==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-MAY-04 1WIH . COMPND 2 MOLECULE: MITOCHONDRIAL RIBOSOME RECYCLING FACTOR; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR T.ABE,H.HIROTA,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN . 84 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5703.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 56.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 26.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 70 0, 0.0 2,-0.3 0, 0.0 26,-0.0 0.000 360.0 360.0 360.0 87.4 -1.1 -9.4 -5.4 2 2 A S - 0 0 78 4,-0.1 3,-0.4 0, 0.0 4,-0.4 -0.888 360.0 -84.1-134.1 163.8 -3.4 -10.2 -8.3 3 3 A S S S- 0 0 123 -2,-0.3 0, 0.0 1,-0.2 0, 0.0 -0.553 107.4 -8.1 -71.9 123.8 -3.9 -9.2 -11.9 4 4 A G S S+ 0 0 85 -2,-0.4 -1,-0.2 2,-0.1 3,-0.1 0.976 101.7 109.3 51.3 79.3 -5.8 -5.9 -12.2 5 5 A S S S- 0 0 84 -3,-0.4 2,-0.3 1,-0.1 -2,-0.1 0.437 80.1 -1.3-141.6 -57.4 -6.8 -5.4 -8.6 6 6 A S > - 0 0 22 -4,-0.4 2,-2.9 68,-0.0 3,-1.0 -0.968 62.1-122.6-150.5 130.3 -4.9 -2.5 -7.0 7 7 A G T 3 S+ 0 0 36 -2,-0.3 0, 0.0 1,-0.2 0, 0.0 -0.407 93.7 80.2 -71.4 70.7 -2.2 -0.2 -8.3 8 8 A L T 3 S+ 0 0 4 -2,-2.9 14,-0.7 3,-0.1 3,-0.4 0.485 70.4 67.1-138.4 -49.6 0.2 -1.2 -5.5 9 9 A D S < S+ 0 0 47 -3,-1.0 14,-0.6 1,-0.3 -2,-0.1 0.741 113.5 41.4 -51.0 -22.9 1.8 -4.5 -6.4 10 10 A H S S+ 0 0 126 -4,-0.3 -1,-0.3 11,-0.1 -3,-0.1 0.709 95.0 104.2 -95.5 -27.3 3.3 -2.4 -9.2 11 11 A I - 0 0 10 -3,-0.4 11,-2.5 10,-0.1 2,-0.4 -0.108 67.6-132.2 -53.1 153.8 4.0 0.6 -7.0 12 12 A T E -A 21 0A 67 9,-0.3 2,-0.5 10,-0.1 9,-0.3 -0.910 9.8-149.2-116.5 142.2 7.7 1.0 -6.0 13 13 A V E -A 20 0A 0 7,-4.0 7,-1.5 -2,-0.4 2,-0.6 -0.929 18.6-126.0-113.0 132.5 9.0 1.7 -2.5 14 14 A V E -A 19 0A 99 -2,-0.5 5,-0.2 35,-0.3 39,-0.1 -0.666 34.2-170.1 -79.1 116.4 12.1 3.8 -1.9 15 15 A T E > -A 18 0A 30 3,-3.0 3,-0.5 -2,-0.6 -1,-0.0 -0.257 42.5 -71.9 -95.5-174.8 14.5 1.7 0.2 16 16 A A T 3 S- 0 0 93 1,-0.2 -2,-0.0 -2,-0.1 3,-0.0 0.923 121.2 -15.4 -39.6 -78.0 17.7 2.7 2.0 17 17 A D T 3 S+ 0 0 169 2,-0.0 2,-0.3 -3,-0.0 -1,-0.2 -0.385 132.3 44.9-129.2 52.7 19.8 3.0 -1.1 18 18 A G E < S-A 15 0A 37 -3,-0.5 -3,-3.0 2,-0.0 2,-0.3 -0.971 70.7-113.7-174.7 