==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 25-MAY-04 1WEP . COMPND 2 MOLECULE: PHF8; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR F.HE,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,Y.MUTO,S.YOKOYAMA, . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6265.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 32 40.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 7.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 127 0, 0.0 2,-0.3 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 107.8 5.6 31.8 11.2 2 2 A S - 0 0 104 2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.913 360.0-119.1-167.4 137.8 2.5 33.7 12.4 3 3 A S S S+ 0 0 140 -2,-0.3 -1,-0.1 3,-0.0 0, 0.0 0.893 103.2 46.4 -43.4 -50.1 -0.7 32.9 14.4 4 4 A G + 0 0 48 1,-0.1 -2,-0.3 -3,-0.1 0, 0.0 0.185 68.0 87.9 -77.8-158.4 -2.8 33.8 11.4 5 5 A S + 0 0 127 1,-0.1 -1,-0.1 -4,-0.1 -3,-0.1 0.906 62.4 174.5 68.5 42.9 -2.4 32.7 7.8 6 6 A S - 0 0 94 1,-0.1 -1,-0.1 2,-0.0 -2,-0.1 -0.207 36.0-134.5 -75.5 170.4 -4.4 29.5 8.3 7 7 A G - 0 0 69 2,-0.1 -1,-0.1 -2,-0.0 3,-0.1 0.782 18.2-152.4 -96.1 -33.2 -5.4 27.1 5.5 8 8 A M + 0 0 172 1,-0.2 2,-0.4 0, 0.0 -2,-0.0 0.907 49.5 131.5 60.1 43.5 -9.0 26.6 6.4 9 9 A A - 0 0 92 2,-0.0 2,-0.4 0, 0.0 -1,-0.2 -0.993 39.9-162.6-132.2 130.1 -9.0 23.1 4.8 10 10 A L + 0 0 167 -2,-0.4 0, 0.0 -3,-0.1 0, 0.0 -0.906 10.9 173.5-113.8 138.9 -10.3 19.9 6.3 11 11 A V - 0 0 80 -2,-0.4 10,-0.1 10,-0.0 -2,-0.0 -0.929 22.8-135.6-148.6 119.6 -9.4 16.4 5.1 12 12 A P - 0 0 86 0, 0.0 2,-0.3 0, 0.0 7,-0.0 -0.267 28.9-106.4 -69.8 157.5 -10.4 13.0 6.7 13 13 A V + 0 0 72 1,-0.1 8,-0.1 5,-0.1 5,-0.1 -0.655 37.6 167.4 -88.6 141.6 -7.9 10.2 7.2 14 14 A Y + 0 0 75 5,-1.9 -1,-0.1 -2,-0.3 4,-0.1 0.691 52.5 81.2-118.0 -43.6 -8.1 7.1 4.9 15 15 A C S > S- 0 0 5 4,-1.3 3,-0.7 1,-0.1 22,-0.1 0.012 89.0-109.7 -59.1 172.4 -4.8 5.2 5.5 16 16 A L T 3 S+ 0 0 78 1,-0.2 -1,-0.1 2,-0.1 21,-0.1 0.710 114.5 68.3 -78.8 -21.3 -4.3 3.0 8.5 17 17 A C T 3 S- 0 0 52 2,-0.1 -1,-0.2 1,-0.1 -2,-0.1 0.097 117.6-109.7 -85.1 