==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 27-MAY-04 1WG5 . COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN H; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, . 104 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7529.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 54.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 18.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 11.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 11.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 124 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-172.0 -17.0 -0.6 17.5 2 2 A S - 0 0 134 1,-0.1 2,-0.3 0, 0.0 0, 0.0 0.735 360.0-178.9 66.2 121.6 -17.4 3.1 16.4 3 3 A S + 0 0 133 2,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.886 24.4 93.9-156.8 120.3 -16.4 4.1 12.9 4 4 A G - 0 0 75 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.903 30.1-171.1 169.1 163.5 -16.4 7.4 11.2 5 5 A S - 0 0 107 -2,-0.3 -1,-0.1 0, 0.0 -2,-0.0 0.509 23.0-158.6-137.2 -54.1 -14.5 10.6 10.4 6 6 A S + 0 0 125 3,-0.0 -2,-0.0 0, 0.0 0, 0.0 0.831 66.4 52.9 64.4 111.8 -16.8 13.2 8.8 7 7 A G + 0 0 82 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.880 56.9 129.2 98.1 69.2 -15.1 15.9 6.8 8 8 A N - 0 0 104 3,-0.0 0, 0.0 5,-0.0 0, 0.0 0.697 40.5-164.3-116.9 -42.6 -12.9 14.3 4.1 9 9 A S - 0 0 96 1,-0.0 2,-0.2 2,-0.0 3,-0.1 0.519 37.3 -71.0 61.5 143.9 -13.8 16.0 0.9 10 10 A P S S- 0 0 117 0, 0.0 -1,-0.0 0, 0.0 0, 0.0 -0.479 108.9 -1.8 -69.7 130.0 -12.9 14.6 -2.5 11 11 A D S S+ 0 0 149 -2,-0.2 2,-0.2 1,-0.2 3,-0.1 0.933 91.4 128.6 52.8 96.6 -9.2 14.8 -3.4 12 12 A T - 0 0 73 1,-0.6 -1,-0.2 2,-0.2 3,-0.0 -0.690 59.2 -21.8-179.8 122.6 -7.5 16.6 -0.5 13 13 A A S S+ 0 0 81 -2,-0.2 -1,-0.6 2,-0.0 54,-0.2 0.169 82.8 93.4 58.9 174.4 -4.5 15.9 1.7 14 14 A N - 0 0 80 1,-0.1 53,-0.7 -3,-0.1 -2,-0.2 0.895 52.5-152.7 69.0 101.4 -3.0 12.4 2.2 15 15 A D - 0 0 107 51,-0.2 -1,-0.1 52,-0.1 77,-0.1 0.688 51.9 -99.0 -75.9 -18.8 -0.2 11.6 -0.2 16 16 A G + 0 0 0 75,-0.3 48,-2.9 1,-0.2 2,-0.2 0.774 63.5 164.8 103.6 36.7 -1.1 7.9 0.0 17 17 A F E -AB 63 91A 