==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 28-MAY-04 1WJ2 . COMPND 2 MOLECULE: PROBABLE WRKY TRANSCRIPTION FACTOR 4; . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR K.YAMASAKI,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL . 71 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6198.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 60.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 29.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 18 25.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 399 A V 0 0 184 0, 0.0 2,-0.1 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 118.2 -25.6 -6.5 22.2 2 400 A Q + 0 0 181 1,-0.1 3,-0.1 3,-0.0 0, 0.0 -0.574 360.0 115.2-147.9 78.5 -22.4 -4.7 21.1 3 401 A T + 0 0 134 -2,-0.1 -1,-0.1 1,-0.1 0, 0.0 -0.018 65.2 68.9-134.8 29.0 -22.5 -3.1 17.7 4 402 A T + 0 0 141 -3,-0.1 2,-0.5 2,-0.0 -1,-0.1 -0.135 64.8 119.6-140.4 39.4 -22.1 0.6 18.5 5 403 A S - 0 0 94 -3,-0.1 2,-0.5 0, 0.0 -3,-0.0 -0.938 51.1-145.9-113.6 121.2 -18.5 0.8 19.7 6 404 A E - 0 0 177 -2,-0.5 2,-0.1 1,-0.0 -2,-0.0 -0.729 16.9-155.6 -87.8 125.9 -16.1 3.1 17.9 7 405 A V - 0 0 119 -2,-0.5 2,-0.5 1,-0.0 -1,-0.0 -0.271 15.5-112.3 -90.3 179.7 -12.5 1.9 17.8 8 406 A D - 0 0 148 -2,-0.1 2,-0.4 3,-0.0 -1,-0.0 -0.970 20.6-131.6-121.3 125.2 -9.3 3.8 17.4 9 407 A L - 0 0 89 -2,-0.5 2,-1.4 1,-0.1 7,-0.0 -0.605 27.3-117.8 -76.4 123.2 -7.1 3.6 14.3 10 408 A L - 0 0 150 -2,-0.4 -1,-0.1 2,-0.1 -2,-0.0 -0.425 35.6-145.9 -63.1 92.1 -3.4 3.0 15.2 11 409 A D + 0 0 107 -2,-1.4 4,-0.1 1,-0.1 -1,-0.0 -0.260 26.5 174.6 -60.7 146.4 -2.0 6.2 13.7 12 410 A D S S- 0 0 107 2,-0.6 2,-0.2 4,-0.0 -1,-0.1 -0.020 70.3 -58.3-144.7 31.1 1.5 6.0 12.2 13 411 A G S S+ 0 0 36 1,-0.1 2,-0.3 3,-0.0 -2,-0.1 -0.547 117.9 57.1 127.8 -68.9 2.1 9.4 10.7 14 412 A Y S S- 0 0 43 -2,-0.2 2,-1.1 55,-0.1 -2,-0.6 -0.748 85.5-111.9-100.9 147.3 -0.6 10.0 8.1 15 413 A R - 0 0 161 -2,-0.3 22,-1.5 -4,-0.1 2,-0.3 -0.645 43.3-176.8 -79.8 98.7 -4.4 9.9 8.8 16 414 A W B -A 36 0A 15 -2,-1.1 2,-0.4 20,-0.3 20,-0.2 -0.727 9.7-157.2 -98.8 147.5 -5.6 6.8 6.9 17 415 A R - 0 0 166 18,-1.6 2,-0.5 -2,-0.3 18,-0.5 -0.970 15.3-127.0-126.8 140.0 -9.2 5.7 6.7 18 416 A K + 0 0 79 -2,-0.4 16,-0.2 16,-0.2 3,-0.1 -0.729 34.1 160.2 -88.0 126.1 -10.7 2.3 6.0 19 417 A Y - 0 0 121 14,-1.0 2,-0.3 -2,-0.5 -1,-0.2 0.693 66.3 -14.3-112.2 -34.6 -13.2 2.2 3.2 20 418 A G E -B 33 0A 24 13,-0.7 13,-0.9 2,-0.0 -1,-0.4 -0.944 54.0-153.0-170.5 148.4 -13.2 -1.5 2.3 21 419 A Q E -B 32 0A 123 -2,-0.3 2,-0.4 11,-0.2 11,-0.2 -0.826 10.1-143.1-124.5 163.9 -11.3 -4.8 2.8 22 420 A K E -B 31 0A 127 9,-2.9 9,-3.6 -2,-0.3 2,-0.3 -0.970 7.6-151.3-130.3 144.7 -10.9 -8.0 0.8 23 421 A V - 0 0 94 -2,-0.4 2,-0.4 7,-0.2 6,-0.0 -0.847 6.1-163.9-115.1 151.2 -10.6 -11.6 1.9 24 422 A V > - 0 0 48 3,-0.3 3,-0.7 -2,-0.3 -2,-0.0 -0.994 18.7-153.0-138.3 130.5 -8.8 -14.6 0.3 25 423 A K T 3 S+ 0 0 172 -2,-0.4 -1,-0.1 1,-0.2 0, 0.0 0.840 101.7 54.7 -67.3 -33.9 -9.2 -18.3 0.9 26 424 A G T 3 S+ 0 0 64 2,-0.0 -1,-0.2 1,-0.0 -2,-0.0 0.633 105.3 63.9 -74.9 -13.3 -5.6 -18.9 -0.3 27 425 A N < - 0 0 31 -3,-0.7 -3,-0.3 1,-0.1 23,-0.1 -0.934 66.9-154.2-116.0 135.1 -4.3 -16.3 2.2 28 426 A P S S+ 0 0 97 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.775 83.1 62.6 -74.5 -27.1 -4.6 -16.7 6.1 29 427 A Y S S- 0 0 134 20,-0.2 20,-0.2 1,-0.1 -5,-0.2 -0.812 85.4-123.6-103.3 141.5 -4.5 -12.9 6.6 30 428 A P - 0 0 66 0, 0.0 2,-0.7 0, 0.0 -7,-0.2 -0.258 23.4-111.3 -76.8 166.7 -7.2 -10.5 5.2 31 429 A R E -B 22 0A 45 -9,-3.6 -9,-2.9 17,-0.1 2,-0.5 -0.891 29.9-166.9-105.7 113.0 -6.5 -7.6 2.9 32 430 A S E -BC 21 47A 11 15,-1.2 15,-1.9 -2,-0.7 2,-0.4 -0.865 2.3-164.0-102.5 126.8 -7.1 -4.1 4.5 33 431 A Y E +BC 20 46A 31 -13,-0.9 -14,-1.0 -2,-0.5 -13,-0.7 -0.913 13.3 169.5-112.6 135.1 -7.3 -1.1 2.3 34 432 A Y E - C 0 45A 37 11,-2.0 11,-1.3 -2,-0.4 2,-0.3 -0.651 16.7-152.8-129.2-174.5 -6.9 2.5 3.6 35 433 A K E - C 0 44A 62 -18,-0.5 -18,-1.6 9,-0.3 2,-1.0 -0.849 29.2-110.7-168.1 128.2 -6.5 6.0 2.2 36 434 A C E -AC 16 43A 0 7,-0.8 7,-1.2 -2,-0.3 2,-1.2 -0.457 33.5-172.0 -64.2 98.9 -5.0 9.3 3.5 37 435 A T E + C 0 42A 54 -22,-1.5 5,-0.2 -2,-1.0 -1,-0.1 -0.552 26.7 148.4 -95.0 69.2 -8.1 11.4 4.0 38 436 A T - 0 0 26 -2,-1.2 2,-1.0 3,-1.2 3,-0.4 -0.592 64.8 -68.8-100.0 163.5 -6.4 14.7 4.9 39 437 A P S S- 0 0 122 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.276 123.2 -15.5 -52.8 91.3 -7.7 18.3 4.1 40 438 A G S S+ 0 0 73 -2,-1.0 2,-0.5 1,-0.3 27,-0.0 0.021 114.1 112.8 99.5 -27.5 -7.3 18.2 0.3 41 439 A C + 0 0 5 -3,-0.4 -3,-1.2 1,-0.1 -1,-0.3 -0.684 37.6 175.9 -83.8 125.7 -5.1 15.1 0.4 42 440 A G E +C 37 0A 60 -2,-0.5 2,-0.3 22,-0.2 -5,-0.2 -0.475 15.5 157.1-128.7 63.3 -6.7 12.0 -1.2 43 441 A V E -C 36 0A 2 -7,-1.2 -7,-0.8 -2,-0.1 2,-0.5 -0.642 24.9-155.3 -89.7 145.4 -4.1 9.3 -1.2 44 442 A R E -CD 35 62A 131 18,-2.4 18,-2.9 -9,-0.3 2,-0.3 -0.978 11.5-176.7-125.4 123.2 -5.1 5.6 -1.3 45 443 A K E -CD 34 61A 23 -11,-1.3 -11,-2.0 -2,-0.5 2,-0.5 -0.881 14.6-145.4-118.7 150.4 -2.9 2.8 -0.0 46 444 A H E -CD 33 60A 48 14,-1.5 14,-1.2 -2,-0.3 2,-0.9 -0.962 3.6-157.4-119.2 124.6 -3.3 -1.0 -0.1 47 445 A V E +CD 32 59A 11 -15,-1.9 -15,-1.2 -2,-0.5 2,-0.3 -0.821 27.4 160.6-103.3 97.3 -2.1 -3.3 2.7 48 446 A E E - D 0 58A 45 10,-1.7 10,-1.0 -2,-0.9 2,-0.5 -0.894 28.5-145.9-118.3 147.9 -1.6 -6.8 1.4 49 447 A R E - D 0 57A 96 -2,-0.3 2,-0.7 8,-0.2 8,-0.2 -0.952 16.5-132.2-117.0 121.5 0.4 -9.7 2.8 50 448 A A E > + D 0 56A 25 6,-3.9 6,-1.3 -2,-0.5 5,-0.6 -0.588 26.0 176.7 -73.7 111.5 2.1 -12.2 0.5 51 449 A A T 5S+ 0 0 39 -2,-0.7 4,-0.3 1,-0.2 -1,-0.2 0.936 78.6 52.6 -79.7 -51.5 1.3 -15.6 1.7 52 450 A T T 5S+ 0 0 149 2,-0.1 -1,-0.2 4,-0.1 -2,-0.1 0.812 106.9 68.2 -54.2 -31.3 3.0 -17.7 -1.0 53 451 A D T 5S- 0 0 96 3,-0.1 2,-3.3 1,-0.1 3,-0.4 -0.524 109.5 -90.9 -89.4 158.2 6.1 -15.6 -0.2 54 452 A P T 5S- 0 0 121 0, 0.0 -3,-0.1 0, 0.0 -2,-0.1 -0.302 96.2 -49.3 -67.0 65.3 8.2 -15.8 3.0 55 453 A K S