==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 25-MAY-04 1WEZ . COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN H'; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7291.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 47.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 17.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 8.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 119 0, 0.0 6,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-107.4 6.1 22.9 -16.9 2 2 A S + 0 0 105 2,-0.1 5,-0.1 1,-0.0 3,-0.1 0.942 360.0 155.9 49.4 92.4 3.7 20.1 -16.2 3 3 A S - 0 0 123 3,-0.4 2,-0.3 1,-0.2 4,-0.1 0.788 58.3 -46.2-108.4 -57.8 5.8 17.0 -16.4 4 4 A G S S+ 0 0 41 2,-0.3 2,-2.5 3,-0.0 -1,-0.2 -0.860 109.0 6.9-179.7 144.8 4.1 14.3 -14.3 5 5 A S S S+ 0 0 117 -2,-0.3 2,-0.2 -3,-0.1 -3,-0.0 -0.446 113.9 66.7 77.4 -68.8 2.4 13.8 -10.9 6 6 A S + 0 0 94 -2,-2.5 -3,-0.4 1,-0.0 -2,-0.3 -0.537 63.6 125.3 -84.9 151.3 2.6 17.5 -10.0 7 7 A G - 0 0 61 -2,-0.2 2,-0.4 -5,-0.1 3,-0.0 -0.818 53.3 -66.4-169.6-151.5 0.6 20.1 -11.9 8 8 A S S S+ 0 0 100 -2,-0.2 0, 0.0 3,-0.0 0, 0.0 -0.957 84.7 5.1-128.3 146.1 -1.9 23.0 -11.5 9 9 A S S S- 0 0 113 -2,-0.4 -2,-0.0 1,-0.1 -1,-0.0 0.262 87.5 -84.4 66.3 161.3 -5.5 23.0 -10.5 10 10 A F + 0 0 168 -3,-0.0 3,-0.1 2,-0.0 -1,-0.1 0.970 55.8 173.5 -63.1 -57.3 -7.4 19.9 -9.2 11 11 A Q - 0 0 150 1,-0.1 -3,-0.0 2,-0.1 -2,-0.0 0.924 47.7-104.0 42.4 88.6 -8.3 18.6 -12.7 12 12 A S - 0 0 48 1,-0.2 -1,-0.1 2,-0.1 -2,-0.0 -0.137 28.0-153.0 -42.1 116.8 -9.9 15.3 -11.8 13 13 A T S S- 0 0 96 -3,-0.1 -1,-0.2 2,-0.1 -2,-0.1 0.890 78.0 -39.6 -62.6 -41.4 -7.3 12.8 -12.7 14 14 A T S S- 0 0 51 50,-0.0 77,-0.1 0, 0.0 -2,-0.1 0.352 70.9-123.7-153.0 -43.5 -9.9 10.1 -13.3 15 15 A G S S+ 0 0 13 1,-0.2 2,-0.7 76,-0.1 48,-0.1 -0.397 82.0 96.4 119.1 -52.9 -12.6 10.4 -10.7 16 16 A H + 0 0 28 46,-0.3 46,-2.1 47,-0.2 2,-0.3 -0.632 52.5 145.9 -76.0 111.9 -12.6 6.9 -9.2 17 17 A C E -AB 61 89A 17 72,-4.4 72,-2.1 -2,-0.7 2,-0.4 -0.902 37.3-142.5-141.4 167.4 -10.3 7.0 -6.2 18 18 A V E -AB 60 88A 1 42,-3.0 42,-3.9 -2,-0.3 2,-0.3 -0.980 12.0-145.6-140.3 123.7 -10.2 5.4 -2.8 19 19 A H E -AB 59 87A 60 68,-1.8 68,-1.6 -2,-0.4 2,-0.4 -0.642 13.6-153.4 -88.8 144.9 -9.1 7.0 0.5 20 20 A M E +AB 58 86A 0 38,-3.5 38,-1.6 -2,-0.3 2,-0.3 -0.950 18.1 166.0-122.3 140.5 -7.2 5.1 3.1 21 21 A R E + B 0 85A 125 64,-1.4 64,-3.3 -2,-0.4 36,-0.2 -0.988 55.1 28.9-150.3 153.4 -7.0 5.7 6.8 22 22 A G S S+ 0 0 45 -2,-0.3 -1,-0.2 62,-0.3 35,-0.2 0.959 75.6 173.1 61.0 54.8 -5.9 3.8 10.0 23 23 A L - 0 0 19 33,-0.9 -1,-0.2 61,-0.1 60,-0.1 -0.596 33.8-101.1 -93.7 156.5 -3.2 1.8 8.2 24 24 A P > - 0 0 3 0, 0.0 3,-1.1 0, 0.0 32,-0.1 -0.374 22.0-124.2 -75.0 154.5 -0.7 -0.4 9.9 25 25 A Y T 3 S+ 0 0 176 1,-0.3 29,-0.2 -2,-0.1 2,-0.1 0.836 113.3 52.7 -65.5 -34.3 2.9 0.7 10.5 26 26 A R T 3 S+ 0 0 197 2,-0.0 2,-0.5 0, 0.0 -1,-0.3 -0.205 85.6 119.4 -95.2 40.7 4.2 -2.3 8.7 27 27 A A < + 0 0 13 -3,-1.1 2,-0.3 -2,-0.1 29,-0.1 -0.941 38.1 177.4-112.2 123.4 2.0 -1.5 5.7 28 28 A T >> - 0 0 69 -2,-0.5 4,-2.4 1,-0.1 3,-2.1 -0.865 44.8-104.3-123.4 157.5 3.7 -0.9 2.3 29 29 A E H 3> S+ 0 0 58 -2,-0.3 4,-2.3 1,-0.3 5,-0.3 0.895 120.7 61.8 -41.2 -54.5 2.3 -0.2 -1.1 30 30 A N H 3> S+ 0 0 119 1,-0.3 4,-1.3 2,-0.2 -1,-0.3 0.843 110.9 41.2 -41.5 -40.6 3.2 -3.7 -2.1 31 31 A D H <> S+ 0 0 50 -3,-2.1 4,-2.9 2,-0.2 3,-0.3 0.923 109.5 55.7 -74.5 -47.4 0.7 -4.7 0.6 32 32 A I H < S+ 0 0 1 -4,-2.4 -2,-0.2 1,-0.3 -1,-0.2 0.702 108.9 53.1 -57.7 -18.5 -1.8 -2.0 -0.4 33 33 A Y H < S+ 0 0 85 -4,-2.3 3,-0.5 -5,-0.3 4,-0.4 0.855 114.1 37.0 -84.1 -39.9 -1.6 -3.6 -3.8 34 34 A N H < S+ 0 0 125 -4,-1.3 -2,-0.2 -3,-0.3 -3,-0.1 0.634 107.7 68.2 -85.0 -16.6 -2.3 -7.2 -2.6 35 35 A F S < S+ 0 0 13 -4,-2.9 -1,-0.2 1,-0.2 -2,-0.2 0.592 110.9 33.6 -76.8 -11.7 -4.8 -5.8 -0.1 36 36 A F S S+ 0 0 3 -3,-0.5 -1,-0.2 -5,-0.2 -2,-0.2 0.427 104.5 157.5-118.9 -7.9 -7.0 -4.7 -3.0 37 37 A S + 0 0 43 -4,-0.4 3,-0.1 1,-0.2 -3,-0.1 -0.253 49.5 58.9 -67.9 158.1 -6.1 -7.6 -5.3 38 38 A P S S+ 0 0 127 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 0.144 108.3 83.2 -75.0 116.8 -7.1 -9.0 -7.5 39 39 A L - 0 0 32 -6,-0.3 -2,-0.1 2,-0.0 -3,-0.1 -0.960 68.9-125.7-166.0 173.6 -6.9 -5.5 -8.8 40 40 A N - 0 0 132 -2,-0.3 2,-0.5 -4,-0.1 23,-0.4 -0.812 21.2-156.9-138.6 93.9 -4.6 -2.9 -10.3 41 41 A P - 0 0 5 0, 0.0 21,-0.2 0, 0.0 3,-0.2 -0.597 18.8-135.4 -75.0 120.9 -4.5 0.4 -8.5 42 42 A M S S- 0 0 107 19,-2.2 2,-0.3 -2,-0.5 20,-0.2 0.831 83.2 -23.3 -40.2 -41.8 -3.3 3.2 -10.8 43 43 A R E -C 61 0A 128 18,-0.7 18,-1.6 2,-0.0 2,-0.6 -0.905 55.4-138.8-173.4 144.9 -1.2 4.3 -7.9 44 44 A V E -C 60 0A 4 -2,-0.3 2,-0.4 16,-0.2 16,-0.2 -0.938 19.7-154.4-116.8 109.6 -1.0 4.1 -4.2 45 45 A H E -C 59 0A 75 14,-2.4 14,-1.3 -2,-0.6 2,-0.6 -0.668 4.8-152.1 -84.7 133.9 0.1 7.3 -2.4 46 46 A I E -C 58 0A 50 -2,-0.4 2,-0.5 12,-0.2 12,-0.2 -0.931 8.1-145.0-111.4 113.8 1.7 6.9 1.0 47 47 A E E - 0 0 87 10,-1.4 8,-1.5 -2,-0.6 9,-0.5 -0.656 14.7-157.4 -80.3 124.3 1.3 9.8 3.4 48 48 A I E -C 54 0A 75 -2,-0.5 6,-0.3 6,-0.2 5,-0.1 -0.847 7.3-156.8-105.2 138.8 4.3 10.4 5.5 49 49 A G S S- 0 0 46 4,-4.0 -1,-0.2 -2,-0.4 5,-0.1 0.963 79.0 -7.2 -72.9 -87.2 4.1 12.2 8.9 50 50 A P S S- 0 0 74 0, 0.0 -2,-0.1 0, 0.0 4,-0.0 0.972 122.3 -54.6 -75.0 -82.5 7.5 13.6 9.7 51 51 A D S S+ 0 0 157 3,-0.1 3,-0.1 0, 0.0 -3,-0.0 -0.021 127.9 0.8-155.7 33.0 10.0 12.4 7.2 52 52 A G S S+ 0 0 49 1,-0.4 2,-0.3 2,-0.0 0, 0.0 0.007 98.9 99.5 175.7 -48.8 9.6 8.6 7.3 53 53 A R - 0 0 188 -5,-0.1 -4,-4.0 1,-0.1 -1,-0.4 -0.462 69.9-129.5 -65.8 125.3 6.9 7.7 9.8 54 54 A V E - C 0 48A 49 -6,-0.3 -6,-0.2 -2,-0.3 -1,-0.1 -0.129 5.0-146.0 -68.3 170.6 3.7 6.9 8.1 55 55 A T E - 0 0 65 -8,-1.5 -33,-0.2 2,-0.3 -7,-0.1 0.625 43.0-108.2-110.8 -25.4 0.4 8.5 9.2 56 56 A G E S+ 0 0 7 -9,-0.5 -33,-0.9 1,-0.4 2,-0.3 0.463 83.3 111.3 106.6 7.6 -1.9 5.6 8.4 57 57 A E E + 0 0 37 -10,-0.3 -10,-1.4 -36,-0.2 -1,-0.4 -0.805 36.7 167.6-113.5 155.1 -3.5 7.3 5.4 58 58 A A E -AC 20 46A 3 -38,-1.6 -38,-3.5 -2,-0.3 2,-0.4 -0.974 25.2-135.9-158.8 162.5 -3.3 6.4 1.7 59 59 A D E -AC 19 45A 56 -14,-1.3 -14,-2.4 -2,-0.3 2,-0.5 -0.988 14.4-164.2-131.8 122.7 -4.9 7.2 -1.6 60 60 A V E -AC 18 44A 0 -42,-3.9 -42,-3.0 -2,-0.4 2,-0.4 -0.913 6.5-161.8-109.4 130.6 -5.8 4.6 -4.2 61 61 A E E -AC 17 43A 26 -18,-1.6 -19,-2.2 -2,-0.5 -18,-0.7 -0.888 5.6-170.1-113.4 142.7 -6.5 5.6 -7.8 62 62 A F - 0 0 0 -46,-2.1 -46,-0.3 -2,-0.4 6,-0.0 -0.950 28.4-134.9-131.9 151.1 -8.3 3.5 -10.4 63 63 A A S S+ 0 0 56 -23,-0.4 -47,-0.2 -2,-0.3 2,-0.2 0.946 93.6 20.7 -66.1 -50.1 -8.9 3.8 -14.1 64 64 A T S S- 0 0 64 1,-0.1 4,-0.3 -49,-0.1 -2,-0.1 -0.496 81.3-113.2-110.9-178.8 -12.6 2.9 -13.8 65 65 A H S >> S+ 0 0 47 -2,-0.2 3,-2.0 2,-0.2 4,-1.7 0.890 110.2 62.6 -81.6 -44.4 -15.1 2.9 -11.0 66 66 A E H 3> S+ 0 0 137 1,-0.3 4,-3.8 2,-0.2 5,-0.3 0.910 97.0 58.1 -45.3 -53.1 -15.5 -0.9 -10.9 67 67 A D H 3> S+ 0 0 34 1,-0.2 4,-1.6 2,-0.2 -1,-0.3 0.797 108.3 51.0 -48.7 -30.2 -11.9 -1.2 -9.9 68 68 A A H X> S+ 0 0 0 -3,-2.0 4,-3.3 -4,-0.3 3,-0.7 0.993 110.9 41.6 -70.9 -67.6 -12.9 1.0 -7.0 69 69 A V H 3X S+ 0 0 76 -4,-1.7 4,-0.7 1,-0.3 -2,-0.2 0.864 115.3 54.9 -47.0 -41.0 -15.9 -0.8 -5.7 70 70 A A H >< S+ 0 0 45 -4,-3.8 3,-0.7 -5,-0.3 -1,-0.3 0.905 112.2 41.5 -59.9 -43.5 -13.9 -4.0 -6.3 71 71 A A H X< S+ 0 0 0 -4,-1.6 3,-2.0 -3,-0.7 -2,-0.2 0.814 106.0 64.5 -72.8 -31.8 -11.2 -2.5 -4.1 72 72 A M H >< S+ 0 0 16 -4,-3.3 3,-1.5 1,-0.3 -1,-0.2 0.645 81.0 81.7 -65.2 -14.7 -13.8 -1.2 -1.7 73 73 A A T << S+ 0 0 70 -3,-0.7 -1,-0.3 -4,-0.7 -2,-0.2 0.723 87.3 57.0 -62.4 -21.0 -14.6 -4.9 -1.1 74 74 A K T < S+ 0 0 75 -3,-2.0 2,-0.5 -4,-0.1 -1,-0.3 -0.179 78.3 142.3-102.4 37.5 -11.6 -4.8 1.3 75 75 A D S < S- 0 0 70 -3,-1.5 2,-0.6 1,-0.2 10,-0.1 -0.713 79.1 -6.3 -84.4 122.6 -13.2 -1.9 3.3 76 76 A K S S+ 0 0 140 8,-1.1 8,-0.3 -2,-0.5 -1,-0.2 -0.207 97.2 135.9 88.4 -42.8 -12.5 -2.3 7.0 77 77 A A - 0 0 42 -2,-0.6 7,-0.5 1,-0.1 2,-0.4 -0.086 67.6-108.8 -40.1 127.0 -10.9 -5.7 6.3 78 78 A N - 0 0 65 1,-0.2 5,-0.2 5,-0.2 -1,-0.1 -0.507 28.3-163.1 -67.1 119.2 -7.8 -5.8 8.4 79 79 A M S S- 0 0 28 3,-0.8 -1,-0.2 -2,-0.4 4,-0.1 0.939 78.2 -22.7 -68.2 -49.7 -4.8 -5.6 6.0 80 80 A Q S S- 0 0 94 2,-0.4 -2,-0.1 -3,-0.1 3,-0.0 0.578 125.7 -34.4-124.3 -75.3 -2.3 -6.9 8.5 81 81 A H S S+ 0 0 94 0, 0.0 2,-0.3 0, 0.0 -3,-0.1 0.132 118.7 69.4-141.8 14.6 -3.2 -6.5 12.2 