7 74,-0.6 74,-2.2 46,-0.2 2,-0.3 -0.556 11.8-173.5 -86.3 150.4 1.5 6.6 2.5 18 18 A V E -AB 62 90A 0 44,-2.1 44,-1.7 72,-0.3 2,-0.4 -0.983 16.9-138.3-143.5 153.5 1.2 3.3 4.3 19 19 A R E -AB 61 89A 65 70,-2.0 70,-2.5 -2,-0.3 2,-0.3 -0.950 14.7-155.2-117.6 130.8 3.0 1.3 7.0 20 20 A L E -AB 60 88A 1 40,-2.9 40,-1.2 -2,-0.4 2,-0.4 -0.803 7.5-170.2-105.1 145.4 3.7 -2.4 6.8 21 21 A R E +AB 59 87A 78 66,-1.4 66,-3.1 -2,-0.3 38,-0.2 -0.983 64.8 26.9-138.7 125.0 4.3 -4.7 9.8 22 22 A G S S- 0 0 26 36,-2.4 -1,-0.2 -2,-0.4 37,-0.1 0.817 72.6-178.0 96.7 38.5 5.5 -8.3 9.8 23 23 A L - 0 0 11 35,-0.8 -1,-0.1 -3,-0.2 3,-0.1 -0.368 27.7-107.7 -70.2 147.9 7.6 -8.3 6.6 24 24 A P > - 0 0 4 0, 0.0 3,-1.8 0, 0.0 2,-0.1 -0.151 50.1 -69.5 -69.7 168.0 9.3 -11.5 5.6 25 25 A F T 3 S+ 0 0 195 1,-0.3 3,-0.1 33,-0.0 59,-0.0 -0.392 122.8 7.6 -62.3 128.1 13.0 -12.2 5.8 26 26 A G T 3 S+ 0 0 59 1,-0.2 2,-0.3 -2,-0.1 -1,-0.3 0.754 87.9 178.4 71.5 23.8 15.0 -10.1 3.3 27 27 A C < + 0 0 4 -3,-1.8 2,-0.3 4,-0.1 -1,-0.2 -0.445 10.1 158.9 -63.9 121.1 11.8 -8.2 2.4 28 28 A S >> - 0 0 60 -2,-0.3 4,-2.1 -3,-0.1 3,-2.1 -0.863 57.5 -87.7-138.4 171.8 12.6 -5.5 -0.1 29 29 A K H 3>>S+ 0 0 107 1,-0.3 4,-2.1 -2,-0.3 5,-0.5 0.906 120.2 67.5 -45.6 -50.9 11.0 -3.4 -2.8 30 30 A E H 3>5S+ 0 0 173 1,-0.3 4,-0.5 2,-0.2 -1,-0.3 0.819 111.3 35.5 -39.9 -37.7 11.5 -6.1 -5.4 31 31 A E H <>5S+ 0 0 82 -3,-2.1 4,-2.0 2,-0.1 -1,-0.3 0.824 120.7 48.3 -86.9 -36.2 9.0 -8.1 -3.3 32 32 A I H X5S+ 0 0 1 -4,-2.1 4,-1.7 2,-0.2 3,-0.2 0.993 103.2 57.0 -67.2 -64.5 6.8 -5.1 -2.4 33 33 A V H <5S+ 0 0 79 -4,-2.1 3,-0.3 1,-0.3 -1,-0.2 0.828 116.6 39.5 -34.1 -46.0 6.4 -3.4 -5.8 34 34 A Q H ><< S+ 0 0 0 -4,-1.7 3,-2.4 -3,-0.3 -1,-0.3 -0.091 84.6 168.8-108.5 32.6 1.0 -4.3 -4.7 37 37 A S T < + 0 0 86 -3,-2.4 3,-0.1 1,-0.3 -3,-0.1 -0.048 65.4 25.2 -45.2 145.5 0.4 -5.5 -8.2 38 38 A G T 3 S+ 0 0 73 1,-0.3 -1,-0.3 0, 0.0 2,-0.2 0.062 105.0 100.7 85.0 -27.3 -2.2 -3.4 -10.1 39 39 A L < - 0 0 27 -3,-2.4 2,-0.5 -6,-0.2 -1,-0.3 -0.596 69.6-131.3 -91.9 153.8 -1.4 -0.4 -7.9 40 40 A E - 0 0 129 -2,-0.2 25,-2.0 -3,-0.1 2,-0.3 -0.919 24.7-175.5-109.7 