==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 28-MAY-04 1WHY . COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN RIKEN CDNA 1810017N16; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7278.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 52.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 17.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 17.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 74 A G 0 0 126 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-156.3 3.0 1.2 26.9 2 75 A S - 0 0 121 1,-0.2 3,-0.1 3,-0.0 2,-0.1 0.077 360.0-131.3 -35.8 145.5 0.6 3.1 24.8 3 76 A S - 0 0 128 1,-0.4 -1,-0.2 0, 0.0 0, 0.0 -0.201 51.2-100.1 -98.3 41.3 -2.7 1.3 24.2 4 77 A G - 0 0 62 1,-0.1 2,-0.4 -2,-0.1 -1,-0.4 -0.165 43.9 -80.1 72.2-170.5 -2.7 1.8 20.5 5 78 A S + 0 0 127 -3,-0.1 2,-0.3 48,-0.1 -1,-0.1 -0.972 45.0 172.9-139.4 122.1 -4.8 4.5 18.7 6 79 A S + 0 0 132 -2,-0.4 2,-0.2 2,-0.0 -2,-0.0 -0.936 11.2 137.8-128.5 150.9 -8.5 4.3 17.8 7 80 A G - 0 0 49 -2,-0.3 2,-0.5 0, 0.0 -2,-0.0 -0.537 56.8 -50.8-154.3-138.7 -10.9 6.9 16.4 8 81 A K - 0 0 196 -2,-0.2 -2,-0.0 2,-0.1 0, 0.0 -0.885 50.8-132.8-125.4 100.5 -13.7 7.2 13.8 9 82 A I + 0 0 150 -2,-0.5 -3,-0.0 1,-0.1 0, 0.0 -0.007 43.2 143.7 -45.3 151.9 -13.0 5.9 10.3 10 83 A G - 0 0 68 2,-0.1 2,-1.9 0, 0.0 -1,-0.1 0.034 25.7-171.0 165.9 73.9 -13.9 8.2 7.5 11 84 A Y - 0 0 153 3,-0.0 3,-0.1 1,-0.0 -2,-0.1 -0.551 24.7-169.8 -80.0 80.8 -11.8 8.5 4.4 12 85 A G - 0 0 63 -2,-1.9 -2,-0.1 1,-0.1 -1,-0.0 0.158 38.9 -51.2 -58.9-175.6 -13.5 11.4 2.8 13 86 A K + 0 0 202 1,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.186 61.0 174.9 -58.9 152.5 -12.8 12.6 -0.8 14 87 A A - 0 0 49 -3,-0.1 75,-0.1 77,-0.1 3,-0.1 -0.845 30.0-118.9-165.9 124.9 -9.2 13.1 -1.8 15 88 A N - 0 0 111 -2,-0.3 2,-0.1 1,-0.1 0, 0.0 -0.332 40.9-102.3 -65.6 144.0 -7.5 14.0 -5.1 16 89 A P + 0 0 57 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.435 46.6 173.5 -69.7 137.5 -5.0 11.5 -6.5 17 90 A T - 0 0 40 2,-0.4 73,-0.2 -2,-0.1 74,-0.0 -0.994 47.5-109.9-146.5 150.4 -1.3 12.2 -6.1 18 91 A T S S+ 0 0 33 -2,-0.3 2,-0.2 43,-0.1 27,-0.1 0.825 101.3 80.8 -45.9 -35.7 2.0 10.5 -6.7 19 92 A R - 0 0 100 71,-0.2 71,-0.6 40,-0.2 -2,-0.4 -0.470 67.0-164.4 -76.1 145.9 2.3 10.3 -2.9 20 93 A L E -A 89 0A 0 38,-0.5 38,-1.0 69,-0.2 2,-0.8 -0.998 16.6-136.5-136.0 135.6 0.4 7.5 -1.1 21 94 A W E -AB 88 57A 86 67,-3.0 67,-2.2 -2,-0.4 2,-0.5 -0.802 25.1-172.5 -94.2 108.1 -0.4 7.1 2.6 22 95 A V E +AB 87 56A 0 34,-2.4 34,-2.5 -2,-0.8 65,-0.2 -0.863 14.2 154.5-104.1 131.4 0.2 3.5 3.7 23 96 A G E +A 86 0A 2 63,-2.6 63,-0.5 -2,-0.5 32,-0.1 -0.458 37.0 83.0-131.7-156.0 -0.8 2.3 7.2 24 97 A G + 0 0 56 1,-0.2 2,-0.2 -2,-0.2 -1,-0.1 0.739 66.7 148.2 61.6 22.0 -1.7 -0.8 9.1 25 98 A L + 0 0 25 29,-1.1 -1,-0.2 28,-0.1 5,-0.0 -0.615 19.9 171.9 -89.9 149.2 2.0 -1.4 9.5 26 99 A G - 0 0 37 -2,-0.2 28,-0.0 -3,-0.1 -1,-0.0 -0.736 52.0 -75.1-140.6-171.0 3.4 -3.2 12.6 27 100 A P S S+ 0 0 151 0, 0.0 -2,-0.0 0, 0.0 24,-0.0 0.506 127.4 50.6 -69.7 -3.1 6.6 -4.7 14.1 28 101 A N S S+ 0 0 120 2,-0.0 -3,-0.1 0, 0.0 51,-0.0 0.855 86.1 87.8 -99.1 -52.9 6.1 -7.6 11.8 29 102 A T - 0 0 33 1,-0.1 2,-0.5 49,-0.1 3,-0.1 -0.211 68.7-145.9 -51.5 133.4 5.6 -6.1 8.4 30 103 A S > - 0 0 74 1,-0.2 4,-1.5 -5,-0.0 3,-0.3 -0.922 9.2-142.4-110.9 124.6 9.0 -5.5 6.6 31 104 A L H >> S+ 0 0 52 -2,-0.5 4,-2.9 1,-0.2 3,-0.8 0.930 101.2 57.7 -44.2 -60.1 9.5 -2.5 4.3 32 105 A A H 3> S+ 0 0 72 1,-0.3 4,-1.7 2,-0.2 -1,-0.2 0.884 102.3 55.0 -37.4 -57.3 11.6 -4.5 1.9 33 106 A A H 3> S+ 0 0 50 -3,-0.3 4,-1.6 1,-0.2 3,-0.3 0.899 115.4 38.9 -45.2 -49.8 8.7 -6.9 1.4 34 107 A L H X S+ 0 0 0 -4,-3.1 3,-2.5 1,-0.2 4,-0.8 0.930 108.9 57.9 -73.6 -47.8 4.6 -1.7 -4.6 39 112 A D H 3< S+ 0 0 70 -4,-1.7 -2,-0.2 -5,-0.5 -1,-0.2 0.880 87.5 77.2 -49.5 -42.7 7.4 -1.5 -7.1 40 113 A R T 3< S+ 0 0 211 -4,-2.1 -1,-0.3 1,-0.2 -2,-0.2 0.764 97.1 50.1 -39.8 -28.6 5.7 -4.1 -9.2 41 114 A F T <4 S- 0 0 67 -3,-2.5 2,-0.3 1,-0.3 -1,-0.2 0.979 127.4 -30.0 -76.6 -63.4 3.4 -1.2 -10.2 42 115 A G S < S- 0 0 15 -4,-0.8 2,-0.4 23,-0.1 -1,-0.3 -0.990 80.0 -65.0-156.1 160.5 6.0 1.4 -11.2 43 116 A S - 0 0 92 -2,-0.3 18,-1.3 1,-0.1 2,-0.2 -0.265 59.0-128.5 -50.6 103.6 9.5 2.7 -10.6 44 117 A I E -C 60 0A 40 -2,-0.4 16,-0.3 16,-0.2 -1,-0.1 -0.390 19.4-163.2 -60.6 122.4 9.2 3.9 -6.9 45 118 A R E - 0 0 154 14,-2.5 2,-0.3 1,-0.3 15,-0.2 0.973 65.9 -14.3 -71.3 -57.2 10.4 7.4 -6.7 46 119 A T E -C 59 0A 67 13,-0.7 13,-2.3 2,-0.0 2,-0.3 -0.953 58.8-152.5-145.5 163.3 10.9 7.6 -2.9 47 120 A I E -C 58 0A 52 -2,-0.3 2,-0.4 11,-0.3 11,-0.2 -0.980 2.2-163.6-140.1 151.4 9.9 5.7 0.3 48 121 A D E -C 57 0A 73 9,-0.6 9,-0.7 -2,-0.3 2,-0.5 -0.987 2.9-162.8-140.1 127.5 9.4 6.5 3.9 49 122 A H E +C 56 0A 125 -2,-0.4 2,-0.4 7,-0.2 7,-0.2 -0.939 14.5 172.3-114.0 119.0 9.3 4.2 6.9 50 123 