82 82 A R S S- 0 0 101 -5,-0.1 -3,-0.8 -58,-0.0 2,-0.8 -0.881 79.1-113.4-133.7 164.6 -5.1 -3.2 12.0 83 83 A Y - 0 0 188 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.873 30.8-164.6-105.1 104.7 -8.4 -1.9 10.7 84 84 A V - 0 0 0 -2,-0.8 -8,-1.1 -7,-0.5 2,-0.5 -0.701 16.6-129.9 -89.7 138.3 -7.9 0.5 7.8 85 85 A E E -B 21 0A 91 -64,-3.3 -64,-1.4 -2,-0.3 2,-0.5 -0.765 20.0-163.7 -91.5 128.4 -10.8 2.7 6.8 86 86 A L E -B 20 0A 10 -2,-0.5 2,-0.6 -66,-0.2 -66,-0.2 -0.958 1.9-164.4-116.2 124.3 -11.6 2.8 3.1 87 87 A F E -B 19 0A 77 -68,-1.6 -68,-1.8 -2,-0.5 2,-0.5 -0.927 19.7-133.2-112.5 112.0 -13.8 5.5 1.7 88 88 A L E +B 18 0A 72 -2,-0.6 2,-0.5 -70,-0.2 -70,-0.2 -0.479 31.2 176.7 -64.5 115.1 -15.2 4.9 -1.8 89 89 A N E +B 17 0A 88 -72,-2.1 -72,-4.4 -2,-0.5 2,-0.3 -0.933 15.5 137.2-128.4 106.7 -14.7 8.1 -3.7 90 90 A S - 0 0 39 -2,-0.5 -74,-0.2 -74,-0.3 -75,-0.1 -0.905 45.2-147.0-142.2 168.1 -15.7 8.2 -7.4 91 91 A T - 0 0 108 -2,-0.3 -1,-0.1 -77,-0.1 -76,-0.1 0.754 33.5-159.4-104.9 -39.1 -17.4 10.5 -9.9 92 92 A A - 0 0 49 2,-0.0 3,-0.1 0, 0.0 -28,-0.0 0.581 10.2-125.6 62.4 137.4 -19.1 7.9 -12.1 93 93 A G - 0 0 81 1,-0.2 2,-0.3 0, 0.0 0, 0.0 0.469 46.5 -54.0 -84.6-133.6 -20.2 8.8 -15.6 94 94 A T + 0 0 140 2,-0.0 2,-0.3 0, 0.0 -1,-0.2 -0.846 55.4 159.9-115.5 151.8 -23.6 8.4 -17.0 95 95 A S + 0 0 122 -2,-0.3 0, 0.0 -3,-0.1 0, 0.0 -0.971 20.6 95.9-160.8 166.3 -25.9 5.4 -17.2 96 96 A G - 0 0 69 -2,-0.3 2,-0.4 1,-0.0 -1,-0.1 0.454 38.9-156.1 109.3 112.5 -29.5 4.3 -17.7 97 97 A S + 0 0 131 4,-0.0 -1,-0.0 3,-0.0 3,-0.0 -0.967 18.4 166.1-121.8 134.2 -31.2 3.3 -20.9 98 98 A G - 0 0 58 -2,-0.4 3,-0.3 1,-0.1 2,-0.2 -0.628 43.8 -57.3-130.4-171.7 -34.9 3.4 -21.6 99 99 A P S S- 0 0 120 0, 0.0 3,-0.3 0, 0.0 -1,-0.1 -0.505 111.8 -4.0 -75.0 139.3 -37.3 3.2 -24.5 100 100 A S S S- 0 0 113 -2,-0.2 2,-0.1 1,-0.2 -3,-0.0 0.919 93.6-109.3 40.6 86.1 -36.9 5.7 -27.3 101 101 A S 0 0 126 -3,-0.3 -1,-0.2 1,-0.2 -4,-0.0 -0.205 360.0 360.0 -45.7 105.4 -34.0 7.8 -25.9 102 102 A G 0 0 127 -3,-0.3 -1,-0.2 -2,-0.1 -2,-0.1 0.342 360.0 360.0 -57.8 360.0 -35.9 11.0 -25.2