123.1 0.8 2.5 -9.0 41 41 A I E -C 64 0A 36 -2,-0.5 23,-0.2 23,-0.2 5,-0.1 -0.873 26.9-108.8-117.7 150.2 3.6 3.6 -6.7 42 42 A V E > - 0 0 46 21,-1.6 3,-1.4 -2,-0.3 2,-0.2 -0.375 43.1 -93.6 -74.3 153.0 6.0 6.6 -7.0 43 43 A P E 3 S+ 0 0 121 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.480 107.2 1.3 -69.8 129.8 9.7 6.0 -7.7 44 44 A N E 3 S+ 0 0 164 -2,-0.2 -2,-0.1 1,-0.1 0, 0.0 0.787 92.8 130.7 63.8 27.4 11.9 5.8 -4.6 45 45 A G E < + 0 0 5 -3,-1.4 18,-1.9 18,-0.1 2,-0.4 -0.075 44.3 92.1-101.8 33.6 8.8 6.3 -2.5 46 46 A M E -C 62 0A 23 16,-0.2 2,-0.4 -5,-0.1 16,-0.2 -0.975 53.6-162.7-130.0 142.7 9.5 3.4 -0.2 47 47 A T E -C 61 0A 53 14,-2.5 14,-2.5 -2,-0.4 -2,-0.0 -0.987 7.4-179.4-128.4 130.8 11.4 3.2 3.2 48 48 A L - 0 0 44 -2,-0.4 12,-0.2 12,-0.2 10,-0.0 -0.821 13.3-166.7-132.4 94.0 12.8 0.1 4.9 49 49 A P - 0 0 18 0, 0.0 8,-0.9 0, 0.0 2,-0.3 -0.070 5.5-160.5 -69.8 174.7 14.4 0.7 8.3 50 50 A V B -D 56 0B 73 6,-0.2 6,-0.2 1,-0.1 5,-0.0 -0.881 20.2 -88.9-148.2 178.5 16.6 -1.8 10.1 51 51 A D - 0 0 102 4,-1.3 -1,-0.1 -2,-0.3 6,-0.1 0.018 57.2 -81.0 -80.1-168.3 18.1 -2.6 13.6 52 52 A F S S+ 0 0 194 1,-0.2 -1,-0.1 2,-0.1 -2,-0.0 0.731 135.9 39.4 -68.9 -22.0 21.3 -1.4 15.1 53 53 A Q S S- 0 0 141 2,-0.1 -1,-0.2 0, 0.0 0, 0.0 0.612 128.5 -94.5-100.3 -18.1 23.1 -4.1 13.1 54 54 A G S S+ 0 0 43 1,-0.3 2,-0.6 2,-0.0 -2,-0.1 0.571 72.2 149.4 112.7 16.4 21.1 -3.6 10.0 55 55 A R - 0 0 175 1,-0.1 -4,-1.3 2,-0.0 -1,-0.3 -0.731 56.5-103.3 -86.9 120.9 18.5 -6.4 10.5 56 56 A S B -D 50 0B 47 -2,-0.6 -6,-0.2 -6,-0.2 -1,-0.1 -0.020 21.4-145.7 -40.1 137.9 15.1 -5.5 9.0 57 57 A T - 0 0 42 -8,-0.9 -35,-0.2 2,-0.3 -1,-0.2 0.083 39.8-110.9 -97.4 22.4 12.6 -4.4 11.6 58 58 A G S S+ 0 0 14 1,-0.2 -36,-2.4 -9,-0.2 -35,-0.8 0.735 87.6 109.9 55.8 21.9 9.7 -6.0 9.8 59 59 A E E +A 21 0A 45 -10,-0.2 -2,-0.3 -38,-0.2 2,-0.3 -0.947 38.8 163.7-129.6 149.9 8.5 -2.5 9.1 60 60 A A E -A 20 0A 0 -40,-1.2 -40,-2.9 -2,-0.3 2,-0.4 -0.988 25.2-139.5-159.6 158.3 8.3 -0.4 5.9 61 61 A F E -AC 19 47A 7 -14,-2.5 -14,-2.5 -2,-0.3 2,-0.3 -0.972 17.6-170.7-130.1 118.8 6.7 2.7 4.5 62 62 A V E -AC 