==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 29-MAY-04 1WJU . COMPND 2 MOLECULE: NEDD8 ULTIMATE BUSTER-1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.YONEYAMA,S.KOSHIBA,N.TOCHIO,M.INOUE,T.KIGAWA,S.YOKOYAMA, . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8344.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 58.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 5.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 16.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 14.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 11.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 127 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 93.7 -1.0 -23.3 -12.2 2 2 A S - 0 0 134 1,-0.1 2,-0.3 0, 0.0 0, 0.0 0.539 360.0-151.3 62.9 141.3 2.4 -24.3 -10.9 3 3 A S + 0 0 132 1,-0.0 -1,-0.1 0, 0.0 2,-0.0 -0.996 43.6 87.5-147.7 144.1 4.3 -22.1 -8.5 4 4 A G + 0 0 70 -2,-0.3 2,-0.3 1,-0.0 3,-0.1 0.228 34.8 157.3 129.0 108.0 7.9 -21.5 -7.7 5 5 A S + 0 0 118 1,-0.2 -1,-0.0 -2,-0.0 0, 0.0 -0.990 44.7 12.9-153.8 149.6 10.3 -19.0 -9.3 6 6 A S - 0 0 134 -2,-0.3 2,-0.3 1,-0.0 -1,-0.2 0.238 61.5-152.8 66.7 162.9 13.5 -17.2 -8.4 7 7 A G - 0 0 65 -3,-0.1 2,-0.3 0, 0.0 -1,-0.0 -0.940 12.4-169.8-158.8 176.1 15.8 -18.1 -5.5 8 8 A D + 0 0 119 -2,-0.3 3,-0.1 1,-0.1 0, 0.0 -0.970 17.3 169.8-167.7 164.5 18.3 -16.8 -3.0 9 9 A N S S+ 0 0 154 -2,-0.3 2,-0.3 0, 0.0 -1,-0.1 0.375 78.9 11.2-147.7 -51.4 20.8 -17.9 -0.3 10 10 A Y S S+ 0 0 206 2,-0.1 2,-0.2 0, 0.0 0, 0.0 -0.892 81.9 107.1-146.3 110.8 22.9 -15.0 0.7 11 11 A R S S- 0 0 194 -2,-0.3 0, 0.0 -3,-0.1 0, 0.0 -0.797 70.2 -81.0 179.0 137.3 22.2 -11.4 -0.2 12 12 A T - 0 0 143 -2,-0.2 2,-0.6 1,-0.1 -2,-0.1 -0.089 48.0-123.1 -44.5 138.1 21.0 -8.2 1.4 13 13 A T - 0 0 106 1,-0.1 2,-1.7 2,-0.0 -1,-0.1 -0.810 8.5-149.4 -93.8 119.7 17.2 -8.1 1.7 14 14 A G + 0 0 49 -2,-0.6 24,-0.6 2,-0.0 25,-0.3 -0.277 48.1 145.0 -81.6 50.8 15.6 -5.1 -0.0 15 15 A I E -A 37 0A 68 -2,-1.7 2,-0.3 22,-0.2 22,-0.2 -0.490 29.9-167.6 -88.0 160.1 12.8 -5.2 2.5 16 16 A A E -A 36 0A 2 20,-1.6 20,-2.2 -2,-0.2 2,-0.3 -0.946 