175.7 17.6 1.2 -3.7 19 19 A K E +A 14 0A 140 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.938 29.9 164.6-129.2 151.0 14.2 0.8 -5.1 20 20 A V E -A 13 0A 49 -7,-1.5 -7,-4.0 -2,-0.3 2,-0.1 -0.966 38.6 -88.8-157.3 165.7 11.8 -2.2 -5.1 21 21 A A E >> -A 12 0A 24 -2,-0.3 3,-1.3 -9,-0.3 4,-1.2 -0.449 36.1-116.3 -79.9 154.5 8.1 -3.0 -5.7 22 22 A L H 3> S+ 0 0 1 -11,-2.5 4,-0.6 -14,-0.7 -13,-0.2 0.704 117.5 64.7 -61.6 -19.0 5.6 -2.9 -2.9 23 23 A N H 34 S+ 0 0 62 -14,-0.6 -1,-0.3 -12,-0.4 -2,-0.1 -0.111 102.1 50.2 -95.3 34.2 5.3 -6.7 -3.5 24 24 A Q H <4 S+ 0 0 116 -3,-1.3 -2,-0.2 -4,-0.1 -1,-0.1 0.559 108.1 41.3-131.8 -54.7 8.9 -7.1 -2.4 25 25 A I H < S+ 0 0 2 -4,-1.2 17,-0.3 1,-0.1 2,-0.3 0.693 131.9 14.8 -72.7 -19.4 9.5 -5.4 0.9 26 26 A G S < S- 0 0 5 -4,-0.6 2,-0.6 -5,-0.3 14,-0.2 -0.956 80.8-107.7-150.0 165.2 6.1 -6.8 1.9 27 27 A Q E -B 39 0B 136 12,-2.1 12,-2.3 -2,-0.3 2,-0.4 -0.886 28.8-140.6-103.2 120.2 3.5 -9.3 1.0 28 28 A I E +B 38 0B 19 -2,-0.6 2,-0.3 10,-0.2 10,-0.2 -0.663 29.6 165.4 -81.3 127.0 0.3 -7.9 -0.5 29 29 A S E -B 37 0B 74 8,-3.5 8,-1.3 -2,-0.4 2,-0.3 -0.857 34.0-132.0-148.0 106.9 -2.8 -9.8 0.7 30 30 A M E +B 36 0B 94 -2,-0.3 6,-0.2 6,-0.2 -2,-0.0 -0.417 32.2 168.2 -61.3 118.3 -6.3 -8.5 0.3 31 31 A K E + 0 0 159 4,-1.9 -1,-0.2 -2,-0.3 5,-0.1 0.892 59.5 30.6 -94.3 -71.3 -8.1 -8.8 3.6 32 32 A S E > S-B 35 0B 36 3,-0.7 3,-0.9 1,-0.1 5,-0.1 -0.213 93.1 -98.7 -82.7 177.1 -11.3 -6.8 3.4 33 33 A P T 3 S+ 0 0 111 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.482 126.0 18.5 -75.0 -2.5 -13.4 -6.2 0.3 34 34 A Q T 3 S+ 0 0 105 1,-0.1 40,-3.8 42,-0.0 2,-0.3 -0.063 108.7 89.5-159.2 40.4 -11.7 -2.8 0.1 35 35 A V E < -BC 32 73B 12 -3,-0.9 -4,-1.9 38,-0.3 -3,-0.7 -0.917 54.6-156.3-148.1 116.1 -8.5 -3.1 2.2 36 36 A I E -BC 30 72B 2 36,-3.1 36,-2.1 -2,-0.3 2,-0.4 -0.831 12.3-153.7 -96.8 124.6 -5.1 -4.3 0.9 37 37 A L E -BC 29 71B 19 -8,-1.3 -8,-3.5 -2,-0.5 2,-0.4 -0.794 7.7-168.2 -99.6 139.4 -2.8 -5.7 3.6 38 38 A V E -BC 28 70B 2 32,-2.7 32,-3.0 -2,-0.4 2,-0.4 -0.895 11.0-150.9-131.4 101.2 0.9 -5.6 3.2 39 39 A N E -BC 27 69B 61 -12,-2.3 -12,-2.1 -2,-0.4 30,-0.3 -0.570 12.8-176.7 -73.7 126.7 2.9 -7.7 5.6 40 40 A M > + 0 0 0 