23.9 -1.9 5.4 10.1 18 18 A R S < S+ 0 0 178 -3,-0.7 -2,-0.1 1,-0.2 -5,-0.1 0.909 73.8 142.2 48.0 49.3 -4.8 7.8 10.6 19 19 A Q - 0 0 84 1,-0.1 -5,-1.9 -4,-0.1 -4,-1.3 -0.945 52.2-147.1-124.1 143.4 -3.4 10.1 7.8 20 20 A P S S- 0 0 33 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.956 71.8 -44.4 -69.8 -53.1 -5.2 12.1 5.2 21 21 A Y - 0 0 117 -10,-0.1 2,-0.4 -7,-0.1 5,-0.1 -0.936 42.2-140.7-176.7 155.1 -2.6 11.9 2.4 22 22 A N - 0 0 51 -2,-0.3 -3,-0.0 1,-0.2 0, 0.0 -0.934 6.9-171.7-133.6 110.7 1.1 12.1 1.7 23 23 A V S S+ 0 0 110 -2,-0.4 -1,-0.2 1,-0.2 4,-0.1 0.988 86.6 58.3 -61.1 -63.2 2.5 13.7 -1.4 24 24 A N S S+ 0 0 159 2,-0.0 -1,-0.2 0, 0.0 2,-0.2 0.832 112.9 47.7 -34.4 -46.2 6.1 12.7 -1.0 25 25 A H S S- 0 0 106 1,-0.0 2,-0.3 21,-0.0 -3,-0.1 -0.543 93.6-109.5 -97.5 165.2 4.9 9.1 -1.0 26 26 A F - 0 0 43 -2,-0.2 13,-2.4 -5,-0.1 2,-0.4 -0.687 27.5-160.9 -95.9 148.4 2.5 7.4 -3.4 27 27 A M E -A 38 0A 5 -2,-0.3 11,-0.2 11,-0.2 2,-0.2 -0.986 3.0-150.7-131.7 140.2 -1.1 6.3 -2.4 28 28 A I E -A 37 0A 15 9,-1.8 9,-1.6 -2,-0.4 2,-0.5 -0.595 14.3-125.9-104.2 167.5 -3.4 3.8 -4.0 29 29 A E E -A 36 0A 89 7,-0.2 26,-0.5 -2,-0.2 2,-0.3 -0.960 19.8-130.0-119.5 120.7 -7.2 3.7 -4.2 30 30 A C B > -b 55 0B 0 5,-2.9 4,-1.2 -2,-0.5 26,-0.2 -0.488 7.1-151.3 -68.8 127.6 -9.1 0.6 -3.0 31 31 A G T 4 S+ 0 0 43 24,-2.5 -1,-0.1 -2,-0.3 25,-0.1 0.092 91.8 49.4 -87.0 24.7 -11.6 -0.5 -5.6 32 32 A L T 4 S+ 0 0 53 23,-0.2 -1,-0.2 3,-0.1 24,-0.1 0.636 128.4 11.7-125.3 -47.4 -13.8 -2.0 -2.9 33 33 A C T 4 S- 0 0 45 2,-0.1 -2,-0.1 0, 0.0 23,-0.1 0.435 95.0-122.8-113.2 -6.1 -14.3 0.6 -0.2 34 34 A Q < + 0 0 145 -4,-1.2 2,-0.3 1,-0.2 -3,-0.1 0.928 59.7 149.0 62.9 46.8 -12.8 3.5 -2.1 35 35 A D - 0 0 59 -5,-0.1 -5,-2.9 -21,-0.0 2,-0.3 -0.870 42.1-132.0-114.7 147.2 -10.2 4.3 0.5 36 36 A W E +A 29 0A 98 -2,-0.3 2,-0.3 -7,-0.2 -7,-0.2 -0.757 28.3 172.4 -98.8 143.0 -6.7 5.7 -0.0 37 37 A F E -A 28 0A 7 -9,-1.6 -9,-1.8 -2,-0.3 2,-0.5 -0.956 36.2 -97.9-144.9 161.9 -3.6 4.2 1.5 38 38 A H E >> -A 27 0A 8 -2,-0.3 4,-2.5 -11,-0.2 3,-0.5 -0.698 