19.8-127.0-153.0 127.4 11.0 -2.1 3.8 17 17 A T E -A 35 0A 24 -2,-0.3 67,-1.9 18,-0.2 66,-0.6 -0.586 26.4-164.6 -77.4 131.9 8.6 -1.7 6.7 18 18 A I E -Ab 34 84A 0 16,-2.3 16,-3.6 -2,-0.3 2,-0.7 -0.951 14.9-136.9-121.0 139.0 5.4 0.1 5.8 19 19 A E E -Ab 33 85A 58 65,-1.7 67,-3.1 -2,-0.4 2,-0.5 -0.849 19.2-164.1 -98.6 110.7 2.9 1.5 8.3 20 20 A V E -Ab 32 86A 1 12,-3.1 12,-1.2 -2,-0.7 2,-0.7 -0.836 3.3-161.0 -97.7 126.4 -0.7 0.7 7.3 21 21 A F E - b 0 87A 55 65,-1.4 67,-1.6 -2,-0.5 10,-0.1 -0.851 10.4-159.8-111.0 95.8 -3.4 2.8 9.0 22 22 A L - 0 0 36 -2,-0.7 67,-0.1 65,-0.1 10,-0.0 -0.328 25.3-101.9 -71.0 155.2 -6.7 1.0 8.7 23 23 A P >> - 0 0 34 0, 0.0 2,-2.7 0, 0.0 3,-0.9 -0.274 38.8 -93.8 -75.0 163.8 -10.0 3.0 9.1 24 24 A P T 34 S+ 0 0 134 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.298 113.5 71.1 -75.0 56.3 -12.1 3.0 12.3 25 25 A R T 34 S+ 0 0 188 -2,-2.7 -3,-0.0 0, 0.0 0, 0.0 0.541 101.9 28.8-134.2 -47.1 -14.2 0.2 11.0 26 26 A L T <4 S+ 0 0 75 -3,-0.9 -4,-0.0 0, 0.0 0, 0.0 0.946 75.8 179.6 -83.8 -60.0 -12.1 -3.0 11.0 27 27 A K < + 0 0 189 -4,-0.9 3,-0.1 2,-0.1 0, 0.0 0.912 10.5 163.5 53.1 100.9 -9.8 -2.3 13.9 28 28 A K - 0 0 141 1,-0.5 2,-0.3 2,-0.1 -1,-0.0 0.753 57.3 -46.2-110.8 -50.0 -7.5 -5.3 14.2 29 29 A D S S- 0 0 128 1,-0.3 -1,-0.5 0, 0.0 3,-0.2 -0.925 76.9 -45.2-167.6-173.9 -4.7 -4.1 16.4 30 30 A R S S- 0 0 199 -2,-0.3 -1,-0.3 1,-0.2 -2,-0.1 0.223 100.2 -28.4 -54.3-173.5 -2.2 -1.3 16.9 31 31 A K S S- 0 0 110 1,-0.1 2,-0.4 -10,-0.1 -1,-0.2 -0.177 73.0-137.1 -44.7 119.1 -0.3 0.3 14.0 32 32 A N E -A 20 0A 34 -12,-1.2 -12,-3.1 -3,-0.2 2,-0.4 -0.724 14.3-152.6 -87.8 130.1 0.0 -2.5 11.5 33 33 A L E -A 19 0A 80 -2,-0.4 2,-0.5 -14,-0.2 -14,-0.2 -0.866 4.6-160.5-105.9 136.3 3.4 -2.9 9.8 34 34 A L E -A 18 0A 7 -16,-3.6 -16,-2.3 -2,-0.4 2,-0.7 -0.971 5.6-152.8-120.3 120.5 3.8 -4.3 6.4 35 35 A E E +A 17 0A 125 -2,-0.5 2,-0.3 -18,-0.2 -18,-0.2 -0.831 35.0 140.5 -95.9 116.4 7.2 -5.7 5.2 36 36 A T E -A 16 0A 11 -20,-2.2 -20,-1.6 -2,-0.7 -2,-0.0 -0.949 46.9-100.6-148.8 165.4 7.7 -5.5 1.5 37 37 A R E -A 15 0A 113 -2,-0.3 -22,-0.2 -22,-0.2 -21,-0.1 -0.080 19.6-132.8 -78.0-177.2 10.3 -4.8 -1.1 38 38 A L S S+ 0 0 36 -24,-0.6 38,-1.3 37,-0.1 37,-0.4 0.586 99.1 68.9-110.9 -22.0 10.7 -1.5 -3.1 39 39 A H S S+ 0 0 131 -25,-0.3 3,-0.1 36,-0.1 38,-0.1 0.810 79.3 100.5 -66.8 -30.6 11.1 -3.1 -6.5 40 40 A I S S- 0 0 19 1,-0.1 35,-1.8 34,-0.1 36,-0.2 -0.247 85.5-106.8 -57.0 142.7 7.5 -4.2 -6.3 41 41 A T B >> -E 74 0B 61 33,-0.2 3,-2.2 1,-0.1 4,-1.1 -0.490 23.9-114.6 -75.1 142.1 5.1 -2.0 -8.3 42 42 A G H 3> S+ 0 0 0 31,-1.2 4,-1.8 28,-0.5 29,-0.3 0.778 119.4 62.1 -43.7 -31.0 2.9 0.4 -6.3 43 43 A R H 3> S+ 0 0 165 28,-1.1 4,-1.5 1,-0.2 -1,-0.3 0.884 95.4 57.9 -64.2 -40.4 0.1 -1.7 -7.7 44 44 A E H <> S+ 0 0 108 -3,-2.2 4,-3.1 2,-0.2 -1,-0.2 0.851 105.3 52.7 -57.9 -36.4 1.5 -4.8 -5.9 45 45 A L H X S+ 0 0 2 -4,-1.1 4,-1.8 2,-0.3 5,-0.5 0.992 103.9 51.8 -62.5 -64.2 1.1 -2.8 -2.7 46 46 A R H X S+ 0 0 44 -4,-1.8 4,-0.8 1,-0.3 -1,-0.2 0.781 119.3 41.1 -42.8 -30.9 -2.5 -1.9 -3.2 47 47 A S H X S+ 0 0 36 -4,-1.5 4,-2.8 -5,-0.2 -1,-0.3 0.841 112.3 54.8 -86.2 -39.1 -3.0 -5.6 -3.8 48 48 A K H X S+ 0 0 76 -4,-3.1 4,-4.8 2,-0.2 6,-0.3 0.990 107.4 46.9 -56.4 -69.3 -0.7 -6.7 -1.0 49 49 A I H X S+ 0 0 0 -4,-1.8 4,-3.5 2,-0.2 6,-0.6 0.878 113.9 52.2 -38.3 -52.2 -2.3 -4.8 1.8 50 50 A A H <>S+ 0 0 2 -4,-0.8 5,-2.4 -5,-0.5 -1,-0.2 0.969 116.5 35.7 -49.0 -70.5 -5.6 -6.1 0.5 51 51 A E H ><5S+ 0 0 154 -4,-2.8 3,-1.2 3,-0.3 -1,-0.2 0.885 116.0 59.3 -51.2 -43.6 -4.6 -9.8 0.5 52 52 A T H 3<5S+ 0 0 56 -4,-4.8 -2,-0.2 1,-0.3 -1,-0.2 0.958 120.7 24.0 -49.6 -63.4 -2.5 -9.1 3.6 53 53 A F T 3<5S- 0 0 52 -4,-3.5 -1,-0.3 -5,-0.2 -2,-0.2 0.126 111.6-115.7 -90.6 19.5 -5.5 -8.0 5.6 54 54 A G T < 5S+ 0 0 65 -3,-1.2 -3,-0.3 -6,-0.3 -4,-0.2 0.691 74.7 138.9 53.8 18.6 -7.8 -10.0 3.3 55 55 A L < - 0 0 50 -5,-2.4 2,-0.3 -6,-0.6 -1,-0.1 -0.051 60.3 -80.2 -79.9-173.0 -9.2 -6.6 2.5 56 56 A Q - 0 0 105 3,-0.2 -1,-0.1 1,-0.1 -3,-0.1 -0.725 29.9-173.4 -95.5 143.2 -10.2 -5.4 -1.0 57 57 A E S > S+ 0 0 53 -2,-0.3 3,-0.7 2,-0.1 -1,-0.1 0.691 89.3 51.1-102.9 -28.7 -7.6 -4.1 -3.5 58 58 A N T 3 S+ 0 0 103 1,-0.2 -1,-0.1 -11,-0.1 -11,-0.1 0.275 