28,-4.6 3,-1.2 -2,-0.4 6,-0.2 -0.095 42.2 125.2-114.1 31.7 6.3 -6.2 6.2 41 41 A A T 3 S+ 0 0 66 1,-0.3 -1,-0.2 27,-0.2 -15,-0.1 0.689 81.4 48.9 -62.5 -17.5 7.6 -8.9 8.5 42 42 A S T 3 S+ 0 0 94 -17,-0.3 -1,-0.3 -3,-0.2 -16,-0.1 0.584 127.9 22.9 -95.5 -15.2 10.5 -9.1 6.0 43 43 A F X + 0 0 79 -3,-1.2 3,-0.9 -18,-0.2 -1,-0.2 -0.437 63.5 152.2-152.0 68.7 11.0 -5.4 6.2 44 44 A P T 3 S+ 0 0 67 0, 0.0 3,-0.3 0, 0.0 4,-0.2 0.566 81.0 57.0 -75.0 -9.3 9.6 -3.8 9.4 45 45 A E T 3 S+ 0 0 162 1,-0.2 4,-0.2 -5,-0.1 3,-0.1 0.544 106.3 47.8 -95.5 -11.8 12.3 -1.1 9.0 46 46 A C S <> S+ 0 0 21 -3,-0.9 4,-1.9 -6,-0.2 -1,-0.2 0.055 79.9 108.7-113.7 20.2 11.0 -0.2 5.5 47 47 A T H > S+ 0 0 12 -3,-0.3 4,-1.9 2,-0.2 3,-0.2 0.966 80.5 44.4 -60.2 -56.5 7.4 -0.1 6.7 48 48 A A H > S+ 0 0 64 1,-0.2 4,-3.2 -4,-0.2 -1,-0.2 0.928 106.1 63.0 -53.5 -49.8 7.1 3.7 6.5 49 49 A A H > S+ 0 0 16 1,-0.2 4,-2.5 2,-0.2 -35,-0.3 0.902 104.4 47.3 -39.7 -58.0 8.9 3.6 3.1 50 50 A A H X S+ 0 0 0 -4,-1.9 4,-2.1 1,-0.2 -1,-0.2 0.958 109.7 51.4 -49.0 -62.8 6.0 1.6 1.7 51 51 A I H X S+ 0 0 23 -4,-1.9 4,-2.2 1,-0.2 -1,-0.2 0.874 110.3 52.9 -41.5 -47.1 3.4 3.9 3.2 52 52 A K H X S+ 0 0 121 -4,-3.2 4,-3.8 2,-0.2 3,-0.4 0.980 103.1 53.8 -53.1 -68.1 5.3 6.7 1.6 53 53 A A H < S+ 0 0 9 -4,-2.5 -1,-0.2 1,-0.3 -2,-0.2 0.854 108.3 52.1 -31.4 -59.7 5.3 5.2 -1.9 54 54 A I H ><>S+ 0 0 0 -4,-2.1 3,-1.9 1,-0.3 5,-0.6 0.928 115.4 39.7 -44.2 -58.8 1.5 4.9 -1.7 55 55 A R H 3<5S+ 0 0 135 -4,-2.2 4,-0.3 -3,-0.4 -1,-0.3 0.842 117.4 50.6 -60.9 -34.9 1.3 8.6 -0.7 56 56 A E T 3<5S+ 0 0 155 -4,-3.8 -1,-0.3 1,-0.2 -2,-0.2 0.057 89.4 89.7 -91.0 24.0 4.0 9.3 -3.2 57 57 A S T < 5S- 0 0 33 -3,-1.9 -1,-0.2 2,-0.3 -2,-0.1 -0.338 111.1-101.5-115.1 47.9 2.0 7.4 -5.8 58 58 A G T 5S+ 0 0 87 -3,-0.2 2,-0.5 1,-0.2 -2,-0.1 0.762 92.2 122.3 37.7 31.6 -0.1 10.2 -7.2 59 59 A M < - 0 0 57 -5,-0.6 2,-3.7 -4,-0.3 -2,-0.3 -0.923 60.8-150.4-128.0 105.9 -2.7 8.7 -4.9 60 60 A N + 0 0 172 -2,-0.5 2,-0.2 -4,-0.1 -5,-0.1 -0.306 53.3 139.0 -70.1 60.9 -4.3 10.9 -2.3 61 61 A L - 0 0 43 -2,-3.7 -2,-0.1 -7,-0.2 -4,-0.1 -0.688 54.9-132.0-106.6 161.0 -4.9 7.8 -0.2 62 62 A N - 0 0 111 -2,-0.2 2,-0.1 11,-0.2 -2,-0.1 -0.836 25.7-163.9-117.2 91.3 -4.4 