==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SUGAR BINDING PROTEIN 28-MAY-04 1WGQ . COMPND 2 MOLECULE: FYVE, RHOGEF AND PH DOMAIN CONTAINING 6; ETHANOL . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR H.LI,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL . 109 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7244.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 56.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 36 33.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 5.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 11.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 130 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 80.4 -4.2 -14.5 9.4 2 2 A S + 0 0 115 1,-0.3 0, 0.0 2,-0.1 0, 0.0 -0.973 360.0 39.0-167.4 164.8 -4.1 -11.9 12.2 3 3 A S S S- 0 0 97 -2,-0.3 -1,-0.3 2,-0.0 0, 0.0 0.494 72.3-107.2 61.4 145.9 -6.0 -8.9 13.5 4 4 A G - 0 0 78 2,-0.1 2,-0.2 1,-0.0 -2,-0.1 0.508 37.5 -95.6 -76.2-136.6 -9.8 -8.7 13.6 5 5 A S + 0 0 117 1,-0.0 2,-0.1 0, 0.0 4,-0.1 -0.728 61.4 127.7-157.2 100.1 -11.9 -6.6 11.3 6 6 A S + 0 0 135 -2,-0.2 2,-0.3 2,-0.1 -2,-0.1 -0.597 65.1 3.3-158.4 87.7 -13.2 -3.2 12.4 7 7 A G S S- 0 0 77 -2,-0.1 2,-0.1 3,-0.0 0, 0.0 -0.842 98.0 -26.6 132.8-169.0 -12.5 -0.2 10.0 8 8 A S - 0 0 79 -2,-0.3 3,-0.2 1,-0.1 -2,-0.1 -0.393 66.2-100.8 -78.3 157.7 -11.0 0.5 6.7 9 9 A T S S- 0 0 102 22,-0.6 2,-0.3 1,-0.2 23,-0.1 0.902 99.7 -16.4 -39.9 -59.5 -8.3 -1.7 5.2 10 10 A M + 0 0 23 21,-0.3 21,-1.4 87,-0.1 2,-0.3 -0.972 65.9 163.6-155.5 137.8 -5.6 0.7 6.2 11 11 A S E +A 30 0A 53 -2,-0.3 2,-0.3 19,-0.2 19,-0.2 -0.882 22.1 115.6-159.5 122.7 -5.5 4.4 7.3 12 12 A G E -A 29 0A 13 17,-1.0 17,-0.5 -2,-0.3 15,-0.1 -0.872 63.0 -78.9 177.8 149.9 -2.8 6.4 9.0 13 13 A Y E +A 28 0A 89 -2,-0.3 2,-0.2 15,-0.2 15,-0.2 -0.330 54.0 170.7 -60.7 135.7 -0.5 9.3 8.5 14 14 A L E -A 27 0A 2 13,-2.3 13,-1.8 11,-0.1 2,-0.5 -0.798 33.8-107.7-137.7 178.2 2.6 8.4 6.5 15 15 A Y E -AB 26 84A 103 69,-0.7 69,-0.8 -2,-0.2 2,-0.3 -0.957 27.0-156.9-119.5 116.0 5.5 10.1 4.8 16 16 A R E +AB 25 83A 51 9,-2.2 9,-0.7 -2,-0.5 2,-0.3 -0.679 19.3 166.4 -91.5 143.7 5.7 10.5 1.0 17 17 A S E - B 0 82A 0 65,-0.9 65,-4.2 -2,-0.3 7,-0.1 -0.981 43.3-134.1-152.8 157.7 8.9 10.9 -0.8 18 18 A K S S- 0 0 104 -2,-0.3 2,-0.3 1,-0.3 6,-0.1 0.096 82.1 -60.0 -99.6 19.7 10.3 10.7 -4.3 19 19 A G S > S- 0 0 14 4,-0.1 3,-0.9 3,-0.1 -1,-0.3 -0.834 84.1 -28.6 133.7-170.9 13.3 8.7 -3.1 20 20 A S T 3 S+ 0 0 55 -2,-0.3 -2,-0.0 1,-0.2 -3,-0.0 -0.482 122.2 27.3 -79.9 150.6 16.2 9.1 -0.6 21 21 A K T 3 S+ 0 0 202 1,-0.3 -1,-0.2 -2,-0.2 -4,-0.0 0.436 100.0 119.8 78.3 -0.5 17.6 12.4 0.2 22 22 A K S < S- 0 0 112 -3,-0.9 -1,-0.3 1,-0.1 2,-0.2 -0.630 73.8 -97.8 -96.4 156.0 14.2 13.8 -0.6 23 23 A P - 0 0 85 0, 0.0 -5,-0.2 0, 0.0 -4,-0.1 -0.525 37.7-125.9 -75.0 136.4 11.9 15.7 1.7 24 24 A W - 0 0 80 -2,-0.2 2,-0.4 -7,-0.1 -7,-0.2 -0.349 16.2-145.2 -77.0 161.6 9.2 13.7 3.4 25 25 A K E -A 16 0A 107 -9,-0.7 -9,-2.2 -2,-0.1 2,-0.8 -0.957 5.2-143.3-135.8 114.3 5.6 14.8 3.2 26 26 A H E +A 15 0A 111 -2,-0.4 2,-0.3 -11,-0.2 -11,-0.2 -0.676 43.3 143.8 -79.8 108.9 3.2 14.2 6.1 27 27 A L E -A 14 0A 27 -13,-1.8 -13,-2.3 -2,-0.8 2,-0.4 -0.915 47.9-110.8-141.4 165.7 -0.1 13.3 4.6 28 28 A W E -AC 13 39A 35 11,-0.7 11,-2.2 -2,-0.3 2,-0.3 -0.813 33.1-172.9-102.2 141.2 -3.1 11.1 5.3 29 29 A F E -AC 12 38A 0 -17,-0.5 -17,-1.0 -2,-0.4 2,-0.3 -0.930 6.8-175.8-133.1 156.4 -3.8 8.0 3.2 30 30 A V E -AC 11 37A 18 7,-1.3 7,-2.0 -2,-0.3 2,-0.6 -0.987 21.8-133.0-150.2 153.0 -6.6 5.5 3.0 31 31 A I E + C 0 36A 10 -21,-1.4 -22,-0.6 -2,-0.3 2,-0.4 -0.936 37.7 154.4-114.2 110.9 -7.3 2.3 1.0 32 32 A K E > - C 0 35A 110 3,-2.2 3,-2.7 -2,-0.6 -2,-0.1 -0.997 68.3 -2.3-138.2 140.6 -10.8 2.1 -0.5 33 33 A N T 3 S- 0 0 137 -2,-0.4 3,-0.1 1,-0.3 -1,-0.1 0.763 128.2 -64.1 51.9 25.4 -12.1 0.2 -3.5 34 34 A K T 3 S+ 0 0 85 1,-0.3 19,-2.2 18,-0.1 2,-0.4 0.807 111.7 128.1 68.4 30.3 -8.5 -0.9 -3.9 35 35 A V E < -CD 32 52A 18 -3,-2.7 -3,-2.2 17,-0.2 2,-1.1 -0.962 