25.5-134.1 -85.6 127.7 0.2 4.6 1.4 39 39 A G H 3>>S+ 0 0 8 -13,-2.4 5,-2.1 -2,-0.5 4,-1.7 0.764 110.9 47.4 -49.0 -26.5 2.0 2.1 -0.8 40 40 A S H 345S+ 0 0 104 -14,-0.4 -1,-0.3 3,-0.2 5,-0.1 0.834 109.9 50.0 -84.4 -36.3 4.4 1.7 2.1 41 41 A C H <45S+ 0 0 61 -3,-0.5 -2,-0.2 1,-0.1 -1,-0.1 0.783 126.0 28.8 -72.3 -27.6 1.7 1.2 4.7 42 42 A V H <5S- 0 0 36 -4,-2.5 -2,-0.2 2,-0.1 -3,-0.2 0.783 111.6-113.3-100.2 -38.1 0.0 -1.4 2.6 43 43 A G T <5 + 0 0 52 -4,-1.7 2,-0.5 -5,-0.5 -3,-0.2 0.727 67.0 134.4 107.4 32.4 3.0 -2.8 0.7 44 44 A I < - 0 0 25 -5,-2.1 2,-0.3 -6,-0.2 -1,-0.3 -0.958 46.4-140.2-118.9 120.5 2.3 -1.7 -2.9 45 45 A E >> - 0 0 97 -2,-0.5 4,-2.4 1,-0.1 3,-1.3 -0.570 13.1-134.2 -78.8 136.9 5.0 -0.1 -5.1 46 46 A E H 3> S+ 0 0 126 1,-0.3 4,-1.4 -2,-0.3 -1,-0.1 0.875 108.3 58.3 -55.7 -39.6 3.9 2.8 -7.3 47 47 A E H 34 S+ 0 0 148 1,-0.2 -1,-0.3 2,-0.2 -2,-0.0 0.762 113.1 40.1 -62.5 -24.7 5.8 1.2 -10.2 48 48 A N H X> S+ 0 0 70 -3,-1.3 3,-2.3 2,-0.1 4,-1.0 0.756 101.0 71.5 -93.6 -30.5 3.6 -1.8 -9.7 49 49 A A H >< S+ 0 0 13 -4,-2.4 3,-1.5 1,-0.3 -2,-0.2 0.907 85.3 67.3 -51.3 -46.9 0.4 0.1 -9.0 50 50 A V T 3< S+ 0 0 79 -4,-1.4 -1,-0.3 1,-0.3 -2,-0.1 0.720 106.4 44.1 -48.0 -20.9 0.2 1.2 -12.7 51 51 A D T <4 S+ 0 0 59 -3,-2.3 19,-2.8 18,-0.1 2,-1.1 0.683 90.3 95.2 -96.9 -23.9 -0.4 -2.5 -13.3 52 52 A I << - 0 0 21 -3,-1.5 3,-0.4 -4,-1.0 17,-0.3 -0.580 51.3-176.2 -73.7 99.8 -2.9 -2.9 -10.4 53 53 A D S S+ 0 0 92 -2,-1.1 2,-0.4 1,-0.3 16,-0.2 0.920 80.5 16.8 -62.1 -45.5 -6.3 -2.5 -12.1 54 54 A I B S-C 68 0C 66 14,-1.0 14,-1.7 -3,-0.1 -1,-0.3 -0.824 79.8-151.7-134.9 95.6 -8.1 -2.8 -8.8 55 55 A Y B -b 30 0B 5 -26,-0.5 -24,-2.5 -3,-0.4 2,-0.6 -0.428 8.8-151.5 -67.4 134.7 -6.1 -2.3 -5.7 56 56 A H - 0 0 21 -26,-0.2 11,-0.1 -2,-0.1 -26,-0.1 -0.928 13.3-131.9-114.5 112.0 -7.5 -4.2 -2.6 57 57 A C >> - 0 0 0 -2,-0.6 4,-2.3 1,-0.1 3,-1.1 -0.090 27.5-107.4 -55.6 156.9 -6.8 -2.6 0.8 58 58 A P T 34 S+ 0 0 59 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.352 119.5 57.6 -69.8 8.8 -5.5 -4.9 3.5 59 59 A D T 34 S+ 0 