114.3 47.9 -91.1 9.1 -10.1 -2.9 -6.1 59 59 A Y T 3 S+ 0 0 133 30,-0.1 32,-0.3 32,-0.0 2,-0.3 -0.063 105.3 63.4-138.3 32.1 -11.9 -1.0 -3.4 60 60 A I < - 0 0 4 -3,-0.7 2,-0.3 30,-0.2 30,-0.2 -0.971 55.1-158.6-152.5 161.1 -9.0 0.8 -1.6 61 61 A K E -C 89 0A 64 28,-1.6 28,-1.7 -2,-0.3 2,-0.1 -0.961 17.0-133.6-149.7 127.4 -6.3 3.4 -2.3 62 62 A I E -C 88 0A 1 -2,-0.3 7,-1.9 26,-0.2 2,-0.4 -0.455 19.1-157.9 -78.9 152.5 -3.1 4.0 -0.5 63 63 A V E +CD 87 68A 33 24,-1.1 24,-1.8 5,-0.2 2,-0.4 -1.000 14.5 171.4-136.6 133.4 -2.0 7.5 0.4 64 64 A I E > + D 0 67A 25 3,-1.4 3,-0.6 -2,-0.4 22,-0.1 -0.983 68.7 1.7-145.2 129.3 1.4 8.9 1.2 65 65 A N T 3 S- 0 0 130 -2,-0.4 -1,-0.2 1,-0.3 3,-0.1 0.962 126.5 -61.0 60.4 54.6 2.6 12.4 1.7 66 66 A K T 3 S+ 0 0 212 1,-0.2 -1,-0.3 -3,-0.1 2,-0.2 0.770 123.9 104.1 43.2 28.0 -0.9 13.8 1.3 67 67 A K E < S-D 64 0A 154 -3,-0.6 -3,-1.4 3,-0.0 2,-0.3 -0.694 77.7 -96.0-127.2 179.3 -0.6 12.3 -2.1 68 68 A Q E -D 63 0A 102 -5,-0.2 2,-0.3 -2,-0.2 -5,-0.2 -0.796 41.6-101.8-103.1 143.8 -1.9 9.2 -3.9 69 69 A L - 0 0 3 -7,-1.9 2,-1.5 -2,-0.3 3,-0.1 -0.456 31.2-133.9 -64.6 124.2 0.1 6.0 -4.3 70 70 A Q > + 0 0 103 -2,-0.3 3,-2.3 1,-0.2 -28,-0.5 -0.649 27.9 176.6 -84.0 87.8 1.6 5.8 -7.8 71 71 A L T 3 S+ 0 0 40 -2,-1.5 -28,-1.1 1,-0.3 -1,-0.2 0.756 82.4 61.1 -61.4 -24.4 0.7 2.3 -8.8 72 72 A G T 3 S+ 0 0 62 -30,-0.2 2,-0.4 -3,-0.1 -1,-0.3 0.538 104.9 58.3 -79.0 -7.7 2.3 3.2 -12.1 73 73 A K S < S- 0 0 90 -3,-2.3 -31,-1.2 2,-0.0 -30,-0.0 -0.956 92.2-108.6-126.0 143.7 5.5 3.8 -10.3 74 74 A T B > -E 41 0B 39 -2,-0.4 4,-2.9 -33,-0.2 5,-0.4 -0.299 36.9-104.6 -67.2 152.3 7.6 1.5 -8.1 75 75 A L H >>S+ 0 0 0 -35,-1.8 5,-3.2 -37,-0.4 4,-1.7 0.839 129.2 44.4 -43.6 -38.6 7.7 2.0 -4.4 76 76 A E H 45S+ 0 0 139 -38,-1.3 -1,-0.3 3,-0.2 -37,-0.1 0.882 110.9 53.5 -74.5 -40.8 11.2 3.4 -5.0 77 77 A E H 45S+ 0 0 132 -39,-0.3 -2,-0.2 1,-0.2 -1,-0.1 0.959 112.8 42.1 -57.6 -55.7 10.0 5.4 -8.0 78 78 A Q H <5S- 0 0 50 -4,-2.9 -1,-0.2 -8,-0.2 -2,-0.2 0.897 128.3 -97.8 -58.3 -43.2 7.3 7.2 -6.1 79 79 A G T <5 + 0 0 48 -4,-1.7 2,-0.6 -5,-0.4 -3,-0.2 0.671 62.6 159.3 