61.0-133.5-122.4 137.5 -7.6 2.8 -4.5 36 36 A L E -CD 31 51A 8 15,-3.2 15,-1.4 -2,-0.4 2,-0.2 -0.771 29.9-166.6 -92.1 97.9 -5.0 4.8 -2.7 37 37 A Y E -CD 30 50A 44 -7,-2.0 -7,-1.3 -2,-1.1 2,-0.3 -0.545 10.9-134.3 -85.3 150.5 -6.6 8.1 -1.8 38 38 A T E +CD 29 49A 11 11,-3.9 10,-1.5 -2,-0.2 11,-0.7 -0.818 30.2 161.0-106.9 145.6 -4.7 11.1 -0.7 39 39 A Y E -C 28 0A 37 -11,-2.2 -11,-0.7 -2,-0.3 3,-0.1 -0.779 34.0-149.5-145.1-172.5 -5.6 13.4 2.2 40 40 A A S S+ 0 0 51 1,-0.5 2,-0.3 -13,-0.2 -1,-0.1 0.548 81.6 24.3-132.3 -46.0 -4.3 15.9 4.7 41 41 A A > - 0 0 45 1,-0.1 3,-1.4 -13,-0.1 -1,-0.5 -0.953 69.9-125.2-129.4 148.3 -6.2 15.6 7.9 42 42 A S T 3 S+ 0 0 62 -2,-0.3 2,-0.3 1,-0.3 -1,-0.1 0.876 116.2 49.4 -55.8 -40.3 -8.1 12.6 9.4 43 43 A E T 3 S+ 0 0 181 -3,-0.1 -1,-0.3 2,-0.0 0, 0.0 -0.247 87.5 150.7 -94.3 43.9 -11.2 14.8 9.6 44 44 A D < - 0 0 47 -3,-1.4 3,-0.1 -2,-0.3 -5,-0.0 -0.200 46.8-144.1 -70.8 166.9 -10.8 16.0 6.0 45 45 A V S S+ 0 0 155 1,-0.4 2,-0.3 0, 0.0 -1,-0.1 0.601 81.7 2.8-105.3 -20.8 -13.8 17.0 3.9 46 46 A A S S- 0 0 66 -8,-0.0 -1,-0.4 3,-0.0 2,-0.1 -0.955 81.9 -96.5-165.1 147.3 -12.4 15.6 0.7 47 47 A A - 0 0 36 -2,-0.3 -8,-0.3 1,-0.1 3,-0.1 -0.432 23.8-140.9 -69.0 140.1 -9.4 13.6 -0.6 48 48 A L S S- 0 0 87 -10,-1.5 2,-0.3 1,-0.2 -9,-0.2 0.887 81.9 -6.2 -67.5 -40.3 -6.6 15.7 -2.0 49 49 A E E -D 38 0A 125 -11,-0.7 -11,-3.9 2,-0.0 2,-0.4 -0.949 61.4-144.1-150.3 166.6 -6.0 13.1 -4.7 50 50 A S E +D 37 0A 63 -2,-0.3 -13,-0.2 -13,-0.3 -11,-0.0 -0.987 16.9 172.7-142.0 128.2 -7.1 9.6 -5.8 51 51 A Q E -D 36 0A 77 -15,-1.4 -15,-3.2 -2,-0.4 2,-0.1 -0.974 24.7-134.8-140.6 122.3 -5.0 6.9 -7.4 52 52 A P E -D 35 0A 59 0, 0.0 -17,-0.2 0, 0.0 4,-0.1 -0.452 11.6-136.8 -75.0 146.0 -6.1 3.3 -8.1 53 53 A L + 0 0 3 -19,-2.2 2,-0.9 -2,-0.1 -18,-0.1 -0.135 60.3 133.3 -92.8 36.3 -3.7 0.5 -7.2 54 54 A L S S- 0 0 145 1,-0.2 48,-0.1 3,-0.0 3,-0.1 -0.799 84.3 -4.3 -93.2 104.0 -4.6 -1.2 -10.5 55 55 A G S S+ 0 0 47 -2,-0.9 21,-0.7 1,-0.4 -1,-0.2 0.088 108.1 120.5 102.3 -20.2 -1.3 -2.3 -12.1 56 56 A F E -E 75 0A 10 19,-0.2 -1,-0.4 -4,-0.1 2,-0.3 -0.032 45.1-157.3 -67.6 176.3 0.7 -0.6 -9.4 57 57 A T E -E 74 0A 50 17,-3.8 17,-1.2 21,-0.2 2,-0.3 -0.928 6.8-148.3-150.4 171.1 3.2 -2.5 -7.1 58 58 A V E +E 73 0A 8 -2,-0.3 2,-0.3 15,-0.3 15,-0.2 -0.973 15.2 169.2-145.1 156.0 4.9 -2.3 -3.8 59 59 A T E -E 72 0A 68 13,-1.4 13,-2.4 -2,-0.3 2,-0.2 -0.971 36.4 -98.7-165.2 153.5 8.2 -3.4 -2.3 60 60 A L E -E 71 0A 57 -2,-0.3 2,-0.4 11,-0.2 11,-0.2 -0.516 34.8-154.4 -78.3 144.9 10.4 -3.0 0.8 61 61 A V - 0 0 14 9,-1.7 9,-0.4 -2,-0.2 8,-0.2 -0.959 18.4-139.2-124.0 140.7 13.2 -0.5 0.6 62 62 A K + 0 0 146 -2,-0.4 7,-0.2 6,-0.1 -1,-0.1 0.953 44.1 170.0 -58.7 -53.1 16.4 -0.5 2.7 63 63 A D - 0 0 17 1,-0.1 -43,-0.0 2,-0.1 7,-0.0 0.191 42.7-113.5 59.2 171.4 16.3 3.2 3.2 64 64 A E S S+ 0 0 162 3,-0.0 -1,-0.1 0, 0.0 -44,-0.0 0.744 109.7 49.1-107.1 -39.9 18.6 5.0 5.6 65 65 A N S S+ 0 0 109 2,-0.0 2,-0.2 4,-0.0 -2,-0.1 0.951 124.4 20.3 -65.6 -51.3 16.1 6.2 8.2 66 66 A S - 0 0 12 1,-0.1 18,-0.0 -5,-0.1 0, 0.0 -0.635 59.2-151.8-113.9 172.9 14.5 2.9 8.5 67 67 A E S S- 0 0 149 -2,-0.2 -1,-0.1 -3,-0.0 -2,-0.0 0.645 94.9 -9.9-114.0 -30.7 15.5 -0.7 7.7 68 68 A S S S+ 0 0 44 -8,-0.1 24,-0.2 3,-0.0 -6,-0.1 0.004 113.7 87.3-161.8 35.0 12.2 -2.3 7.1 69 69 A K S S+ 0 0 67 -8,-0.2 16,-3.9 -7,-0.2 2,-0.4 0.242 82.9 63.7-120.3 6.1 9.6 0.3 8.2 70 70 A V E - F 0 84A 0 -9,-0.4 -9,-1.7 14,-0.3 14,-0.3 -0.998 60.6-178.5-136.2 137.1 9.5 2.1 4.9 71 71 A F E -EF 60 83A 0 12,-3.3 12,-2.7 -2,-0.4 2,-0.4 -0.692 19.1-125.0-125.3 178.0 8.3 0.9 1.5 72 72 A Q E -EF 59 82A 34 -13,-2.4 -13,-1.4 10,-0.2 2,-0.9 -0.974 14.4-130.2-130.3 143.5 8.1 2.2 -2.1 73 73 A L E -EF 58 81A 6 8,-3.6 7,-4.4 -2,-0.4 8,-0.9 -0.810 28.8-162.7 -95.5 101.7 5.1 2.4 -4.4 74 74 A L E -EF 57 79A 26 -17,-1.2 -17,-3.8 -2,-0.9 2,-0.4 -0.563 6.5-163.6 -84.1 148.0 6.2 0.9 -7.7 75 75 A H E > S-EF 56 78A 52 3,-3.6 3,-1.0 -19,-0.3 -19,-0.2 -0.838 77.4 -24.0-137.0 96.4 4.2 1.5 -10.9 76 76 A K T 3 S- 0 0 174 -21,-0.7 