7.3 3.5 63 63 A P - 0 0 11 0, 0.0 9,-0.2 0, 0.0 2,-0.2 -0.450 8.1-144.1 -75.0 146.2 -2.4 4.0 4.1 64 64 A E E -D 71 0B 82 7,-4.6 7,-0.8 -2,-0.1 2,-0.3 -0.501 6.1-153.2-103.8 174.6 -2.4 2.5 7.6 65 65 A V E +D 70 0B 72 5,-0.3 2,-0.5 -2,-0.2 5,-0.2 -0.895 11.1 179.0-154.6 118.9 0.3 0.6 9.5 66 66 A E E > -D 69 0B 91 3,-1.7 3,-3.1 -2,-0.3 2,-2.3 -0.920 66.8 -61.9-127.2 104.7 -0.2 -2.0 12.2 67 67 A G T 3 S- 0 0 74 -2,-0.5 3,-0.1 1,-0.3 0, 0.0 -0.369 122.7 -21.5 61.5 -81.3 2.9 -3.5 13.7 68 68 A T T 3 S+ 0 0 52 -2,-2.3 -28,-4.6 1,-0.1 2,-0.6 0.129 121.5 91.3-143.6 16.1 4.2 -4.9 10.5 69 69 A L E < -CD 39 66B 61 -3,-3.1 -3,-1.7 -30,-0.3 -30,-0.3 -0.923 62.0-154.0-122.4 104.4 1.0 -5.1 8.5 70 70 A I E -CD 38 65B 1 -32,-3.0 -32,-2.7 -2,-0.6 2,-0.4 -0.533 8.8-149.0 -77.5 141.3 0.3 -2.1 6.3 71 71 A R E -CD 37 64B 94 -7,-0.8 -7,-4.6 -34,-0.2 -34,-0.2 -0.944 12.3-171.7-116.6 133.6 -3.4 -1.4 5.5 72 72 A V E -C 36 0B 5 -36,-2.1 -36,-3.1 -2,-0.4 2,-0.2 -0.879 12.4-156.7-127.7 97.8 -4.6 0.2 2.3 73 73 A P E -C 35 0B 45 0, 0.0 -38,-0.3 0, 0.0 -11,-0.2 -0.495 16.0-127.8 -75.0 140.7 -8.3 1.1 2.3 74 74 A I - 0 0 54 -40,-3.8 -68,-0.0 -2,-0.2 -40,-0.0 -0.710 21.6-125.7 -91.3 139.6 -10.0 1.4 -1.0 75 75 A P - 0 0 79 0, 0.0 2,-0.1 0, 0.0 3,-0.1 -0.145 30.5 -93.6 -75.0 174.5 -12.0 4.5 -1.8 76 76 A K - 0 0 186 1,-0.2 -42,-0.0 2,-0.1 0, 0.0 -0.467 52.2 -78.6 -87.7 162.0 -15.6 4.6 -2.9 77 77 A V S S+ 0 0 131 -2,-0.1 -1,-0.2 2,-0.1 0, 0.0 -0.168 105.0 31.3 -56.8 152.2 -16.8 4.8 -6.5 78 78 A T S S- 0 0 102 1,-0.1 2,-0.6 -3,-0.1 -2,-0.1 0.846 81.0-129.0 61.7 111.3 -16.6 8.2 -8.2 79 79 A S - 0 0 101 -4,-0.1 -1,-0.1 2,-0.0 -2,-0.1 -0.831 53.6 -61.1 -95.9 118.9 -13.8 10.4 -6.9 80 80 A G S S- 0 0 57 -2,-0.6 2,-0.6 1,-0.1 0, 0.0 0.095 109.3 -10.7 39.9-156.3 -14.9 13.8 -5.9 81 81 A P S S+ 0 0 139 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 -0.612 74.2 173.8 -75.0 113.9 -16.4 16.0 -8.7 82 82 A S + 0 0 75 -2,-0.6 2,-0.1 2,-0.0 -2,-0.0 -0.976 21.2 119.7-127.7 117.9 -15.9 14.3 -12.0 83 83 A S 0 0 122 -2,-0.5 0, 0.0 0, 0.0 0, 0.0 -0.495 360.0 360.0-178.6 100.8 -17.4 15.6 -15.2 84 84 A G 0 0 133 -2,-0.1 -2,-0.0 0, 0.0 0, 0.0 -0.448 360.0 360.0-159.9 360.0 -15.5 16.8 -18.2