0 119 2,-0.1 -2,-0.1 3,-0.0 -3,-0.0 0.640 111.6 35.4-109.9 -25.5 -8.9 -4.6 5.1 60 60 A C T X> S+ 0 0 19 -3,-1.1 4,-3.3 1,-0.1 3,-2.9 0.743 101.1 73.4 -98.4 -31.4 -11.0 -5.9 2.2 61 61 A E T 3< S+ 0 0 106 -4,-2.3 -1,-0.1 1,-0.3 -2,-0.1 0.744 86.1 69.6 -55.0 -22.9 -8.6 -8.6 0.9 62 62 A A T 34 S+ 0 0 86 -5,-0.2 -1,-0.3 1,-0.1 -2,-0.1 0.478 119.5 16.7 -74.9 -1.3 -9.6 -10.5 4.0 63 63 A V T <4 S+ 0 0 124 -3,-2.9 -2,-0.2 2,-0.2 -1,-0.1 0.544 137.0 33.3-134.9 -44.9 -12.9 -11.0 2.4 64 64 A F S < S- 0 0 141 -4,-3.3 -3,-0.2 1,-0.3 -2,-0.1 0.911 100.3-135.0 -84.2 -48.7 -12.6 -10.2 -1.3 65 65 A G - 0 0 14 -5,-0.4 -1,-0.3 3,-0.0 -2,-0.2 -0.921 44.3 -6.3 130.3-156.1 -9.1 -11.4 -1.9 66 66 A P S S- 0 0 96 0, 0.0 2,-0.3 0, 0.0 -9,-0.1 -0.077 80.3 -82.5 -69.7 174.3 -5.9 -10.2 -3.7 67 67 A S - 0 0 42 -11,-0.1 -12,-0.2 1,-0.1 -14,-0.1 -0.650 45.7-118.3 -84.4 134.6 -5.7 -7.0 -5.9 68 68 A I B -C 54 0C 83 -14,-1.7 -14,-1.0 -2,-0.3 2,-0.4 -0.246 24.6-140.9 -67.4 157.7 -6.8 -7.4 -9.5 69 69 A M - 0 0 119 -17,-0.3 -17,-0.2 -16,-0.2 -18,-0.1 -0.963 13.9-116.2-125.9 141.4 -4.4 -6.7 -12.3 70 70 A K - 0 0 82 -19,-2.8 -1,-0.1 -2,-0.4 -19,-0.1 0.144 23.8-118.9 -59.1-176.1 -4.9 -5.0 -15.7 71 71 A N + 0 0 128 2,-0.0 3,-0.1 -18,-0.0 -1,-0.1 0.841 32.6 176.5 -95.9 -44.7 -4.6 -6.8 -19.0 72 72 A W + 0 0 148 1,-0.2 2,-1.3 -21,-0.0 -2,-0.0 0.857 14.9 168.7 37.4 48.6 -1.8 -4.9 -20.6 73 73 A H + 0 0 141 1,-0.1 2,-0.5 4,-0.0 -1,-0.2 -0.666 11.2 145.7 -92.9 82.5 -2.0 -7.3 -23.5 74 74 A S - 0 0 111 -2,-1.3 -1,-0.1 1,-0.3 -2,-0.0 -0.735 64.7 -28.4-121.1 82.0 0.3 -5.6 -26.1 75 75 A G S S- 0 0 49 -2,-0.5 -1,-0.3 2,-0.0 2,-0.1 -0.050 91.4 -51.0 96.7 159.1 2.1 -8.2 -28.1 76 76 A P - 0 0 123 0, 0.0 -3,-0.0 0, 0.0 -2,-0.0 -0.430 69.2 -92.1 -69.8 138.4 3.3 -11.8 -27.4 77 77 A S - 0 0 116 -2,-0.1 -2,-0.0 1,-0.1 -4,-0.0 -0.146 29.1-153.6 -49.7 140.1 5.3 -12.3 -24.3 78 78 A S 0 0 126 1,-0.4 -1,-0.1 -3,-0.1 -3,-0.0 -0.238 360.0 360.0-112.2 42.4 9.1 -12.0 -24.9 79 79 A G 0 0 114 0, 0.0 -1,-0.4 0, 0.0 0, 0.0 -0.544 360.0 360.0 100.5 360.0 10.2 -14.3 -22.0