3,-0.1 -2,-0.4 -20,-0.1 0.333 131.3 -47.9 84.1 -6.6 4.9 -0.8 -13.8 77 77 A G T 3 S+ 0 0 54 1,-0.5 2,-0.3 -20,-0.0 -1,-0.2 0.038 119.7 102.0 132.9 -23.2 8.3 -1.4 -12.2 78 78 A M E < S- F 0 75A 108 -3,-1.0 -3,-3.6 1,-0.1 -1,-0.5 -0.706 79.8-106.2 -94.4 143.8 9.4 2.1 -11.5 79 79 A V E - F 0 74A 58 -2,-0.3 -5,-0.3 -5,-0.3 3,-0.1 -0.526 33.3-179.2 -69.8 124.7 9.1 3.7 -8.1 80 80 A F E - 0 0 57 -7,-4.4 2,-0.3 1,-0.4 -6,-0.2 0.836 63.8 -22.1 -91.4 -41.0 6.3 6.2 -8.0 81 81 A Y E - F 0 73A 49 -8,-0.9 -8,-3.6 -63,-0.0 -1,-0.4 -0.971 60.6-114.1-167.4 156.5 6.7 7.4 -4.4 82 82 A V E -BF 17 72A 1 -65,-4.2 -65,-0.9 -2,-0.3 2,-0.3 -0.576 25.1-168.1 -95.6 160.4 8.1 6.4 -1.0 83 83 A F E -BF 16 71A 1 -12,-2.7 -12,-3.3 -67,-0.2 2,-0.4 -0.947 8.1-156.9-153.9 128.6 6.2 5.7 2.1 84 84 A K E -BF 15 70A 43 -69,-0.8 -69,-0.7 -2,-0.3 2,-0.3 -0.904 12.1-153.6-109.6 133.6 7.2 5.2 5.8 85 85 A A - 0 0 2 -16,-3.9 -71,-0.1 -2,-0.4 4,-0.0 -0.712 26.3-111.9-103.9 155.6 5.2 3.3 8.2 86 86 A D S S- 0 0 121 -2,-0.3 2,-0.2 -73,-0.2 -1,-0.1 0.952 92.6 -8.2 -44.8 -78.2 5.1 3.8 12.0 87 87 A D S > S- 0 0 104 -3,-0.1 4,-2.4 1,-0.0 5,-0.1 -0.505 80.6 -93.9-113.9-176.5 6.7 0.5 12.9 88 88 A A H > S+ 0 0 44 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.923 123.4 56.9 -64.7 -46.1 7.7 -2.6 11.1 89 89 A H H > S+ 0 0 156 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.917 109.3 46.4 -50.2 -49.8 4.4 -4.3 11.9 90 90 A S H >> S+ 0 0 18 2,-0.2 4,-2.5 1,-0.2 3,-0.6 0.966 107.2 56.4 -57.6 -57.3 2.6 -1.4 10.2 91 91 A T H 3X S+ 0 0 0 -4,-2.4 4,-4.0 1,-0.3 -1,-0.2 0.892 105.8 51.4 -39.3 -57.3 4.9 -1.4 7.2 92 92 A Q H 3X S+ 0 0 112 -4,-2.5 4,-3.5 1,-0.2 5,-0.4 0.894 110.2 50.5 -48.7 -46.8 4.0 -5.0 6.5 93 93 A R H X S+ 0 0 22 -4,-4.0 4,-2.8 -5,-0.3 3,-1.0 0.985 116.1 36.3 -53.7 -70.5 2.8 -3.5 2.2 96 96 A D H 3X S+ 0 0 95 -4,-3.5 4,-3.8 1,-0.3 -1,-0.2 0.834 116.2 58.3 -52.0 -34.6 0.5 -6.5 2.1 97 97 A A H 3< S+ 0 0 16 -4,-3.5 -1,-0.3 -5,-0.4 -2,-0.2 0.877 112.6 38.1 -63.2 -38.8 -2.3 -3.9 2.0 98 98 A F H