121.8 55.3 9.6 7.6 -3.2 80 80 A V < + 0 0 7 -5,-3.2 -1,-0.1 -6,-0.2 2,-0.1 -0.929 11.1 169.0-110.5 115.0 8.9 4.9 -0.6 81 81 A A - 0 0 56 -2,-0.6 3,-0.3 1,-0.2 2,-0.2 -0.292 42.3 -62.7-107.6-166.5 11.7 4.2 1.8 82 82 A H S S+ 0 0 110 1,-0.2 -1,-0.2 -2,-0.1 -64,-0.1 -0.509 114.5 23.4 -82.0 150.9 12.0 2.2 5.0 83 83 A N S S+ 0 0 115 -66,-0.6 -1,-0.2 -2,-0.2 2,-0.2 0.969 90.2 154.5 58.8 57.1 9.9 3.0 8.0 84 84 A V E -b 18 0A 30 -67,-1.9 -65,-1.7 -3,-0.3 2,-0.3 -0.631 37.8-127.3-110.6 170.2 7.3 4.8 6.0 85 85 A K E -b 19 0A 130 -2,-0.2 2,-0.3 -67,-0.2 -65,-0.2 -0.898 21.8-177.7-120.4 149.4 3.6 5.5 6.7 86 86 A A E -b 20 0A 0 -67,-3.1 -65,-1.4 -2,-0.3 2,-0.3 -0.995 14.7-142.2-146.8 145.5 0.6 4.7 4.5 87 87 A M E -bC 21 63A 78 -24,-1.8 -24,-1.1 -2,-0.3 2,-0.6 -0.850 11.2-137.9-111.5 146.4 -3.1 5.4 4.8 88 88 A V E - C 0 62A 8 -67,-1.6 2,-0.3 -2,-0.3 -26,-0.2 -0.911 25.6-179.4-106.5 118.1 -6.0 3.1 3.7 89 89 A L E - C 0 61A 63 -28,-1.7 -28,-1.6 -2,-0.6 2,-0.5 -0.808 22.5-129.9-115.1 156.5 -8.9 4.8 2.0 90 90 A E - 0 0 104 -2,-0.3 -30,-0.2 -30,-0.2 -31,-0.0 -0.932 25.2-122.1-111.1 123.7 -12.1 3.4 0.6 91 91 A L - 0 0 67 -2,-0.5 2,-0.1 -32,-0.3 3,-0.1 0.009 32.5-107.7 -52.9 166.3 -13.2 4.2 -2.9 92 92 A K - 0 0 186 1,-0.2 -1,-0.1 0, 0.0 0, 0.0 -0.450 55.4 -55.3 -95.1 170.8 -16.5 5.9 -3.4 93 93 A Q - 0 0 173 -2,-0.1 2,-0.8 1,-0.1 -1,-0.2 -0.228 55.3-154.9 -48.5 118.9 -19.7 4.4 -4.9 94 94 A S + 0 0 109 1,-0.2 -1,-0.1 -3,-0.1 -3,-0.0 -0.876 30.2 154.9-106.1 103.0 -18.7 3.1 -8.3 95 95 A S + 0 0 91 -2,-0.8 -1,-0.2 1,-0.0 -2,-0.0 0.928 17.8 145.0 -88.3 -60.8 -21.7 2.9 -10.6 96 96 A G + 0 0 67 2,-0.0 2,-0.3 3,-0.0 3,-0.1 -0.201 64.1 2.6 56.7-146.0 -20.1 3.2 -14.1 97 97 A P S S- 0 0 123 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.534 89.7-101.6 -75.0 134.8 -21.9 1.2 -16.8 98 98 A S - 0 0 126 -2,-0.3 2,-0.5 1,-0.1 -2,-0.0 -0.148 36.4-117.6 -52.9 147.8 -25.0 -0.7 -15.8 99 99 A S 0 0 129 1,-0.1 -1,-0.1 -3,-0.1 -3,-0.0 -0.812 360.0 360.0 -95.8 127.3 -24.6 -4.4 -15.2 100 100 A G 0 0 127 -2,-0.5 -1,-0.1 0, 0.0 -2,-0.1 0.160 360.0 360.0-130.4 360.0 -26.5 -6.7 -17.4