18 46A 0 -44,-1.7 -44,-2.1 -2,-0.4 2,-0.6 -0.838 11.9-148.6-109.5 145.6 5.3 2.9 0.9 63 63 A Q E -A 17 0A 24 -18,-1.9 -21,-1.6 -2,-0.3 -46,-0.2 -0.922 13.8-154.5-117.2 108.2 4.1 6.1 -0.9 64 64 A F E - C 0 41A 1 -48,-2.9 -23,-0.2 -2,-0.6 6,-0.1 -0.409 32.6-107.3 -77.8 155.0 1.3 5.6 -3.4 65 65 A A S S- 0 0 32 -25,-2.0 2,-0.3 1,-0.1 -24,-0.1 0.804 97.6 -18.2 -49.8 -31.0 0.8 7.9 -6.4 66 66 A S S >> S- 0 0 38 -26,-0.3 4,-1.5 -50,-0.2 3,-1.1 -0.980 72.8 -92.0-168.6 166.3 -2.3 9.2 -4.5 67 67 A Q H >> S+ 0 0 58 -53,-0.7 4,-2.4 -2,-0.3 3,-0.6 0.919 118.6 64.7 -53.1 -48.2 -4.7 8.3 -1.7 68 68 A E H 3> S+ 0 0 133 1,-0.3 4,-0.9 2,-0.2 -1,-0.3 0.836 109.1 40.8 -44.4 -37.8 -7.1 6.7 -4.2 69 69 A I H <> S+ 0 0 9 -3,-1.1 4,-1.0 2,-0.2 -1,-0.3 0.766 108.4 61.9 -83.0 -27.8 -4.4 4.2 -4.8 70 70 A A H XX S+ 0 0 0 -4,-1.5 4,-1.8 -3,-0.6 3,-0.7 0.932 101.6 50.8 -63.3 -47.7 -3.5 4.0 -1.0 71 71 A E H 3X S+ 0 0 109 -4,-2.4 4,-1.5 1,-0.3 3,-0.3 0.925 103.9 57.9 -56.3 -47.9 -7.0 2.7 -0.1 72 72 A K H 3< S+ 0 0 113 -4,-0.9 -1,-0.3 -5,-0.3 -2,-0.2 0.819 110.2 45.6 -52.8 -32.1 -6.8 -0.0 -2.7 73 73 A A H X< S+ 0 0 0 -4,-1.0 3,-1.9 -3,-0.7 -1,-0.3 0.800 100.3 67.7 -81.5 -31.4 -3.7 -1.2 -1.0 74 74 A L H >< S+ 0 0 44 -4,-1.8 3,-0.9 -3,-0.3 14,-0.2 0.892 91.3 61.6 -55.1 -42.5 -5.2 -1.0 2.5 75 75 A K T 3< S+ 0 0 187 -4,-1.5 -1,-0.3 1,-0.3 -2,-0.2 0.694 88.3 75.5 -58.4 -17.8 -7.6 -3.8 1.7 76 76 A K T X S+ 0 0 44 -3,-1.9 3,-1.0 -4,-0.1 -1,-0.3 -0.014 71.5 141.1 -85.2 31.4 -4.4 -5.9 1.3 77 77 A H T < + 0 0 77 -3,-0.9 10,-0.2 1,-0.2 3,-0.1 -0.417 65.3 16.2 -75.0 150.2 -4.1 -6.0 5.1 78 78 A K T 3 S+ 0 0 98 8,-1.6 2,-0.6 1,-0.2 -1,-0.2 0.567 88.5 154.3 64.8 6.7 -2.9 -9.2 6.8 79 79 A E < - 0 0 94 -3,-1.0 -1,-0.2 7,-0.7 2,-0.2 -0.565 35.3-145.5 -71.7 112.6 -1.7 -10.2 3.3 80 80 A R - 0 0 138 -2,-0.6 2,-0.6 5,-0.3 5,-0.3 -0.535 2.5-147.9 -80.5 145.0 1.2 -12.6 3.7 81 81 A I S S- 0 0 20 3,-1.5 2,-0.1 -2,-0.2 -1,-0.0 -0.794 76.6 -33.3-116.8 88.5 4.0 -12.7 1.3 82 82 A G S S- 0 0 45 -2,-0.6 3,-0.1 1,-0.1 -2,-0.1 -0.194 136.4 -21.9 97.1 -42.3 5.4 -16.2 0.9 83 83 A H S S+ 0 0 142 1,-0.2 2,-0.2 -2,-0.1 -1,-0.1 0.231 116.5 86.5 168.7 38.4 4.7 -17.2 4.5 84 84 A R S S- 0 0 142 -60,-0.1 -3,-1.5 -6,-0.0 -1,-0.2 -0.760 70.2-127.1-157.1 104.1 4.4 -14.1 6.7 85 85 A Y - 0 0 148 -5,-0.3 2,-0.5 -2,-0.2 -5,-0.3 -0.186 24.7-143.1 -51.3 137.3 1.2 -12.1 7.2 86 86 A I - 0 0 0 -7,-0.2 -8,-1.6 -10,-0.1 -7,-0.7 -0.928 4.3-150.7-111.9 125.3 1.7 -8.4 6.4 87 87 A E E -B 21 0A 53 -66,-3.1 -66,-1.4 -2,-0.5 2,-0.4 -0.838 12.8-164.4 -97.6 116.1 -0.1 -5.7 8.5 88 88 A I E +B 20 0A 3 -2,-0.7 2,-0.4 -68,-0.2 -68,-0.2 -0.853 9.2 178.2-103.3 132.5 -0.8 -2.5 6.6 89 89 A F E -B 19 0A 90 -70,-2.5 -70,-2.0 -2,-0.4 -2,-0.0 -0.964 37.1-107.0-137.7 119.0 -1.8 0.7 8.4 90 90 A K E +B 18 0A 72 -2,-0.4 -72,-0.3 -72,-0.2 2,-0.2 -0.099 51.8 168.9 -42.2 128.4 -2.5 4.0 6.7 91 91 A S E -B 17 0A 10 -74,-2.2 -74,-0.6 -29,-0.2 2,-0.3 -0.696 25.9-124.7-134.1-174.1 0.4 6.4 7.3 92 92 A S >> - 0 0 54 -2,-0.2 4,-1.6 -76,-0.1 3,-0.6 -0.977 24.2-117.4-139.7 152.0 1.8 9.7 6.3 93 93 A R T 34 S+ 0 0 164 -2,-0.3 -1,-0.1 1,-0.2 -30,-0.0 0.886 114.7 59.9 -52.8 -42.2 5.1 11.0 4.9 94 94 A A T 34 S+ 0 0 47 1,-0.2 -1,-0.2 -3,-0.1 10,-0.1 0.903 102.5 52.5 -53.6 -45.0 5.6 13.2 8.0 95 95 A E T <4 S+ 0 0 98 -3,-0.6 -1,-0.2 8,-0.1 2,-0.2 0.952 84.1 94.7 -57.1 -53.4 5.5 10.1 10.2 96 96 A V S < S- 0 0 12 -4,-1.6 6,-0.0 1,-0.1 -1,-0.0 -0.186 83.0-130.3 -45.3 102.0 8.2 8.3 8.2 97 97 A R + 0 0 146 -2,-0.2 6,-0.1 1,-0.1 -1,-0.1 -0.198 37.8 165.8 -57.6 148.4 11.3 9.3 10.2 98 98 A T - 0 0 94 4,-0.3 -1,-0.1 2,-0.1 4,-0.1 -0.002 62.8 -86.4-157.6 35.7 14.2 10.7 8.3 99 99 A S S S+ 0 0 132 1,-0.2 3,-0.0 3,-0.1 -2,-0.0 0.977 97.9 65.3 51.9 79.8 16.5 12.3 10.9 100 100 A G S S- 0 0 52 2,-0.2 -1,-0.2 1,-0.1 -2,-0.1 -0.982 103.2 -50.2 171.7-162.9 15.0 15.8 11.2 101 101 A P S S+ 0 0 118 0, 0.0 2,-0.7 0, 0.0 -1,-0.1 0.822 88.8 113.7 -69.8 -32.6 12.0 17.9 12.2 102 102 A S + 0 0 59 -4,-0.1 -4,-0.3 -3,-0.0 2,-0.3 -0.170 52.3 107.8 -45.3 91.8 9.6 15.7 10.3 103 103 A S 0 0 88 -2,-0.7 -8,-0.1 1,-0.3 -7,-0.1 -0.916 360.0 360.0-171.4 143.5 7.7 14.3 13.3 104 104 A G 0 0 122 -2,-0.3 -1,-0.3 -9,-0.1 -10,-0.0 0.437 360.0 360.0 79.1 360.0 4.4 14.6 15.0