A V + 0 0 45 5,-1.3 5,-0.3 -2,-0.5 -25,-0.1 -0.988 17.3 179.2-129.8 127.6 7.7 5.4 10.2 51 124 A K S S+ 0 0 179 -2,-0.4 -1,-0.1 3,-0.2 5,-0.0 0.866 74.4 72.5 -89.9 -44.2 7.0 3.3 13.3 52 125 A G S S+ 0 0 72 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.879 124.1 9.1 -34.3 -68.5 5.6 6.0 15.5 53 126 A D S S- 0 0 127 2,-0.1 -1,-0.3 -30,-0.0 -2,-0.1 0.572 103.5-123.4 -92.1 -12.3 2.3 6.3 13.6 54 127 A S + 0 0 35 1,-0.2 -29,-1.1 -31,-0.1 2,-0.3 0.880 62.4 142.6 71.1 39.2 3.1 3.2 11.5 55 128 A F - 0 0 45 -5,-0.3 -5,-1.3 -32,-0.1 2,-0.4 -0.844 35.0-160.3-113.8 150.1 2.7 5.2 8.2 56 129 A A E -BC 22 49A 2 -34,-2.5 -34,-2.4 -2,-0.3 2,-0.6 -0.994 2.9-158.0-133.6 129.9 4.7 4.8 5.0 57 130 A Y E -BC 21 48A 57 -9,-0.7 -9,-0.6 -2,-0.4 2,-0.5 -0.924 11.8-178.2-110.9 119.1 5.0 7.4 2.2 58 131 A I E - C 0 47A 3 -38,-1.0 -38,-0.5 -2,-0.6 -11,-0.3 -0.964 11.2-153.5-120.5 122.0 6.0 6.1 -1.3 59 132 A Q E - C 0 46A 24 -13,-2.3 -14,-2.5 -2,-0.5 -13,-0.7 -0.584 5.9-152.1 -91.2 154.1 6.5 8.5 -4.2 60 133 A Y E - C 0 44A 3 -16,-0.3 -16,-0.2 -2,-0.2 -42,-0.1 -0.991 21.5-133.1-130.8 133.6 6.1 7.5 -7.9 61 134 A E S S+ 0 0 132 -18,-1.3 2,-0.3 -2,-0.4 -1,-0.1 0.832 98.6 34.9 -48.8 -35.3 7.8 9.0 -10.9 62 135 A S S > S- 0 0 75 -19,-0.2 4,-1.1 1,-0.1 -17,-0.1 -0.866 74.7-135.6-122.7 156.5 4.3 9.1 -12.5 63 136 A L H > S+ 0 0 68 -2,-0.3 4,-2.1 2,-0.2 3,-0.2 0.957 101.0 58.6 -73.1 -53.2 0.8 9.7 -11.1 64 137 A D H > S+ 0 0 124 1,-0.3 4,-2.4 2,-0.2 3,-0.3 0.912 105.7 49.5 -40.3 -61.5 -1.0 6.8 -12.9 65 138 A A H > S+ 0 0 21 1,-0.2 4,-2.2 2,-0.2 5,-0.3 0.903 107.5 55.7 -46.5 -49.5 1.3 4.2 -11.4 66 139 A A H X S+ 0 0 0 -4,-1.1 4,-2.6 1,-0.2 -1,-0.2 0.921 108.4 47.2 -50.5 -50.5 0.7 5.7 -7.9 67 140 A Q H X S+ 0 0 66 -4,-2.1 4,-2.6 -3,-0.3 5,-0.3 0.941 107.4 56.6 -57.9 -50.7 -3.1 5.3 -8.4 68 141 A A H X S+ 0 0 27 -4,-2.4 4,-2.7 1,-0.2 5,-0.3 0.924 112.4 41.0 -46.4 -55.1 -2.7 1.7 -9.6 69 142 A A H X>S+ 0 0 0 -4,-2.2 4,-2.9 1,-0.2 5,-0.5 0.908 110.5 59.4 -61.8 -43.6 -0.8 0.7 -6.4 70 143 A C H X5S+ 0 0 0 -4,-2.6 4,-1.9 -5,-0.3 -2,-0.2 0.945 117.5 29.9 -50.0 -57.1 -3.2 2.8 -4.2 71 144 A A H <5S+ 0 0 49 -4,-2.6 -2,-0.2 2,-0.2 -1,-0.2 0.984 121.4 50.2 -68.2 -60.2 -6.3 0.9 -5.3 72 145 A K H <5S+ 0 0 137 -4,-2.7 -3,-0.2 -5,-0.3 -2,-0.2 0.921 117.0 41.4 -43.0 -58.9 -4.6 -2.5 -6.0 73 146 A M H ><5S+ 0 0 2 -4,-2.9 3,-1.6 -5,-0.3 12,-0.3 0.908 85.6 112.7 -57.9 -44.3 -2.9 -2.5 -2.6 74 147 A R T 3<