==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-MAY-04 1WIV . COMPND 2 MOLECULE: UBIQUITIN-SPECIFIC PROTEASE 14; . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR Y.HIGUCHI,T.ABE,H.HIROTA,K.IZUMI,M.YOSHIDA,S.YOKOYAMA,RIKEN . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6068.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 32 43.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 24 32.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 66 0, 0.0 2,-0.3 0, 0.0 34,-0.1 0.000 360.0 360.0 360.0 87.1 -1.1 9.3 2.4 2 2 A S + 0 0 96 29,-0.2 2,-0.3 2,-0.0 32,-0.1 -0.951 360.0 162.2-177.9 164.6 2.6 9.7 2.8 3 3 A S - 0 0 97 -2,-0.3 2,-0.3 31,-0.0 0, 0.0 -0.952 5.8-178.6 178.8 169.1 6.0 8.1 2.2 4 4 A G - 0 0 67 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.940 4.3-167.2-166.2-177.0 9.7 8.8 2.0 5 5 A S + 0 0 124 -2,-0.3 2,-0.3 0, 0.0 -2,-0.0 -0.866 13.4 151.4 178.0 149.1 13.1 7.3 1.3 6 6 A S + 0 0 118 -2,-0.3 2,-0.1 1,-0.1 -2,-0.0 -0.907 24.6 86.5 179.4 155.5 16.8 8.0 1.6 7 7 A G - 0 0 69 -2,-0.3 2,-0.3 1,-0.1 -1,-0.1 0.050 34.7-162.0 114.0 137.8 20.2 6.3 2.1 8 8 A L + 0 0 166 -2,-0.1 -1,-0.1 2,-0.1 0, 0.0 -0.958 29.8 132.4-154.2 131.9 22.8 4.9 -0.3 9 9 A L S S- 0 0 164 -2,-0.3 -1,-0.0 0, 0.0 0, 0.0 -0.214 84.7 -57.0 179.8 75.4 25.7 2.5 0.3 10 10 A S S S+ 0 0 134 1,-0.2 2,-0.4 2,-0.0 -2,-0.1 0.922 71.2 168.0 40.6 84.2 26.0 -0.3 -2.2 11 11 A H + 0 0 125 2,-0.1 2,-0.4 1,-0.0 -1,-0.2 -0.771 15.0 135.8-129.3 85.5 22.6 -1.9 -1.7 12 12 A M + 0 0 174 -2,-0.4 -2,-0.0 2,-0.1 -1,-0.0 -0.795 61.8 36.6-135.9 91.6 22.0 -4.5 -4.4 13 13 A D S S- 0 0 145 -2,-0.4 -2,-0.1 0, 0.0 3,-0.0 -0.211 115.1 -8.2 168.6 -61.3 20.5 -7.8 -3.2 14 14 A D - 0 0 83 1,-0.0 3,-0.3 3,-0.0 -2,-0.1 -0.979 50.5-125.6-160.1 152.3 18.0 -7.2 -0.4 15 15 A P S S+ 0 0 92 0, 0.0 2,-0.3 0, 0.0 -1,-0.0 0.608 110.2 32.0 -75.0 -12.7 16.8 -4.4 1.9 16 16 A D - 0 0 91 3,-0.1 2,-1.1 -3,-0.0 3,-0.3 -0.766 62.8-179.7-149.1 96.2 17.7 -6.6 4.9 17 17 A I S S+ 0 0 129 -3,-0.3 -3,-0.0 -2,-0.3 0, 0.0 -0.467 76.9 56.4 -94.6 60.3 20.6 -9.0 4.5 18 18 A D S S+ 0 0 139 -2,-1.1 -1,-0.2 1,-0.1 0, 0.0 -0.019 76.3 91.2 175.8 60.2 20.2 -10.5 8.0 19 19 A A - 0 0 52 -3,-0.3 2,-2.6 4,-0.0 -1,-0.1 -0.530 47.1-164.2-167.2 90.1 16.7 -11.9 8.6 20 20 A P + 0 0 138 0, 0.0 2,-0.4 0, 0.0 -3,-0.0 -0.271 63.0 103.6 -75.1 53.8 16.0 -15.6 7.9 21 21 A I S S- 0 0 132 -2,-2.6 3,-0.1 3,-0.0 0, 0.0 -0.951 82.6-105.7-142.1 117.3 12.3 -14.8 8.0 22 22 A S - 0 0 119 -2,-0.4 0, 0.0 1,-0.1 0, 0.0 -0.044 57.2 -83.3 -39.7 133.9 10.1 -14.6 4.9 23 23 A H - 0 0 143 1,-0.1 -1,-0.1 -4,-0.0 2,-0.1 -0.078 52.6-115.9 -43.2 138.3 9.2 -10.9 4.3 24 24 A Q S S+ 0 0 170 -3,-0.1 -1,-0.1 3,-0.0 -3,-0.0 -0.342 76.9 30.0 -78.0 161.7 6.3 -9.8 6.5 25 25 A T S S- 0 0 72 -2,-0.1 4,-0.0 4,-0.1 5,-0.0 0.520 98.4 -72.5 63.7 142.8 2.9 -8.8 5.1 26 26 A S - 0 0 69 1,-0.1 4,-0.1 2,-0.1 25,-0.0 0.060 59.9 -84.6 -56.2 174.1 1.6 -10.1 1.8 27 27 A D S S+ 0 0 156 2,-0.1 2,-0.9 24,-0.1 -1,-0.1 0.716 104.3 108.2 -55.5 -19.9 3.1 -9.0 -1.5 28 28 A I S S- 0 0 10 1,-0.1 -2,-0.1 4,-0.0 23,-0.1 -0.485 75.5-134.9 -64.9 101.3 0.7 -6.1 -1.1 29 29 A D > - 0 0 88 -2,-0.9 4,-1.8 1,-0.1 5,-0.1 -0.329 1.0-138.6 -60.3 137.5 3.2 -3.3 -0.3 30 30 A Q H > S+ 0 0 114 1,-0.2 4,-1.3 2,-0.2 -1,-0.1 0.880 104.7 56.6 -64.7 -39.7 2.0 -1.2 2.6 31 31 A S H > S+ 0 0 59 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.845 105.0 54.0 -60.0 -35.2 3.2 1.9 0.7 32 32 A S H > S+ 0 0 18 2,-0.2 4,-1.4 1,-0.2 5,-0.3 0.965 100.5 56.3 -63.3 -55.2 0.9 0.9 -2.1 33 33 A V H X S+ 0 0 0 -4,-1.8 4,-0.7 1,-0.3 -1,-0.2 0.817 111.6 47.0 -45.9 -33.8 -2.2 0.6 0.0 34 34 A D H X S+ 0 0 28 -4,-1.3 4,-2.0 2,-0.2 3,-0.4 0.873 98.9 66.3 -76.1 -39.9 -1.4 4.2 0.9 35 35 A T H X S+ 0 0 61 -4,-1.9 4,-0.8 1,-0.3 -2,-0.2 0.771 109.8 39.8 -51.5 -27.3 -0.9 5.2 -2.7 36 36 A L H X>S+ 0 0 0 -4,-1.4 4,-2.2 -3,-0.2 5,-0.7 0.679 103.6 69.1 -93.8 -23.6 -4.6 4.4 -3.0 37 37 A L H <5S+ 0 0 65 -4,-0.7 4,-0.4 -3,-0.4 -2,-0.2 0.885 105.2 42.1 -60.9 -40.2 -5.4 6.0 0.3 38 38 A S H <5S+ 0 0 84 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.917 107.1 61.3 -72.2 -45.8 -4.6 9.4 -1.2 39 39 A F H <5S- 0 0 121 -4,-0.8 -2,-0.2 -5,-0.3 -1,-0.2 0.906 127.8 -87.4 -45.4 -52.9 -6.3 8.7 -4.5 40 40 A G T <5S+ 0 0 51 -4,-2.2 2,-0.3 1,-0.2 -3,-0.2 0.477 83.4 113.7 137.8 61.4 -9.6 8.3 -2.7 41 41 A F < - 0 0 50 -5,-0.7 2,-0.3 -4,-0.4 -1,-0.2 -0.980 66.3 -93.7-150.2 157.9 -10.3 4.8 -1.4 42 42 A A > - 0 0 57 -2,-0.3 4,-3.4 1,-0.1 3,-0.4 -0.561 33.1-125.0 -75.8 133.9 -10.6 2.8 1.8 43 43 A E H > S+ 0 0 80 -2,-0.3 4,-1.4 1,-0.3 -1,-0.1 0.812 114.2 56.9 -45.1 -34.6 -7.4 1.2 3.0 44 44 A D H >> S+ 0 0 86 2,-0.2 4,-2.0 1,-0.2 3,-0.7 0.962 111.1 39.0 -62.6 -54.2 -9.4 -2.0 3.0 45 45 A V H 3> S+ 0 0 26 -3,-0.4 4,-3.7 1,-0.3 5,-0.3 0.836 108.8 64.4 -64.5 -33.5 -10.3 -1.7 -0.7 46 46 A A H 3X S+ 0 0 0 -4,-3.4 4,-1.3 1,-0.2 -1,-0.3 0.841 109.7 38.9 -57.8 -34.4 -6.8 -0.4 -1.3 47 47 A R H S+ 0 0 0 -4,-1.3 5,-0.8 -5,-0.3 4,-0.5 0.586 109.2 60.5 -76.1 -10.7 -3.9 -4.5 -4.6 51 51 A K H <5S+ 0 0 145 -4,-0.6 -2,-0.2 -6,-0.2 -1,-0.2 0.881 115.9 28.6 -81.7 -42.9 -4.8 -8.0 -3.6 52 52 A A H <5S+ 0 0 62 -4,-1.9 -2,-0.2 1,-0.1 -3,-0.2 0.845 131.3 39.9 -84.4 -38.9 -6.3 -8.9 -7.0 53 53 A S T <5S- 0 0 22 -4,-3.0 3,-0.2 -5,-0.2 -3,-0.2 0.958 102.0-134.4 -73.7 -54.5 -4.1 -6.6 -8.9 54 54 A G T 5 - 0 0 41 -4,-0.5 2,-2.4 -5,-0.3 -3,-0.2 0.892 66.2 -39.6 94.5 73.4 -0.9 -7.2 -7.0 55 55 A G S - 0 0 86 -2,-2.4 4,-1.8 -3,-0.2 -1,-0.2 -0.124 43.1-168.6 -40.4 111.3 -0.2 -2.6 -9.6 57 57 A I H > S+ 0 0 37 2,-0.2 4,-4.4 1,-0.2 5,-0.4 0.964 83.7 57.0 -71.2 -55.0 -2.0 0.6 -8.7 58 58 A E H > S+ 0 0 175 1,-0.3 4,-0.7 2,-0.2 -1,-0.2 0.819 114.4 42.3 -44.5 -35.9 -3.3 1.3 -12.2 59 59 A K H > S+ 0 0 125 2,-0.2 4,-3.6 3,-0.1 -1,-0.3 0.862 114.7 49.6 -79.5 -39.2 -4.9 -2.2 -11.8 60 60 A A H X S+ 0 0 0 -4,-1.8 4,-2.5 2,-0.2 -2,-0.2 0.923 107.0 54.7 -64.5 -46.0 -5.9 -1.6 -8.3 61 61 A T H X S+ 0 0 23 -4,-4.4 4,-0.7 1,-0.2 -1,-0.2 0.809 115.6 40.8 -56.9 -31.1 -7.5 1.7 -9.2 62 62 A D H >X S+ 0 0 71 -4,-0.7 4,-4.1 -5,-0.4 3,-0.8 0.906 105.9 61.4 -82.4 -47.7 -9.5 -0.2 -11.7 63 63 A W H 3X S+ 0 0 45 -4,-3.6 4,-3.4 1,-0.3 -2,-0.2 0.894 100.0 58.6 -43.8 -47.7 -10.2 -3.2 -9.5 64 64 A V H 3< S+ 0 0 19 -4,-2.5 -1,-0.3 1,-0.2 -2,-0.2 0.913 117.6 31.3 -48.4 -49.7 -12.0 -0.7 -7.3 65 65 A F H << S+ 0 0 130 -3,-0.8 -2,-0.2 -4,-0.7 -1,-0.2 0.954 114.6 58.7 -74.2 -53.8 -14.3 0.2 -10.1 66 66 A N H < S+ 0 0 110 -4,-4.1 2,-0.3 1,-0.2 -2,-0.2 0.893 128.7 0.4 -40.4 -53.3 -14.3 -3.2 -11.9 67 67 A N S < S+ 0 0 65 -4,-3.4 2,-0.3 -5,-0.3 -1,-0.2 -0.991 81.2 125.2-142.2 147.1 -15.7 -4.7 -8.7 68 68 A S - 0 0 65 -2,-0.3 -4,-0.0 -3,-0.1 -3,-0.0 -0.870 35.0-133.0 171.1 158.3 -16.6 -3.3 -5.3 69 69 A G - 0 0 54 -2,-0.3 2,-0.2 2,-0.1 -2,-0.0 -0.899 30.5 -97.2-129.5 158.1 -19.4 -3.1 -2.8 70 70 A P S S- 0 0 131 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.488 85.4 -14.7 -75.0 141.6 -21.0 -0.3 -0.7 71 71 A S S S- 0 0 124 -2,-0.2 2,-0.2 1,-0.2 -2,-0.1 0.220 71.3-118.4 52.4 175.0 -19.8 0.1 2.9 72 72 A S 0 0 83 -28,-0.0 -1,-0.2 0, 0.0 -28,-0.0 -0.635 360.0 360.0-153.2 86.8 -17.8 -2.7 4.6 73 73 A G 0 0 127 -2,-0.2 -2,-0.0 0, 0.0 0, 0.0 0.263 360.0 360.0-100.6 360.0 -19.4 -4.2 7.7