9 35 35 A D S S+ 0 0 109 -2,-1.0 -1,-0.2 23,-0.5 24,-0.2 0.801 95.8 59.6 -37.7 -36.0 -4.2 3.8 -1.4 36 36 A G S S- 0 0 40 22,-0.7 -1,-0.2 3,-0.1 23,-0.1 0.994 133.7 -8.5 -59.1 -71.2 -6.0 2.1 1.5 37 37 A C S S- 0 0 65 2,-0.1 -2,-0.1 -3,-0.1 22,-0.1 0.887 96.3-110.3 -94.4 -54.9 -5.7 4.7 4.2 38 38 A G + 0 0 32 -4,-0.4 -22,-0.7 1,-0.2 2,-0.5 0.673 57.6 149.3 123.2 43.9 -3.4 7.3 2.7 39 39 A V E -a 16 0A 20 -5,-0.1 -5,-1.0 -24,-0.1 2,-0.3 -0.914 43.1-127.6-110.6 129.4 -0.1 7.2 4.5 40 40 A W E -aB 17 33A 94 -24,-2.7 -22,-0.9 -2,-0.5 2,-0.3 -0.564 33.5-179.9 -75.5 130.4 3.2 8.1 2.8 41 41 A H E - B 0 32A 42 -9,-1.9 -9,-1.5 -2,-0.3 2,-0.7 -0.868 38.1 -88.1-128.9 162.6 5.9 5.4 3.3 42 42 A H E > - B 0 31A 15 -2,-0.3 4,-2.4 -11,-0.2 5,-0.3 -0.592 27.9-150.6 -73.9 110.9 9.5 5.0 2.2 43 43 A T T 4>S+ 0 0 12 -13,-1.5 5,-1.2 -2,-0.7 4,-0.4 0.738 99.4 50.5 -52.3 -22.5 9.4 3.3 -1.3 44 44 A R T >45S+ 0 0 162 -14,-0.4 3,-0.6 3,-0.2 4,-0.3 0.926 106.7 49.7 -81.9 -50.4 12.8 1.8 -0.2 45 45 A C T 345S+ 0 0 58 1,-0.3 -2,-0.2 2,-0.2 -1,-0.1 0.927 109.6 52.2 -54.2 -49.2 11.8 0.4 3.2 46 46 A I T 3<5S- 0 0 59 -4,-2.4 -1,-0.3 2,-0.1 -2,-0.2 0.795 131.0 -94.9 -58.9 -28.4 8.7 -1.3 1.7 47 47 A G T < 5S+ 0 0 59 -3,-0.6 2,-0.3 -4,-0.4 -3,-0.2 0.782 82.2 116.2 111.8 56.4 11.0 -2.9 -0.8 48 48 A I < - 0 0 38 -5,-1.2 2,-0.3 -4,-0.3 -1,-0.3 -0.985 38.9-160.6-153.9 141.1 11.1 -0.8 -4.0 49 49 A N > - 0 0 72 -2,-0.3 3,-1.4 4,-0.1 -5,-0.0 -0.916 36.6-109.9-124.2 150.4 13.7 1.3 -5.9 50 50 A N T 3 S+ 0 0 158 -2,-0.3 -1,-0.1 1,-0.3 4,-0.0 0.855 110.7 76.0 -41.1 -43.8 13.3 4.0 -8.5 51 51 A A T 3 S+ 0 0 85 -3,-0.0 -1,-0.3 2,-0.0 2,-0.1 0.871 97.2 47.5 -34.2 -59.9 14.6 1.5 -11.1 52 52 A D S < S- 0 0 112 -3,-1.4 2,-0.0 1,-0.1 -4,-0.0 -0.394 96.5-103.7 -84.1 163.9 11.2 -0.2 -11.1 53 53 A A - 0 0 71 -2,-0.1 -1,-0.1 1,-0.1 -4,-0.1 -0.225 39.1 -93.9 -80.3 173.9 7.9 1.5 -11.5 54 54 A L - 0 0 96 1,-0.1 2,-0.2 -6,-0.1 -1,-0.1 -0.683 39.8-106.0 -93.2 144.3 5.4 2.1 -8.7 55 55 A P - 0 0 55 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.467 22.9-125.2 -69.7 132.4 2.5 -0.3 -7.9 56 56 A S S S+ 0 0 124 -2,-0.2 2,-0.4 1,-0.2 -2,-0.0 0.857 97.6 14.8 -42.8 -42.6 -1.0 0.9 -9.0 57 57 A K - 0 0 159 -23,-0.0 2,-0.4 2,-0.0 -1,-0.2 -0.999 66.7-168.4-140.2 140.0 -2.1 0.3 -5.4 58 58 A F - 0 0 40 -2,-0.4 -22,-0.7 -25,-0.3 -23,-0.5 -0.968 6.5-166.4-133.3 118.1 -0.2 -0.2 -2.2 59 59 A L - 0 0 95 -2,-0.4 2,-0.1 -25,-0.2 -24,-0.0 -0.808 12.7-138.4-104.7 143.9 -1.8 -1.3 1.1 60 60 A C > - 0 0 15 -2,-0.4 4,-1.7 1,-0.1 3,-0.2 -0.343 30.1-101.4 -91.3 175.4 -0.2 -1.2 4.5 61 61 A F H > S+ 0 0 125 1,-0.2 4,-0.7 2,-0.2 5,-0.2 0.861 122.5 56.3 -64.7 -36.3 -0.2 -3.8 7.3 62 62 A R H > S+ 0 0 180 1,-0.2 4,-1.6 2,-0.2 3,-0.4 0.834 105.6 52.1 -64.8 -32.8 -2.9 -1.7 9.2 63 63 A C H > S+ 0 0 2 -3,-0.2 4,-3.1 2,-0.2 -1,-0.2 0.912 89.5 76.4 -69.9 -44.0 -5.1 -1.9 6.1 64 64 A I H < S+ 0 0 135 -4,-1.7 -1,-0.2 1,-0.3 -2,-0.2 0.818 114.2 24.5 -34.0 -43.9 -4.9 -5.7 5.8 65 65 A E H < S+ 0 0 179 -4,-0.7 -1,-0.3 -3,-0.4 -2,-0.2 0.752 115.5 66.5 -94.7 -30.6 -7.3 -5.8 8.7 66 66 A L H < S+ 0 0 111 -4,-1.6 2,-0.3 -5,-0.2 -2,-0.2 0.910 81.2 88.7 -57.0 -44.8 -8.8 -2.4 8.1 67 67 A S < + 0 0 79 -4,-3.1 -31,-0.0 2,-0.1 -4,-0.0 -0.401 66.3 102.0 -60.3 114.8 -10.4 -3.5 4.9 68 68 A G S S- 0 0 48 -2,-0.3 -3,-0.0 2,-0.1 -2,-0.0 -0.963 84.6 -90.6 177.8 167.0 -13.8 -5.0 5.8 69 69 A P S S+ 0 0 133 0, 0.0 2,-0.2 0, 0.0 -2,-0.1 0.546 70.7 139.6 -69.8 -6.4 -17.6 -4.5 5.9 70 70 A S - 0 0 100 1,-0.2 -2,-0.1 -4,-0.1 0, 0.0 -0.170 33.1-172.4 -44.3 101.0 -17.1 -3.1 9.4 71 71 A S 0 0 127 -2,-0.2 -1,-0.2 0, 0.0 -3,-0.0 0.955 360.0 360.0 -65.1 -52.1 -19.7 -0.3 9.2 72 72 A G 0 0 109 -3,-0.0 0, 0.0 0, 0.0 0, 0.0 -0.008 360.0 360.0 -43.5 360.0 -18.7 1.3 12.5